Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

2571427 .. 2576209

Gene Structure 4783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G017700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGATTTCATTGAATCACTAGATCCCCAGATCCTTCTGGGTGCAACTGTAGCTATTGTTGTCATTGTGGCTGCTGCTTATCTCTTCACCTCCAAGAAGGCCAAAGGCTCTTTAGATGCTGAGAATTTCAAGGACTTCAAACTTGTCAAGCGTACACAGCTGAGCCACAATGTGGCGAAGTTCAGATTTGAACTTCCAACACCTACTTCAGTTTTAGGTCTTCCAATTGGACAACACATAAGTTGCAGGGGGAAGGATAGCCAAGGCGAAGATGTTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTGGTTATAAAGATGTATCCTCAAGGAAGAATGTCGCATCATTTCCGAGAGATGCGTGTTGGAGATTATCTTGCTGTCAAGGGACCAAAGGGTCGTTTCAAGTATCAACCTGGCCAAGTTAGAGCATTTGGGATGCTTGCTGGAGGCTCTGGAATCACTCCAATGTTCCAGGTTGCCAGGGCAATATTAGAAAATCCAAAAGACAAAACAAAGGTGCACTTGATCTATGCCAATGTGACATATGAGGACATTCTTGTAAAGGAAGAATTGGATGGCCTTACTAGTAACTACCCTGACCGCTTCAAAATTTACTATGTCTTGAATCAGCCTCCTGAAGTATGGGATGGTGGTGTTGGCTTTGTCTCAAAGGAAATGATTCAAGCCCAGTTGCCTGCCCCGGCGCATGATATTCAGATTCTGAGATGTGGTCCACCACCCATGAACAAGGCCATGGCTGCTCATCTTGAAGCACTTGGATACGCTCCTGAGATGCAGTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

278

Amino Acids

30.88

Weight (kDa)

8.35

Isoelectric Point (pI)

29.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AasI	GACNNNNNNGTC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	172
AciI	CCGC	1 cut(s)	625
AclWI	GGATC	2 cut(s)	17, 25
AcoI	YGGCCR	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	124, 633
AcuI	CTGAAG	2 cut(s)	192, 681
AdeI	CACNNNGTG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	3 cut(s)	436, 495, 503
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AluBI	AGCT	2 cut(s)	53, 160
AluI	AGCT	2 cut(s)	53, 160
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	1 cut(s)	694
Alw44I	GTGCAC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	17, 25
AlwNI	CAGNNNCTG	1 cut(s)	745
AoxI	GGCC	4 cut(s)	99, 439, 601, 774
ApaLI	GTGCAC	1 cut(s)	542
ApeKI	GCWGC	3 cut(s)	71, 74, 782
ApoI	RAATTY	2 cut(s)	124, 633
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	730
AspS9I	GGNCC	2 cut(s)	410, 755
AsuC2I	CCSGG	1 cut(s)	725
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	2 cut(s)	410, 755
BaeGI	GKGCMC	1 cut(s)	546
BalI	TGGCCA	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	58, 61, 769
BccI	CCATC	2 cut(s)	593, 665
BciT130I	CCWGG	3 cut(s)	438, 497, 505
BciVI	GTATCC	2 cut(s)	354, 797
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	1 cut(s)	694
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	2 cut(s)	20, 609
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	2 cut(s)	354, 797
BisI	GCNGC	3 cut(s)	72, 75, 783
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	3 cut(s)	73, 76, 784
Bme1390I	CCNGG	4 cut(s)	438, 497, 505, 725
Bme18I	GGWCC	2 cut(s)	410, 755
BmgT120I	GGNCC	2 cut(s)	410, 755
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	438, 497, 505, 725
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	5 cut(s)	106, 369, 373, 450, 807
BmuI	ACTGGG	1 cut(s)	706
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	725
BsaJI	CCNNGG	4 cut(s)	262, 504, 723, 777
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	3 cut(s)	333, 712, 826
BseBI	CCWGG	3 cut(s)	438, 497, 505
BseDI	CCNNGG	4 cut(s)	262, 504, 723, 777
BseGI	GGATG	3 cut(s)	465, 604, 676
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	4 cut(s)	111, 152, 737, 804
BseNI	ACTGG	3 cut(s)	333, 712, 826
BseSI	GKGCMC	1 cut(s)	546
BseXI	GCAGC	3 cut(s)	58, 61, 769
BshFI	GGCC	4 cut(s)	101, 441, 603, 776
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	725
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	4 cut(s)	101, 441, 603, 776
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp143I	GATC	3 cut(s)	22, 30, 549
Bsp1720I	GCTNAGC	1 cut(s)	161
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	1 cut(s)	625
BspANI	GGCC	4 cut(s)	101, 441, 603, 776
BspCNI	CTCAG	4 cut(s)	112, 153, 738, 805
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	17, 25
BsrI	ACTGG	3 cut(s)	333, 712, 826
BssECI	CCNNGG	4 cut(s)	262, 504, 723, 777
BssMI	GATC	3 cut(s)	22, 30, 549
BssT1I	CCWWGG	2 cut(s)	262, 777
Bst2UI	CCWGG	3 cut(s)	438, 497, 505
Bst4CI	ACNGT	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	465, 720
BstDEI	CTNAG	4 cut(s)	120, 161, 746, 813
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	465, 604, 676
BstHHI	GCGC	1 cut(s)	730
BstKTI	GATC	3 cut(s)	25, 33, 552
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	3 cut(s)	22, 30, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 157, 782
BstNI	CCWGG	3 cut(s)	438, 497, 505
BstSCI	CCNGG	4 cut(s)	436, 495, 503, 723
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	58, 61, 769
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	22, 30
BstYI	RGATCY	2 cut(s)	22, 30
BsuI	GTATCC	2 cut(s)	354, 797
BsuRI	GGCC	4 cut(s)	101, 441, 603, 776
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	3 cut(s)	465, 604, 676
Cac8I	GCNNGC	2 cut(s)	465, 720
CaiI	CAGNNNCTG	1 cut(s)	745
CfoI	GCGC	1 cut(s)	730
Cfr13I	GGNCC	2 cut(s)	410, 755
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	3 cut(s)	731, 766, 778
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	4 cut(s)	120, 161, 746, 813
DpnI	GATC	3 cut(s)	24, 32, 551
DpnII	GATC	3 cut(s)	22, 30, 549
DraIII	CACNNNGTG	1 cut(s)	172
DrdI	GACNNNNNNGTC	1 cut(s)	417
DseDI	GACNNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	262, 777
Eco47I	GGWCC	2 cut(s)	410, 755
Eco57I	CTGAAG	2 cut(s)	192, 681
EcoRII	CCWGG	3 cut(s)	436, 495, 503
EcoT14I	CCWWGG	2 cut(s)	262, 777
ErhI	CCWWGG	2 cut(s)	262, 777
FaeI	CATG	3 cut(s)	734, 769, 781
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	730, 765, 777
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	3 cut(s)	72, 75, 783
FokI	GGATG	3 cut(s)	472, 611, 683
Fsp4HI	GCNGC	3 cut(s)	72, 75, 783
FspBI	CTAG	2 cut(s)	20, 609
GlaI	GCGC	1 cut(s)	729
GluI	GCNGC	3 cut(s)	72, 75, 783
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	101, 441, 603, 776
HapII	CCGG	1 cut(s)	725
HhaI	GCGC	1 cut(s)	730
Hin1II	CATG	3 cut(s)	734, 769, 781
Hin6I	GCGC	1 cut(s)	728
HinP1I	GCGC	1 cut(s)	728
HinfI	GANTC	6 cut(s)	14, 305, 480, 649, 703, 742
HpaII	CCGG	1 cut(s)	725
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	155, 544, 758
Hpy188I	TCNGA	6 cut(s)	185, 310, 374, 741, 747, 833
Hpy188III	TCNNGA	5 cut(s)	477, 646, 659, 791, 812
Hpy8I	GTNNAC	3 cut(s)	155, 544, 758
HpyAV	CCTTC	3 cut(s)	44, 91, 247
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	44, 246, 544, 820
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 157, 782
HpyF3I	CTNAG	4 cut(s)	120, 161, 746, 813
Hsp92II	CATG	3 cut(s)	734, 769, 781
HspAI	GCGC	1 cut(s)	728
Kzo9I	GATC	3 cut(s)	22, 30, 549
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	3 cut(s)	58, 61, 769
LweI	GCATC	5 cut(s)	106, 369, 373, 450, 807
MaeI	CTAG	2 cut(s)	20, 609
MaeIII	GTNAC	2 cut(s)	562, 611
MalI	GATC	3 cut(s)	24, 32, 551
MboI	GATC	3 cut(s)	22, 30, 549
MboII	GAAGA	5 cut(s)	76, 212, 281, 366, 602
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	2 cut(s)	22, 30
MhlI	GDGCHC	1 cut(s)	546
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	4 cut(s)	124, 225, 593, 633
MluNI	TGGCCA	1 cut(s)	441
MmeI	TCCRAC	3 cut(s)	221, 295, 367
MnlI	CCTC	5 cut(s)	100, 357, 464, 565, 666
Mox20I	TGGCCA	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	488
Msp20I	TGGCCA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	1 cut(s)	725
MspR9I	CCNGG	4 cut(s)	438, 497, 505, 725
MunI	CAATTG	1 cut(s)	225
MvaI	CCWGG	3 cut(s)	438, 497, 505
MwoI	GCNNNNNNNGC	3 cut(s)	50, 157, 782
NciI	CCSGG	1 cut(s)	725
NcoI	CCATGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	3 cut(s)	22, 30, 549
NlaIII	CATG	3 cut(s)	734, 769, 781
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	562
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	6 cut(s)	14, 305, 480, 649, 703, 742
PflMI	CCANNNNNTGG	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	73, 76, 784
PsiI	TTATAA	1 cut(s)	335
Psp6I	CCWGG	3 cut(s)	436, 495, 503
PspGI	CCWGG	3 cut(s)	436, 495, 503
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	410, 755
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	22, 30
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	488
SatI	GCNGC	3 cut(s)	72, 75, 783
Sau3AI	GATC	3 cut(s)	22, 30, 549
Sau96I	GGNCC	2 cut(s)	410, 755
ScrFI	CCNGG	4 cut(s)	438, 497, 505, 725
SduI	GDGCHC	1 cut(s)	546
SetI	ASST	8 cut(s)	55, 92, 162, 205, 220, 439, 501, 543
SfaNI	GCATC	5 cut(s)	106, 369, 373, 450, 807
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	2 cut(s)	410, 755
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	4 cut(s)	124, 225, 593, 633
SsiI	CCGC	1 cut(s)	625
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	20, 609
StyD4I	CCNGG	4 cut(s)	436, 495, 503, 723
StyI	CCWWGG	2 cut(s)	262, 777
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	4 cut(s)	124, 225, 593, 633
TfiI	GAWTC	6 cut(s)	14, 305, 480, 649, 703, 742
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	3 cut(s)	71, 74, 782
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	1 cut(s)	782
Van91I	CCANNNNNTGG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	410, 755
XapI	RAATTY	2 cut(s)	124, 633
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	2 cut(s)	20, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.