Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Reverse (-)

43519521 .. 43525524

Gene Structure 6004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG360500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAATCCTATGGAATTCATCGAGTCACTCGATCCTCAGATCCTTGTGGGTGCATCTGTAGCTTTTGTTGTCATTGTAGTTGCAGCTTTTCTCTTCTCCTCCAAGAAGCCCAAAGGTTGCTTAGATCCCCAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACACAACTGAGCCACAATGTGGCAAAGTTCAGATTTGAACTTCCGACACCGACTTCAATTTTAGGTCTTCCGATTGGACAACACATAAGTTGTAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCATATACCCCAACCACATTGGATTCTGATGTTGGATACTTTGAACTAGTTATAAAGATGTATCCTCAAGGAAGAATGTCACACCATTTCCGTGAGATGCGTGTTGGAGATCATCTTGCTGTCAAGGGACCCAAGGGCCGTTTCAAGTATGAACCTGGCCAAGTTAGAGCTTTTGGGATGCTTGCTGGAGGCTCTGGAATCACTCCAATGTTCCAGGTTGCTAGGGCAATATTAGAAAATCCAAAAGACAAAACAAGGGTTCACCTGATCTATGCCAATGTGACTTACGAGGACATCCTCTTGAAGGATGAGTTGGATGGCCTTGCTAGAACTTACCCTGATTGCTTCCAAATCTACTACGTATTGAATCATCCTCATGAAGTATGGGATGGTGGTGTTGGATTTGTCTCGAAGGAAATGATTCAAACTCACTTGCCAGCCCCTGGCCCTGATATTCAGATCCTAAGATGTGGTCCACCACCCATGAACAAGGCCATGGCTGCTCATCTTGAATCACTTGAATATGCACCTCATATGCAGTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

280

Amino Acids

31.42

Weight (kDa)

7.73

Isoelectric Point (pI)

28.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	49 - 147	1.4e-34	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	157 - 263	8.4e-29	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	181, 734
AclWI	GGATC	4 cut(s)	26, 34, 119, 745
AcoI	YGGCCR	2 cut(s)	268, 448
AcsI	RAATTY	2 cut(s)	14, 133
AdeI	CACNNNGTG	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	181, 595, 734
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	445, 504, 733
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 587, 619
AluBI	AGCT	3 cut(s)	62, 86, 461
AluI	AGCT	3 cut(s)	62, 86, 461
Alw26I	GTCTC	1 cut(s)	703
AlwI	GGATC	4 cut(s)	26, 34, 119, 745
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	6 cut(s)	268, 427, 448, 610, 736, 783
ApeKI	GCWGC	2 cut(s)	83, 791
ApoI	RAATTY	2 cut(s)	14, 133
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	4 cut(s)	419, 427, 737, 764
AsuHPI	GGTGA	2 cut(s)	287, 545
AvaII	GGWCC	2 cut(s)	419, 764
BalI	TGGCCA	2 cut(s)	270, 450
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	95, 778
BccI	CCATC	3 cut(s)	260, 602, 674
BceAI	ACGGC	1 cut(s)	414
BciT130I	CCWGG	3 cut(s)	447, 506, 735
BciVI	GTATCC	2 cut(s)	320, 363
BcoDI	GTCTC	1 cut(s)	703
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	3 cut(s)	338, 513, 618
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	2 cut(s)	320, 363
BisI	GCNGC	2 cut(s)	84, 792
BlsI	GCNGC	2 cut(s)	85, 793
Bme1390I	CCNGG	3 cut(s)	447, 506, 735
Bme18I	GGWCC	2 cut(s)	419, 764
BmgT120I	GGNCC	4 cut(s)	419, 427, 737, 764
BmiI	GGNNCC	2 cut(s)	420, 421
BmrFI	CCNGG	3 cut(s)	447, 506, 735
BmsI	GCATC	3 cut(s)	62, 378, 459
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	652
BsaJI	CCNNGG	4 cut(s)	271, 423, 733, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 595, 734
Bse1I	ACTGG	1 cut(s)	835
BseBI	CCWGG	3 cut(s)	447, 506, 735
BseDI	CCNNGG	4 cut(s)	271, 423, 733, 786
BseGI	GGATG	7 cut(s)	271, 474, 585, 604, 613, 661, 685
BseLI	CCNNNNNNNGG	3 cut(s)	181, 595, 734
BseMII	CTCAG	2 cut(s)	50, 161
BseNI	ACTGG	1 cut(s)	835
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	95, 778
BshFI	GGCC	6 cut(s)	270, 429, 450, 612, 738, 785
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	181, 595, 734
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	6 cut(s)	270, 429, 450, 612, 738, 785
Bsp143I	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
Bsp19I	CCATGG	1 cut(s)	786
BspANI	GGCC	6 cut(s)	270, 429, 450, 612, 738, 785
BspCNI	CTCAG	2 cut(s)	49, 162
BspHI	TCATGA	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	420, 421
BspPI	GGATC	4 cut(s)	26, 34, 119, 745
BsrI	ACTGG	1 cut(s)	835
BssECI	CCNNGG	4 cut(s)	271, 423, 733, 786
BssMI	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
BssT1I	CCWWGG	3 cut(s)	271, 423, 786
Bst2UI	CCWGG	3 cut(s)	447, 506, 735
Bst6I	CTCTTC	2 cut(s)	98, 273
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	2 cut(s)	474, 729
BstDEI	CTNAG	4 cut(s)	36, 121, 170, 755
BstDSI	CCRYGG	1 cut(s)	786
BstENI	CCTNNNNNAGG	1 cut(s)	593
BstF5I	GGATG	7 cut(s)	271, 474, 585, 604, 613, 661, 685
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	34, 42, 127, 403, 561, 753
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 267, 791
BstNI	CCWGG	3 cut(s)	447, 506, 735
BstSCI	CCNGG	3 cut(s)	445, 504, 733
BstSFI	CTRYAG	1 cut(s)	57
BstSNI	TACGTA	1 cut(s)	652
BstV1I	GCAGC	2 cut(s)	95, 778
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	39, 124, 750
BstYI	RGATCY	3 cut(s)	39, 124, 750
BsuI	GTATCC	2 cut(s)	320, 363
BsuRI	GGCC	6 cut(s)	270, 429, 450, 612, 738, 785
BtgI	CCRYGG	1 cut(s)	786
BtsCI	GGATG	7 cut(s)	271, 474, 585, 604, 613, 661, 685
Cac8I	GCNNGC	2 cut(s)	474, 729
CaiI	CAGNNNCTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	667
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	4 cut(s)	419, 427, 737, 764
CviAII	CATG	3 cut(s)	668, 775, 787
DdeI	CTNAG	4 cut(s)	36, 121, 170, 755
DpnI	GATC	6 cut(s)	33, 41, 126, 402, 560, 752
DpnII	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	2 cut(s)	268, 448
Eam1104I	CTCTTC	2 cut(s)	98, 273
EarI	CTCTTC	2 cut(s)	98, 273
Eco105I	TACGTA	1 cut(s)	652
Eco130I	CCWWGG	3 cut(s)	271, 423, 786
Eco47I	GGWCC	2 cut(s)	419, 764
EcoNI	CCTNNNNNAGG	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	3 cut(s)	445, 504, 733
EcoT14I	CCWWGG	3 cut(s)	271, 423, 786
ErhI	CCWWGG	3 cut(s)	271, 423, 786
FaeI	CATG	3 cut(s)	671, 778, 790
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	667, 774, 786
FauNDI	CATATG	1 cut(s)	825
Fnu4HI	GCNGC	2 cut(s)	84, 792
FokI	GGATG	7 cut(s)	278, 481, 572, 611, 620, 648, 692
Fsp4HI	GCNGC	2 cut(s)	84, 792
FspBI	CTAG	3 cut(s)	338, 513, 618
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	84, 792
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	6 cut(s)	270, 429, 450, 612, 738, 785
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	671, 778, 790
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	7 cut(s)	4, 23, 314, 489, 658, 712, 803
HphI	GGTGA	2 cut(s)	287, 545
Hpy166II	GTNNAC	2 cut(s)	553, 767
Hpy188I	TCNGA	7 cut(s)	39, 194, 207, 234, 319, 750, 842
Hpy188III	TCNNGA	5 cut(s)	486, 592, 668, 700, 800
Hpy8I	GTNNAC	2 cut(s)	553, 767
HpyAV	CCTTC	2 cut(s)	589, 697
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	4 cut(s)	53, 83, 818, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 267, 791
HpyF3I	CTNAG	4 cut(s)	36, 121, 170, 755
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	3 cut(s)	671, 778, 790
HspAI	GCGC	1 cut(s)	160
KflI	GGGWCCC	1 cut(s)	419
Kzo9I	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
Lsp1109I	GCAGC	2 cut(s)	95, 778
LweI	GCATC	3 cut(s)	62, 378, 459
MaeI	CTAG	3 cut(s)	338, 513, 618
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	3 cut(s)	24, 369, 571
MalI	GATC	6 cut(s)	33, 41, 126, 402, 560, 752
MboI	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
MboII	GAAGA	4 cut(s)	85, 221, 290, 375
MflI	RGATCY	3 cut(s)	39, 124, 750
MlsI	TGGCCA	2 cut(s)	270, 450
MluCI	AATT	3 cut(s)	14, 133, 219
MluNI	TGGCCA	2 cut(s)	270, 450
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	5 cut(s)	230, 304, 376, 585, 670
MnlI	CCTC	9 cut(s)	45, 109, 274, 366, 473, 574, 599, 675, 831
Mox20I	TGGCCA	2 cut(s)	270, 450
MroXI	GAANNNNTTC	1 cut(s)	711
MscI	TGGCCA	2 cut(s)	270, 450
MslI	CAYNNNNRTG	3 cut(s)	381, 497, 666
Msp20I	TGGCCA	2 cut(s)	270, 450
MspR9I	CCNGG	3 cut(s)	447, 506, 735
MvaI	CCWGG	3 cut(s)	447, 506, 735
MwoI	GCNNNNNNNGC	3 cut(s)	59, 267, 791
NcoI	CCATGG	1 cut(s)	786
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
NlaIII	CATG	3 cut(s)	671, 778, 790
NlaIV	GGNNCC	2 cut(s)	420, 421
NmuCI	GTSAC	3 cut(s)	24, 369, 571
PagI	TCATGA	1 cut(s)	667
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	6 cut(s)	4, 314, 489, 658, 712, 803
PflMI	CCANNNNNTGG	2 cut(s)	181, 734
PkrI	GCNGC	2 cut(s)	85, 793
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	652
PpuMI	RGGWCCY	1 cut(s)	419
PsiI	TTATAA	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	445, 504, 733
PspGI	CCWGG	3 cut(s)	445, 504, 733
PspN4I	GGNNCC	2 cut(s)	420, 421
PspPI	GGNCC	4 cut(s)	419, 427, 737, 764
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	3 cut(s)	39, 124, 750
RseI	CAYNNNNRTG	3 cut(s)	381, 497, 666
SatI	GCNGC	2 cut(s)	84, 792
Sau3AI	GATC	6 cut(s)	31, 39, 124, 400, 558, 750
Sau96I	GGNCC	4 cut(s)	419, 427, 737, 764
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	447, 506, 735
SfaNI	GCATC	3 cut(s)	62, 378, 459
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	419, 764
SmiMI	CAYNNNNRTG	3 cut(s)	381, 497, 666
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SnaBI	TACGTA	1 cut(s)	652
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	3 cut(s)	14, 133, 219
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	3 cut(s)	338, 513, 618
StyD4I	CCNGG	3 cut(s)	445, 504, 733
StyI	CCWWGG	3 cut(s)	271, 423, 786
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	3 cut(s)	21, 30, 701
TasI	AATT	3 cut(s)	14, 133, 219
TfiI	GAWTC	6 cut(s)	4, 314, 489, 658, 712, 803
TseFI	GTSAC	3 cut(s)	24, 369, 571
TseI	GCWGC	2 cut(s)	83, 791
Tsp45I	GTSAC	3 cut(s)	24, 369, 571
TspDTI	ATGAA	5 cut(s)	7, 17, 456, 684, 791
TspGWI	ACGGA	1 cut(s)	371
Van91I	CCANNNNNTGG	2 cut(s)	181, 734
VpaK11BI	GGWCC	2 cut(s)	419, 764
XagI	CCTNNNNNAGG	1 cut(s)	593
XapI	RAATTY	2 cut(s)	14, 133
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	3 cut(s)	338, 513, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.