Rmu_sc0012596.1_g000002

NADH-cytochrome b5 reductase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012596.1
Physical Location & Seq
Forward (+)
1382 .. 7469
6088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012596.1_g000002.1.cds

Sequence Viewer

Length: 1125 bp
atgaatcctatggaattcatcgagtcactcgatcctcagatccttgtgggtgcatctgtagcttttgttgtcattgtagttgcagcttttctcttctcctccaagaagcccaaaggttgcttagatccccagaatttcaaggacttcaaacttgtcaagcgcacacaactgagccacaatgtggcaaagttcagatttgaacttccgacaccgacttcaattttaggtcttccgattggacaacacataagttgtaggggcaaggatggccaaggtgaagaggttatcaaaccatataccccaaccacattggattctgatgttggatactttgaactagtgataaagatgtatcctcaaggaagaatgtcacaccatttccgtgagatgcgtgttggagatcatcttgctgtcaagggacccaagccggccaactatcgccggaatctggtcaccggttgctggaatccggtcaccggttgctggaatccggtcaccggtgctgaaatccgagtcttcgacttcgacggttgcagcccaggacctgtagcagaagcagtggaggggattgcaaaggagcagcagaagaaggtccaggctggcctcggcaagcttctcggcgatgaggaccgttggcttggcgtcgagcctggccgtggagagcaccatgacgagtcgtggcatgagggagggagaggcaacgctgtaggccgtttcaagtatgaacctggccaagttagagcttttgggatgcttgctggaggctctggaatcactccaatgttccaggttgctagggcaatattagaaaatccaaaagacaaaacaagggttcacctgatctatgccaatgtgacctacgaggacatcctcttgaaggatgagttggatggccttgctagaacttaccctgatcgcttccaaatctactacgtattgaatcagcctcctgaagtatgggatggtggtgttggatttgtctcgaaggaaatgattcaaactcacttgccagcccctggccctgatattcagatcctaagatgtggtccaccacccatgaacaaggccatggctgctcatcttgaatcacttgaatatgcacctcatatgcagttccagttctga

Protein Analysis

374

Amino Acids

41.58

Weight (kDa)

6.64

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 181, 1016
AclWI GGATC 4 cut(s) 26, 34, 119, 1027
AcoI YGGCCR 4 cut(s) 268, 429, 652, 730
AcsI RAATTY 2 cut(s) 14, 133
AcuI CTGAAG 1 cut(s) 972
AcyI GRCGYC 1 cut(s) 642
AdeI CACNNNGTG 1 cut(s) 181
AfiI CCNNNNNNNGG 9 cut(s) 181, 448, 462, 476, 483, 497, 656, 877, 1016
AgeI ACCGGT 3 cut(s) 455, 476, 497
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 6 cut(s) 538, 594, 649, 727, 786, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AluBI AGCT 4 cut(s) 62, 86, 613, 743
AluI AGCT 4 cut(s) 62, 86, 613, 743
Alw21I GWGCWC 1 cut(s) 666
Alw26I GTCTC 1 cut(s) 985
AlwI GGATC 4 cut(s) 26, 34, 119, 1027
AlwNI CAGNNNCTG 2 cut(s) 545, 1016
AoxI GGCC 9 cut(s) 268, 429, 601, 652, 709, 730, 892, 1018, 1065
ApeKI GCWGC 4 cut(s) 83, 534, 580, 1073
ApoI RAATTY 2 cut(s) 14, 133
AsiGI ACCGGT 3 cut(s) 455, 476, 497
Asp700I GAANNNNTTC 1 cut(s) 993
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 6 cut(s) 419, 542, 592, 628, 1019, 1046
AsuHPI GGTGA 5 cut(s) 287, 445, 466, 487, 827
AvaII GGWCC 5 cut(s) 419, 542, 592, 628, 1046
BalI TGGCCA 2 cut(s) 270, 732
BbsI GAAGAC 2 cut(s) 221, 508
Bbv12I GWGCWC 1 cut(s) 666
BbvI GCAGC 4 cut(s) 95, 546, 592, 1060
BccI CCATC 3 cut(s) 260, 884, 956
BceAI ACGGC 2 cut(s) 639, 696
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 6 cut(s) 540, 596, 651, 729, 788, 1017
BciVI GTATCC 2 cut(s) 320, 363
BcoDI GTCTC 1 cut(s) 985
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 3 cut(s) 338, 795, 900
BfmI CTRYAG 3 cut(s) 57, 546, 705
BfuI GTATCC 2 cut(s) 320, 363
BisI GCNGC 4 cut(s) 84, 535, 581, 1074
BlsI GCNGC 4 cut(s) 85, 536, 582, 1075
Bme1390I CCNGG 6 cut(s) 540, 596, 651, 729, 788, 1017
Bme18I GGWCC 5 cut(s) 419, 542, 592, 628, 1046
BmgT120I GGNCC 6 cut(s) 419, 542, 592, 628, 1019, 1046
BmiI GGNNCC 2 cut(s) 420, 421
BmrFI CCNGG 6 cut(s) 540, 596, 651, 729, 788, 1017
BmsI GCATC 3 cut(s) 62, 378, 741
BpiI GAAGAC 2 cut(s) 221, 508
BpmI CTGGAG 1 cut(s) 780
BpuEI CTTGAG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 934
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 6 cut(s) 271, 538, 604, 655, 1015, 1068
BsaWI WCCGGW 5 cut(s) 455, 469, 476, 490, 497
Bsc4I CCNNNNNNNGG 9 cut(s) 181, 448, 462, 476, 483, 497, 656, 877, 1016
Bse118I RCCGGY 4 cut(s) 427, 455, 476, 497
Bse1I ACTGG 1 cut(s) 1117
BseBI CCWGG 6 cut(s) 540, 596, 651, 729, 788, 1017
BseDI CCNNGG 6 cut(s) 271, 538, 604, 655, 1015, 1068
BseGI GGATG 6 cut(s) 271, 756, 867, 886, 895, 967
BseLI CCNNNNNNNGG 9 cut(s) 181, 448, 462, 476, 483, 497, 656, 877, 1016
BseMII CTCAG 2 cut(s) 50, 161
BseNI ACTGG 1 cut(s) 1117
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 4 cut(s) 95, 546, 592, 1060
BshFI GGCC 9 cut(s) 270, 431, 603, 654, 711, 732, 894, 1020, 1067
BshTI ACCGGT 3 cut(s) 455, 476, 497
BsiHKAI GWGCWC 1 cut(s) 666
BsiSI CCGG 7 cut(s) 428, 442, 456, 470, 477, 491, 498
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 9 cut(s) 181, 448, 462, 476, 483, 497, 656, 877, 1016
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 9 cut(s) 270, 431, 603, 654, 711, 732, 894, 1020, 1067
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
Bsp19I CCATGG 1 cut(s) 1068
BspANI GGCC 9 cut(s) 270, 431, 603, 654, 711, 732, 894, 1020, 1067
BspCNI CTCAG 2 cut(s) 49, 162
BspLI GGNNCC 2 cut(s) 420, 421
BspPI GGATC 4 cut(s) 26, 34, 119, 1027
BsrFI RCCGGY 4 cut(s) 427, 455, 476, 497
BsrI ACTGG 1 cut(s) 1117
BssAI RCCGGY 4 cut(s) 427, 455, 476, 497
BssECI CCNNGG 6 cut(s) 271, 538, 604, 655, 1015, 1068
BssMI GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
BssNI GRCGYC 1 cut(s) 642
BssT1I CCWWGG 2 cut(s) 271, 1068
Bst2UI CCWGG 6 cut(s) 540, 596, 651, 729, 788, 1017
Bst4CI ACNGT 2 cut(s) 530, 632
Bst6I CTCTTC 2 cut(s) 98, 273
BstACI GRCGYC 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 5 cut(s) 429, 601, 611, 756, 1011
BstDEI CTNAG 4 cut(s) 36, 121, 170, 1037
BstDSI CCRYGG 2 cut(s) 655, 1068
BstEII GGTNACC 3 cut(s) 451, 472, 493
BstENI CCTNNNNNAGG 1 cut(s) 875
BstF5I GGATG 6 cut(s) 271, 756, 867, 886, 895, 967
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 7 cut(s) 34, 42, 127, 403, 843, 916, 1035
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
BstMWI GCNNNNNNNGC 3 cut(s) 59, 267, 1073
BstNI CCWGG 6 cut(s) 540, 596, 651, 729, 788, 1017
BstPI GGTNACC 3 cut(s) 451, 472, 493
BstSCI CCNGG 6 cut(s) 538, 594, 649, 727, 786, 1015
BstSFI CTRYAG 3 cut(s) 57, 546, 705
BstSNI TACGTA 1 cut(s) 934
BstV1I GCAGC 4 cut(s) 95, 546, 592, 1060
BstV2I GAAGAC 2 cut(s) 221, 508
BstX2I RGATCY 3 cut(s) 39, 124, 1032
BstYI RGATCY 3 cut(s) 39, 124, 1032
BsuI GTATCC 2 cut(s) 320, 363
BsuRI GGCC 9 cut(s) 270, 431, 603, 654, 711, 732, 894, 1020, 1067
BtgI CCRYGG 2 cut(s) 655, 1068
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 6 cut(s) 271, 756, 867, 886, 895, 967
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 5 cut(s) 429, 601, 611, 756, 1011
CaiI CAGNNNCTG 2 cut(s) 545, 1016
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 4 cut(s) 427, 455, 476, 497
Cfr13I GGNCC 6 cut(s) 419, 542, 592, 628, 1019, 1046
CseI GACGC 1 cut(s) 631
CspAI ACCGGT 3 cut(s) 455, 476, 497
CviAII CATG 4 cut(s) 668, 683, 1057, 1069
DdeI CTNAG 4 cut(s) 36, 121, 170, 1037
DpnI GATC 7 cut(s) 33, 41, 126, 402, 842, 915, 1034
DpnII GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 4 cut(s) 268, 429, 652, 730
Eam1104I CTCTTC 2 cut(s) 98, 273
EarI CTCTTC 2 cut(s) 98, 273
Eco105I TACGTA 1 cut(s) 934
Eco130I CCWWGG 2 cut(s) 271, 1068
Eco47I GGWCC 5 cut(s) 419, 542, 592, 628, 1046
Eco57I CTGAAG 1 cut(s) 972
Eco91I GGTNACC 3 cut(s) 451, 472, 493
EcoNI CCTNNNNNAGG 1 cut(s) 875
EcoO109I RGGNCCY 2 cut(s) 419, 542
EcoO65I GGTNACC 3 cut(s) 451, 472, 493
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 6 cut(s) 538, 594, 649, 727, 786, 1015
EcoT14I CCWWGG 2 cut(s) 271, 1068
ErhI CCWWGG 2 cut(s) 271, 1068
FaeI CATG 4 cut(s) 671, 686, 1060, 1072
FaqI GGGAC 1 cut(s) 432
FatI CATG 4 cut(s) 667, 682, 1056, 1068
FauNDI CATATG 1 cut(s) 1107
Fnu4HI GCNGC 4 cut(s) 84, 535, 581, 1074
FokI GGATG 6 cut(s) 278, 763, 854, 893, 902, 974
Fsp4HI GCNGC 4 cut(s) 84, 535, 581, 1074
FspBI CTAG 3 cut(s) 338, 795, 900
GlaI GCGC 1 cut(s) 161
GluI GCNGC 4 cut(s) 84, 535, 581, 1074
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 9 cut(s) 270, 431, 603, 654, 711, 732, 894, 1020, 1067
HapII CCGG 7 cut(s) 428, 442, 456, 470, 477, 491, 498
HgaI GACGC 1 cut(s) 631
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 4 cut(s) 671, 686, 1060, 1072
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 611
HpaII CCGG 7 cut(s) 428, 442, 456, 470, 477, 491, 498
HphI GGTGA 5 cut(s) 287, 445, 466, 487, 827
Hpy166II GTNNAC 2 cut(s) 835, 1049
Hpy188I TCNGA 8 cut(s) 39, 194, 207, 234, 319, 512, 1032, 1124
Hpy188III TCNNGA 5 cut(s) 768, 874, 950, 982, 1082
Hpy8I GTNNAC 2 cut(s) 835, 1049
Hpy99I CGWCG 2 cut(s) 530, 647
HpyAV CCTTC 3 cut(s) 583, 871, 979
HpyCH4III ACNGT 2 cut(s) 530, 632
HpyCH4IV ACGT 1 cut(s) 933
HpyCH4V TGCA 6 cut(s) 53, 83, 534, 572, 1100, 1111
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 267, 1073
HpyF3I CTNAG 4 cut(s) 36, 121, 170, 1037
HpySE526I ACGT 1 cut(s) 933
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 4 cut(s) 671, 686, 1060, 1072
HspAI GCGC 1 cut(s) 160
KflI GGGWCCC 1 cut(s) 419
KroI GCCGGC 1 cut(s) 427
KroNI GCCGGC 1 cut(s) 429
Kzo9I GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 4 cut(s) 95, 546, 592, 1060
LweI GCATC 3 cut(s) 62, 378, 741
MaeI CTAG 3 cut(s) 338, 795, 900
MaeII ACGT 1 cut(s) 933
MaeIII GTNAC 6 cut(s) 24, 369, 451, 472, 493, 853
MalI GATC 7 cut(s) 33, 41, 126, 402, 842, 915, 1034
MboI GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
MboII GAAGA 6 cut(s) 85, 221, 290, 375, 508, 598
MflI RGATCY 3 cut(s) 39, 124, 1032
MhlI GDGCHC 1 cut(s) 666
MlsI TGGCCA 2 cut(s) 270, 732
MluCI AATT 3 cut(s) 14, 133, 219
MluNI TGGCCA 2 cut(s) 270, 732
MlyI GAGTC 3 cut(s) 32, 522, 683
MmeI TCCRAC 5 cut(s) 230, 304, 376, 867, 952
Mox20I TGGCCA 2 cut(s) 270, 732
MroNI GCCGGC 1 cut(s) 427
MroXI GAANNNNTTC 1 cut(s) 993
MscI TGGCCA 2 cut(s) 270, 732
MslI CAYNNNNRTG 2 cut(s) 381, 779
Msp20I TGGCCA 2 cut(s) 270, 732
MspI CCGG 7 cut(s) 428, 442, 456, 470, 477, 491, 498
MspR9I CCNGG 6 cut(s) 540, 596, 651, 729, 788, 1017
MvaI CCWGG 6 cut(s) 540, 596, 651, 729, 788, 1017
MwoI GCNNNNNNNGC 3 cut(s) 59, 267, 1073
NaeI GCCGGC 1 cut(s) 429
NcoI CCATGG 1 cut(s) 1068
NdeI CATATG 1 cut(s) 1107
NdeII GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
NgoMIV GCCGGC 1 cut(s) 427
NlaIII CATG 4 cut(s) 671, 686, 1060, 1072
NlaIV GGNNCC 2 cut(s) 420, 421
NmeAIII GCCGAG 2 cut(s) 585, 597
NmuCI GTSAC 6 cut(s) 24, 369, 451, 472, 493, 853
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 993
PfeI GAWTC 9 cut(s) 4, 314, 445, 466, 487, 771, 940, 994, 1085
PflMI CCANNNNNTGG 2 cut(s) 181, 1016
PinAI ACCGGT 3 cut(s) 455, 476, 497
PkrI GCNGC 4 cut(s) 85, 536, 582, 1075
PleI GAGTC 3 cut(s) 31, 521, 682
PpsI GAGTC 3 cut(s) 31, 521, 682
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 2 cut(s) 419, 542
Psp5II RGGWCCY 2 cut(s) 419, 542
Psp6I CCWGG 6 cut(s) 538, 594, 649, 727, 786, 1015
PspEI GGTNACC 3 cut(s) 451, 472, 493
PspGI CCWGG 6 cut(s) 538, 594, 649, 727, 786, 1015
PspN4I GGNNCC 2 cut(s) 420, 421
PspPI GGNCC 6 cut(s) 419, 542, 592, 628, 1019, 1046
PspPPI RGGWCCY 2 cut(s) 419, 542
PstNI CAGNNNCTG 2 cut(s) 545, 1016
PsuI RGATCY 3 cut(s) 39, 124, 1032
RseI CAYNNNNRTG 2 cut(s) 381, 779
SatI GCNGC 4 cut(s) 84, 535, 581, 1074
Sau3AI GATC 7 cut(s) 31, 39, 124, 400, 840, 913, 1032
Sau96I GGNCC 6 cut(s) 419, 542, 592, 628, 1019, 1046
SchI GAGTC 3 cut(s) 32, 522, 683
ScrFI CCNGG 6 cut(s) 540, 596, 651, 729, 788, 1017
SduI GDGCHC 1 cut(s) 666
SfaNI GCATC 3 cut(s) 62, 378, 741
SfcI CTRYAG 3 cut(s) 57, 546, 705
SgrAI CRCCGGYG 1 cut(s) 497
SinI GGWCC 5 cut(s) 419, 542, 592, 628, 1046
SmiMI CAYNNNNRTG 2 cut(s) 381, 779
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SnaBI TACGTA 1 cut(s) 934
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 3 cut(s) 14, 133, 219
SspI AATATT 1 cut(s) 804
SspMI CTAG 3 cut(s) 338, 795, 900
StyD4I CCNGG 6 cut(s) 538, 594, 649, 727, 786, 1015
StyI CCWWGG 2 cut(s) 271, 1068
TaaI ACNGT 2 cut(s) 530, 632
TaiI ACGT 1 cut(s) 936
TaqI TCGA 6 cut(s) 21, 30, 519, 525, 645, 983
TasI AATT 3 cut(s) 14, 133, 219
TfiI GAWTC 9 cut(s) 4, 314, 445, 466, 487, 771, 940, 994, 1085
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 6 cut(s) 24, 369, 451, 472, 493, 853
TseI GCWGC 4 cut(s) 83, 534, 580, 1073
Tsp45I GTSAC 6 cut(s) 24, 369, 451, 472, 493, 853
TspDTI ATGAA 4 cut(s) 7, 17, 738, 1073
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 564
Van91I CCANNNNNTGG 2 cut(s) 181, 1016
VpaK11BI GGWCC 5 cut(s) 419, 542, 592, 628, 1046
XagI CCTNNNNNAGG 1 cut(s) 875
XapI RAATTY 2 cut(s) 14, 133
XmnI GAANNNNTTC 1 cut(s) 993
XspI CTAG 3 cut(s) 338, 795, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.