Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

934743 .. 938024

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01060.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGATTTCTTAGAGTCACTGGATCCCCAGATCCTTGTGGGTGCAGCTGTGGCTGTTGTTGTTATTGCGGCTGCTGCTTATCTCTTCTCCTCCAAGAAGCCCAAAGTTTGCTTAGATCCAGAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACGCAGCTGAGCCACAATGTGGCAAAGTTTAAATTTGAACTTCCAACACCTACTGCAGTTTTAGGCCTTCCAATTGGACAGCACATAAGTTGCAGGGGCAAGGATGGGCAAGGAGAAGAGATTATCAAACCATATACCCCAACTACGTTGGATTCTGATGTTGGATATTTTGAATTGGTTATAAAGGTATCCTCAAGGAAGAATGTCACATCATTTCCGAGAGATGCGCGTTGGAGATCGATCTTGCTGTCAAGGGACCGAAGGGGCGTTTCAAGTATCAACCTGGCCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGGTCTGGAATCACTCCAATGTTCCAGGTATGTTGCAAGGGCAATATTAGAAAACCCAAAAGACAAAACGAAGGTGCACTTGATCTATGCCAATGTGACATATGAGGACATTCTTTTAAAGGAAGAGTTGGATGGCCTTGCTACTAACTACCCTGATCGCTTCAAGATTTACTACGTCTTAAATCAGCCTCCGGAAGTATGGGATGGTGGTGTCGGCTTTGTCTCAAAGGAAATGATTCAAGAGCACTTGCCTGCCCTAGCGCATGATATTCAGATTCTGAGATGTGGTCCACCCCCGATGAACAAGGCCATGGCTGTTCACCTTGAAGCACTTAGATATGCACCGGAGATGCAGTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

279

Amino Acids

31.25

Weight (kDa)

7.65

Isoelectric Point (pI)

36.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccB7I	CCANNNNNTGG	1 cut(s)	172
AccII	CGCG	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	4 cut(s)	17, 25, 30, 110
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	124, 185
AdeI	CACNNNGTG	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	8 cut(s)	130, 139, 191, 326, 426, 634, 710, 797
AjnI	CCWGG	2 cut(s)	435, 494
AloI	GAACNNNNNNTCC	1 cut(s)	809
AluBI	AGCT	2 cut(s)	47, 160
AluI	AGCT	2 cut(s)	47, 160
Alw21I	GWGCWC	2 cut(s)	549, 717
Alw26I	GTCTC	1 cut(s)	697
Alw44I	GTGCAC	1 cut(s)	545
AlwI	GGATC	4 cut(s)	17, 25, 30, 110
AlwNI	CAGNNNCTG	1 cut(s)	748
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	4 cut(s)	217, 438, 604, 777
ApaLI	GTGCAC	1 cut(s)	545
ApeKI	GCWGC	4 cut(s)	44, 71, 74, 157
ApoI	RAATTY	2 cut(s)	124, 185
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	3 cut(s)	153, 382, 733
AspS9I	GGNCC	2 cut(s)	409, 758
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	2 cut(s)	409, 758
BaeGI	GKGCMC	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	440
BamHI	GGATCC	1 cut(s)	22
Bbv12I	GWGCWC	2 cut(s)	549, 717
BbvI	GCAGC	4 cut(s)	56, 58, 61, 169
BccI	CCATC	3 cut(s)	251, 596, 668
BciT130I	CCWGG	2 cut(s)	437, 496
BciVI	GTATCC	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	697
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	352
BisI	GCNGC	5 cut(s)	45, 69, 72, 75, 158
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	5 cut(s)	46, 70, 73, 76, 159
Bme1390I	CCNGG	2 cut(s)	437, 496
Bme18I	GGWCC	2 cut(s)	409, 758
BmgT120I	GGNCC	2 cut(s)	409, 758
BmiI	GGNNCC	2 cut(s)	24, 410
BmrFI	CCNGG	2 cut(s)	437, 496
BmsI	GCATC	3 cut(s)	367, 449, 810
BpmI	CTGGAG	1 cut(s)	488
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	780
BsaWI	WCCGGW	2 cut(s)	661, 814
BsaXI	ACNNNNNCTCC	1 cut(s)	809
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	24, 829
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	2 cut(s)	437, 496
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	780
BseGI	GGATG	4 cut(s)	262, 464, 607, 679
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	152, 740
BseNI	ACTGG	2 cut(s)	24, 829
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	4 cut(s)	56, 58, 61, 169
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	4 cut(s)	219, 440, 606, 779
BshVI	ATCGAT	1 cut(s)	392
BsiHKAI	GWGCWC	2 cut(s)	549, 717
BsiSI	CCGG	2 cut(s)	662, 815
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	697
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	4 cut(s)	219, 440, 606, 779
Bsp1286I	GDGCHC	2 cut(s)	549, 717
Bsp13I	TCCGGA	1 cut(s)	661
Bsp143I	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	4 cut(s)	219, 440, 606, 779
BspCNI	CTCAG	2 cut(s)	153, 741
BspDI	ATCGAT	1 cut(s)	392
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	24, 410
BspMAI	CTGCAG	1 cut(s)	211
BspPI	GGATC	4 cut(s)	17, 25, 30, 110
BsrI	ACTGG	2 cut(s)	24, 829
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	437, 496
Bst6I	CTCTTC	3 cut(s)	89, 264, 588
BstC8I	GCNNGC	3 cut(s)	155, 464, 723
BstDEI	CTNAG	5 cut(s)	10, 112, 161, 749, 803
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	4 cut(s)	262, 464, 607, 679
BstFNI	CGCG	1 cut(s)	382
BstHHI	GCGC	3 cut(s)	153, 382, 733
BstKTI	GATC	7 cut(s)	25, 33, 118, 392, 396, 555, 628
BstMAI	GTCTC	1 cut(s)	697
BstMBI	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 74, 157
BstNI	CCWGG	2 cut(s)	437, 496
BstSCI	CCNGG	2 cut(s)	435, 494
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	549
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	56, 58, 61, 169
BstX2I	RGATCY	3 cut(s)	22, 30, 115
BstYI	RGATCY	3 cut(s)	22, 30, 115
Bsu15I	ATCGAT	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	4 cut(s)	219, 440, 606, 779
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	780
BtsCI	GGATG	4 cut(s)	262, 464, 607, 679
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	155, 464, 723
CaiI	CAGNNNCTG	1 cut(s)	748
CfoI	GCGC	3 cut(s)	153, 382, 733
Cfr13I	GGNCC	2 cut(s)	409, 758
ClaI	ATCGAT	1 cut(s)	392
CviAII	CATG	2 cut(s)	734, 781
DdeI	CTNAG	5 cut(s)	10, 112, 161, 749, 803
DpnI	GATC	7 cut(s)	24, 32, 117, 391, 395, 554, 627
DpnII	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
DraI	TTTAAA	2 cut(s)	184, 588
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	3 cut(s)	89, 264, 588
EarI	CTCTTC	3 cut(s)	89, 264, 588
Eco130I	CCWWGG	1 cut(s)	780
Eco147I	AGGCCT	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	409, 758
EcoRII	CCWGG	2 cut(s)	435, 494
EcoT14I	CCWWGG	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	2 cut(s)	737, 784
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	733, 780
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	45, 69, 72, 75, 158
FokI	GGATG	4 cut(s)	269, 471, 614, 686
Fsp4HI	GCNGC	5 cut(s)	45, 69, 72, 75, 158
FspBI	CTAG	1 cut(s)	728
GlaI	GCGC	3 cut(s)	152, 381, 732
GluI	GCNGC	5 cut(s)	45, 69, 72, 75, 158
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	4 cut(s)	219, 440, 606, 779
HapII	CCGG	2 cut(s)	662, 815
HhaI	GCGC	3 cut(s)	153, 382, 733
Hin1II	CATG	2 cut(s)	737, 784
Hin6I	GCGC	3 cut(s)	151, 380, 731
HinP1I	GCGC	3 cut(s)	151, 380, 731
HinfI	GANTC	5 cut(s)	14, 305, 479, 706, 745
HpaII	CCGG	2 cut(s)	662, 815
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	3 cut(s)	547, 761, 790
Hpy188I	TCNGA	5 cut(s)	310, 372, 744, 750, 836
Hpy188III	TCNNGA	5 cut(s)	119, 476, 634, 662, 710
Hpy8I	GTNNAC	3 cut(s)	547, 761, 790
HpyAV	CCTTC	3 cut(s)	230, 408, 535
HpyCH4IV	ACGT	2 cut(s)	299, 645
HpyCH4V	TGCA	7 cut(s)	44, 209, 246, 506, 547, 812, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 74, 157
HpyF3I	CTNAG	5 cut(s)	10, 112, 161, 749, 803
HpySE526I	ACGT	2 cut(s)	299, 645
Hsp92II	CATG	2 cut(s)	737, 784
HspAI	GCGC	3 cut(s)	151, 380, 731
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
Lsp1109I	GCAGC	4 cut(s)	56, 58, 61, 169
LweI	GCATC	3 cut(s)	367, 449, 810
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	2 cut(s)	299, 645
MaeIII	GTNAC	3 cut(s)	15, 358, 565
MalI	GATC	7 cut(s)	24, 32, 117, 391, 395, 554, 627
MboI	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
MboII	GAAGA	4 cut(s)	76, 281, 364, 605
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	3 cut(s)	22, 30, 115
MhlI	GDGCHC	2 cut(s)	549, 717
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	4 cut(s)	124, 185, 225, 326
MluNI	TGGCCA	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	5 cut(s)	221, 282, 295, 365, 579
MnlI	CCTC	5 cut(s)	100, 355, 463, 568, 669
Mox20I	TGGCCA	1 cut(s)	440
MroI	TCCGGA	1 cut(s)	661
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	3 cut(s)	183, 587, 650
MslI	CAYNNNNRTG	1 cut(s)	487
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	2 cut(s)	47, 160
MspI	CCGG	2 cut(s)	662, 815
MspR9I	CCNGG	2 cut(s)	437, 496
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	2 cut(s)	437, 496
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	3 cut(s)	50, 74, 157
NcoI	CCATGG	1 cut(s)	780
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
NlaIII	CATG	2 cut(s)	737, 784
NlaIV	GGNNCC	2 cut(s)	24, 410
NmuCI	GTSAC	3 cut(s)	15, 358, 565
PceI	AGGCCT	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	4 cut(s)	305, 479, 706, 745
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	5 cut(s)	46, 70, 73, 76, 159
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PsiI	TTATAA	1 cut(s)	335
Psp6I	CCWGG	2 cut(s)	435, 494
PspGI	CCWGG	2 cut(s)	435, 494
PspN4I	GGNNCC	2 cut(s)	24, 410
PspPI	GGNCC	2 cut(s)	409, 758
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	748
PsuI	RGATCY	3 cut(s)	22, 30, 115
PvuII	CAGCTG	2 cut(s)	47, 160
RseI	CAYNNNNRTG	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	183, 587, 650
SatI	GCNGC	5 cut(s)	45, 69, 72, 75, 158
Sau3AI	GATC	7 cut(s)	22, 30, 115, 389, 393, 552, 625
Sau96I	GGNCC	2 cut(s)	409, 758
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	437, 496
SduI	GDGCHC	2 cut(s)	549, 717
SfaNI	GCATC	3 cut(s)	367, 449, 810
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	409, 758
SmiMI	CAYNNNNRTG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	4 cut(s)	124, 185, 225, 326
SseBI	AGGCCT	1 cut(s)	219
SsiI	CCGC	1 cut(s)	68
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	1 cut(s)	728
StuI	AGGCCT	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	435, 494
StyI	CCWWGG	1 cut(s)	780
TaiI	ACGT	2 cut(s)	302, 648
TaqI	TCGA	1 cut(s)	392
TaqII	GACCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	124, 185, 225, 326
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	4 cut(s)	305, 479, 706, 745
Tru1I	TTAA	3 cut(s)	183, 587, 650
Tru9I	TTAA	3 cut(s)	183, 587, 650
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	3 cut(s)	15, 358, 565
TseI	GCWGC	4 cut(s)	44, 71, 74, 157
Tsp45I	GTSAC	3 cut(s)	15, 358, 565
TspDTI	ATGAA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	545
VpaK11BI	GGWCC	2 cut(s)	409, 758
XapI	RAATTY	2 cut(s)	124, 185
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.