Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Reverse (-)

44217504 .. 44223587

Gene Structure 6084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG359700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAATCCTATGGAATTCATCGAGTCACTCGATCCTCAGATCCTTGTGGGTGCATCTGTAGCTTTTGTTGTCATTGTAGTTGCAGCTTTTCTCTTCTCCTCCAAGAAGCCCAAAGGTTGCTTAGATCCCCAGAATTTCAAGGACTTCAAACTTGTCAAGCGCACACAACTGAGCCACAATGTGGCAAAGTTCAGATTTGAACTTCCGACACCGACTTCAATTTTAGGTCTTCCGATTGGACAACACATAAGTTGTAGGGGCAAGGATGGCCAAGGTGAAGAGGTTATCAAACCATATACCCCAACCACATTGGATTCTGATGTTGGATACTTTGAACTAGTGATAAAGATGTATCCTCAAGGAAGAATGTCACACCATTTCCGTGAGATGCGTGTTGGAGATCATCTTGCTGTCAAGGGACCCAAGGATGAGTTGGATGGCCTTGCTAGAACTTACCCTGATCGCTTCCAAATCTACTACGTATTGAATCAGCCTCCTGAAGTATGGGATGGTGGTGTTGGATTTGTCTCGAAGGAAATGATTCAAACTCACTTGCCAGCCCCTGGCCCTGATATTCAGATCCTAAGATGTGGTCCACCACCCATGAACAAGGCCATGGCTGCTCATCTTGAATCACTTGAATATGCACCTCATATGCAGTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

223

Amino Acids

25.05

Weight (kDa)

6.7

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_6	PF00970	49 - 144	4.7e-32	Oxidoreductase FAD-binding domain
NAD_binding_1	PF00175	142 - 206	1.1e-11	Oxidoreductase NAD-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	181, 563
AclWI	GGATC	4 cut(s)	26, 34, 119, 574
AcoI	YGGCCR	1 cut(s)	268
AcsI	RAATTY	2 cut(s)	14, 133
AcuI	CTGAAG	1 cut(s)	519
AdeI	CACNNNGTG	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	181, 563
AgsI	TTSAA	9 cut(s)	139, 148, 200, 219, 335, 487, 545, 632, 641
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	2 cut(s)	62, 86
AluI	AGCT	2 cut(s)	62, 86
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	4 cut(s)	26, 34, 119, 574
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	4 cut(s)	268, 439, 565, 612
ApeKI	GCWGC	2 cut(s)	83, 620
ApoI	RAATTY	2 cut(s)	14, 133
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	3 cut(s)	419, 566, 593
AsuHPI	GGTGA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	419, 593
BalI	TGGCCA	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	95, 607
BccI	CCATC	3 cut(s)	260, 431, 503
BciT130I	CCWGG	1 cut(s)	564
BciVI	GTATCC	2 cut(s)	320, 363
BcoDI	GTCTC	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	2 cut(s)	338, 447
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	2 cut(s)	320, 363
BisI	GCNGC	2 cut(s)	84, 621
BlsI	GCNGC	2 cut(s)	85, 622
Bme1390I	CCNGG	1 cut(s)	564
Bme18I	GGWCC	2 cut(s)	419, 593
BmgT120I	GGNCC	3 cut(s)	419, 566, 593
BmiI	GGNNCC	2 cut(s)	420, 421
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	2 cut(s)	62, 378
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	342
BsaAI	YACGTR	1 cut(s)	481
BsaJI	CCNNGG	4 cut(s)	271, 423, 562, 615
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 563
Bse1I	ACTGG	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	4 cut(s)	271, 423, 562, 615
BseGI	GGATG	4 cut(s)	271, 433, 442, 514
BseLI	CCNNNNNNNGG	2 cut(s)	181, 563
BseMII	CTCAG	2 cut(s)	50, 161
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	95, 607
BshFI	GGCC	4 cut(s)	270, 441, 567, 614
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	181, 563
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	432
BsnI	GGCC	4 cut(s)	270, 441, 567, 614
Bsp143I	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
Bsp19I	CCATGG	1 cut(s)	615
BspANI	GGCC	4 cut(s)	270, 441, 567, 614
BspCNI	CTCAG	2 cut(s)	49, 162
BspLI	GGNNCC	2 cut(s)	420, 421
BspPI	GGATC	4 cut(s)	26, 34, 119, 574
BsrI	ACTGG	1 cut(s)	664
BssECI	CCNNGG	4 cut(s)	271, 423, 562, 615
BssMI	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
BssT1I	CCWWGG	3 cut(s)	271, 423, 615
Bst2UI	CCWGG	1 cut(s)	564
Bst6I	CTCTTC	2 cut(s)	98, 273
BstBAI	YACGTR	1 cut(s)	481
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	36, 121, 170, 584
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	4 cut(s)	271, 433, 442, 514
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	6 cut(s)	34, 42, 127, 403, 463, 582
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 267, 620
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	57
BstSNI	TACGTA	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	95, 607
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	3 cut(s)	39, 124, 579
BstYI	RGATCY	3 cut(s)	39, 124, 579
BsuI	GTATCC	2 cut(s)	320, 363
BsuRI	GGCC	4 cut(s)	270, 441, 567, 614
BtgI	CCRYGG	1 cut(s)	615
BtsCI	GGATG	4 cut(s)	271, 433, 442, 514
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	3 cut(s)	419, 566, 593
CviAII	CATG	2 cut(s)	604, 616
DdeI	CTNAG	4 cut(s)	36, 121, 170, 584
DpnI	GATC	6 cut(s)	33, 41, 126, 402, 462, 581
DpnII	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	98, 273
EarI	CTCTTC	2 cut(s)	98, 273
Eco105I	TACGTA	1 cut(s)	481
Eco130I	CCWWGG	3 cut(s)	271, 423, 615
Eco47I	GGWCC	2 cut(s)	419, 593
Eco57I	CTGAAG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	271, 423, 615
ErhI	CCWWGG	3 cut(s)	271, 423, 615
FaeI	CATG	2 cut(s)	607, 619
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	2 cut(s)	603, 615
FauNDI	CATATG	1 cut(s)	654
Fnu4HI	GCNGC	2 cut(s)	84, 621
FokI	GGATG	4 cut(s)	278, 440, 449, 521
Fsp4HI	GCNGC	2 cut(s)	84, 621
FspBI	CTAG	2 cut(s)	338, 447
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	84, 621
HaeIII	GGCC	4 cut(s)	270, 441, 567, 614
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	607, 619
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	6 cut(s)	4, 23, 314, 487, 541, 632
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	7 cut(s)	39, 194, 207, 234, 319, 579, 671
Hpy188III	TCNNGA	3 cut(s)	497, 529, 629
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	1 cut(s)	526
HpyCH4IV	ACGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	53, 83, 647, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 267, 620
HpyF3I	CTNAG	4 cut(s)	36, 121, 170, 584
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	2 cut(s)	607, 619
HspAI	GCGC	1 cut(s)	160
KflI	GGGWCCC	1 cut(s)	419
Kzo9I	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
LpnPI	CCDG	7 cut(s)	143, 471, 510, 549, 570, 576, 582
Lsp1109I	GCAGC	2 cut(s)	95, 607
LweI	GCATC	2 cut(s)	62, 378
MaeI	CTAG	2 cut(s)	338, 447
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	2 cut(s)	24, 369
MalI	GATC	6 cut(s)	33, 41, 126, 402, 462, 581
MboI	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
MboII	GAAGA	4 cut(s)	85, 221, 290, 375
MflI	RGATCY	3 cut(s)	39, 124, 579
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	3 cut(s)	14, 133, 219
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	5 cut(s)	230, 304, 376, 414, 499
MnlI	CCTC	6 cut(s)	45, 109, 274, 366, 504, 660
Mox20I	TGGCCA	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	59, 267, 620
NcoI	CCATGG	1 cut(s)	615
NdeI	CATATG	1 cut(s)	654
NdeII	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
NlaIII	CATG	2 cut(s)	607, 619
NlaIV	GGNNCC	2 cut(s)	420, 421
NmuCI	GTSAC	2 cut(s)	24, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	5 cut(s)	4, 314, 487, 541, 632
PflMI	CCANNNNNTGG	2 cut(s)	181, 563
PkrI	GCNGC	2 cut(s)	85, 622
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	481
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	420, 421
PspPI	GGNCC	3 cut(s)	419, 566, 593
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	3 cut(s)	39, 124, 579
RseI	CAYNNNNRTG	1 cut(s)	381
SatI	GCNGC	2 cut(s)	84, 621
Sau3AI	GATC	6 cut(s)	31, 39, 124, 400, 460, 579
Sau96I	GGNCC	3 cut(s)	419, 566, 593
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	564
SetI	ASST	8 cut(s)	64, 88, 118, 229, 277, 285, 483, 652
SfaNI	GCATC	2 cut(s)	62, 378
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	2 cut(s)	419, 593
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SnaBI	TACGTA	1 cut(s)	481
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	3 cut(s)	14, 133, 219
SspMI	CTAG	2 cut(s)	338, 447
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	3 cut(s)	271, 423, 615
TaiI	ACGT	1 cut(s)	483
TaqI	TCGA	3 cut(s)	21, 30, 530
TasI	AATT	3 cut(s)	14, 133, 219
TfiI	GAWTC	5 cut(s)	4, 314, 487, 541, 632
TseFI	GTSAC	2 cut(s)	24, 369
TseI	GCWGC	2 cut(s)	83, 620
Tsp45I	GTSAC	2 cut(s)	24, 369
TspDTI	ATGAA	3 cut(s)	7, 17, 620
TspGWI	ACGGA	1 cut(s)	371
Van91I	CCANNNNNTGG	2 cut(s)	181, 563
VpaK11BI	GGWCC	2 cut(s)	419, 593
XapI	RAATTY	2 cut(s)	14, 133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	338, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.