Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003390

Physical Location & Seq

Genomic Coordinates Forward (+)

27907334 .. 27909432

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0253400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAAATTGCGGGTATTACAATGACATACAAGAATTCGCTACTGGTGGTCAAGACCTATTTGTAAAGATGGTTACCTCAGAATTAGGTGACATAAAGACAAACAAGAGATCTAGCATGAAGAAGCGGGTGGCTATCACAGTCAGCTTTGGGTTATTAGTCATGGGAGTGCTTATACTAGGATTGGGCACGTTGAAAGAAGGGGAAGACATAGCAGTGAAAAGGCTTTCAAAATGTTCTGGACAAGGAATAAAAGAATTCATGAATGAAGTAATGTTGATTGCTAAACTCCAGCACAGAAATCTTGTAAAGCTTCTTGGTTGCTGCGTTGAAGGAGATGAAAAAATGTTAATTTATGAATACATGCCCAATAGAAGCTTGGACTACTTCATATATGATGATACAAGAAGTAAAGAGCTTGGTTGGGATCAACGCATCAACATTATTGGCGGAATAGCTCGAGGCCTTCTCTATCTTCATCAAGATTCTAGACTGAGGATCATCCATAGAGATCTTAAAACTGGTAATGTTTTACTAGATAAAGATATGAACCCAAAAATATCTGATTTTGGGACGGCTAGAGCATTCAGAGGAGATCAAACAGCGGAAAATACTAAGACCGTGGTTGGGACATATGGTTATATGTCTCCTGAGTATGTGGTTGATGGGCTCTTCTCAATCAAGTCTGATGTCTATAGCTTCGGTGTCATGGTATTGGAGATAGTGAGTGGGAAGAAGAACAGGGGATTCATTCATCCAGACCACCAACTTAACCTTCTAGGACATGTATGGACTCTATGGACTGAAGGAAGATCATTGGAAGTAATGGATAAGAAGTTAGATGGCTCCTATGCTCTAACAGTAGTGTCACGATGCATTCACATAGCTCTGTTGTGTGTGCAACAACAACCAGAAGATAGGCCAAACATGGCATCTGTGGTCATAATGTTGGGAAGTGAGGGTTCATTGCCTGCACCAAAGCAACCTGGTTTCTTCACTGAAAGGTATCCGTTTGAAGCAGAGAACTCTTCATCAAACAATTTGGAATCACATACAATAAATGGCATGAGTATAGCACAGTTAGAGGCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004128 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009505 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016653 GO:0022900 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

FAD_binding_6 NAD_binding_1

Protein Analysis

364

Amino Acids

40.81

Weight (kDa)

6.47

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	54 - 314	1.4e-44	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	66 - 313	4.8e-40	Protein kinase domain
DUF3403	PF11883	320 - 364	1.9e-10	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17770
fragaria_vesca	FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_1g29800 FvH4_3g27250 FvH4_3g27250 FvH4_3g27250
malus_domestica	MD12G1013300.v1.1 MD14G1010800.v1.1
prunus_persica	Prupe.6G154300_v2.0.a1 Prupe.7G017700_v2.0.a1
pyrus_communis	pycom11g15660 pycom12g01060 pycom14g00920
rosa_chinensis	RchiOBHm_Chr3g0495881 RchiOBHm_Chr5g0049861
rosa_laevigata	RLG00000022583 RLG00000034658
rosa_multiflora	Rmu_co8449909.1_g000001 Rmu_sc0012596.1_g000002
rosa_roxburghii	Rroxscaffold_1G00031500 Rroxscaffold_6G00389950
rosa_rugosa	Rorug03G0276800 Rorug05G0253400
rosa_samantha	Rh3AG324500 Rh3BG360500 Rh3CG356700 Rh3DG359700 Rh5BG338800 Rh5DG351200
rosa_wichuraiana	Rw3G028350 Rw5G031000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	12, 127, 450, 605
AclWI	GGATC	2 cut(s)	435, 506
AcsI	RAATTY	2 cut(s)	35, 257
AcuI	CTGAAG	1 cut(s)	825
AfiI	CCNNNNNNNGG	1 cut(s)	627
AflIII	ACRYGT	1 cut(s)	784
AgsI	TTSAA	4 cut(s)	196, 231, 332, 1016
AjnI	CCWGG	1 cut(s)	985
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AluBI	AGCT	7 cut(s)	147, 313, 378, 418, 458, 699, 887
AluI	AGCT	7 cut(s)	147, 313, 378, 418, 458, 699, 887
Alw26I	GTCTC	1 cut(s)	651
AlwI	GGATC	2 cut(s)	435, 506
Ama87I	CYCGRG	1 cut(s)	459
AoxI	GGCC	2 cut(s)	463, 920
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	2 cut(s)	35, 257
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	459
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	3 cut(s)	64, 659, 836
BceAI	ACGGC	1 cut(s)	591
BciT130I	CCWGG	1 cut(s)	987
BciVI	GTATCC	1 cut(s)	1017
BcoDI	GTCTC	1 cut(s)	651
BfaI	CTAG	6 cut(s)	114, 179, 489, 536, 579, 779
BfmI	CTRYAG	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	1017
BglII	AGATCT	2 cut(s)	110, 511
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	987
BmeT110I	CYCGRG	1 cut(s)	459
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	1 cut(s)	987
BmsI	GCATC	3 cut(s)	444, 863, 941
BpiI	GAAGAC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	453, 485
BpmI	CTGGAG	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	2 cut(s)	49, 526
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	2 cut(s)	501, 754
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	3 cut(s)	93, 485, 642
BseNI	ACTGG	2 cut(s)	49, 526
BseRI	GAGGAG	1 cut(s)	606
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	465, 922
BsiHKCI	CYCGRG	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	586, 643
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	1 cut(s)	651
BsmFI	GGGAC	2 cut(s)	586, 643
BsmI	GAATGC	2 cut(s)	584, 876
BsnI	GGCC	2 cut(s)	465, 922
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	191, 672
Bsp143I	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
BspACI	CCGC	4 cut(s)	12, 127, 450, 605
BspANI	GGCC	2 cut(s)	465, 922
BspCNI	CTCAG	3 cut(s)	92, 486, 643
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	435, 506
BspQI	GCTCTTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	965
BsrI	ACTGG	2 cut(s)	49, 526
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	4 cut(s)	142, 622, 862, 1080
Bst6I	CTCTTC	2 cut(s)	677, 1033
BstC8I	GCNNGC	1 cut(s)	972
BstDEI	CTNAG	4 cut(s)	79, 494, 615, 651
BstDSI	CCRYGG	1 cut(s)	621
BstEII	GGTNACC	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	501, 754
BstKTI	GATC	6 cut(s)	113, 430, 501, 514, 598, 815
BstMAI	GTCTC	1 cut(s)	651
BstMBI	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
BstNI	CCWGG	1 cut(s)	987
BstNSI	RCATGY	2 cut(s)	367, 788
BstPI	GGTNACC	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	985
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	311
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	110, 511
BstYI	RGATCY	2 cut(s)	110, 511
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	2 cut(s)	465, 922
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	2 cut(s)	501, 754
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	222, 996
Cac8I	GCNNGC	1 cut(s)	972
CciI	TCATGA	1 cut(s)	261
CsiI	ACCWGGT	1 cut(s)	985
CviAII	CATG	8 cut(s)	118, 163, 262, 364, 709, 785, 928, 1066
DdeI	CTNAG	4 cut(s)	79, 494, 615, 651
DpnI	GATC	6 cut(s)	112, 429, 500, 513, 597, 814
DpnII	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
Eam1104I	CTCTTC	2 cut(s)	677, 1033
EarI	CTCTTC	2 cut(s)	677, 1033
EciI	GGCGGA	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	459
Eco91I	GGTNACC	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	73
EcoRI	GAATTC	2 cut(s)	35, 257
EcoRII	CCWGG	1 cut(s)	985
EcoT22I	ATGCAT	1 cut(s)	878
EcoT38I	GRGCYC	1 cut(s)	672
FaeI	CATG	8 cut(s)	121, 166, 265, 367, 712, 788, 931, 1069
FaqI	GGGAC	2 cut(s)	586, 643
FatI	CATG	8 cut(s)	117, 162, 261, 363, 708, 784, 927, 1065
FauI	CCCGC	2 cut(s)	5, 120
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	2 cut(s)	488, 741
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	6 cut(s)	114, 179, 489, 536, 579, 779
GluI	GCNGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	465, 922
Hin1II	CATG	8 cut(s)	121, 166, 265, 367, 712, 788, 931, 1069
HindIII	AAGCTT	2 cut(s)	311, 376
HinfI	GANTC	4 cut(s)	485, 747, 793, 1046
HphI	GGTGA	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	82, 565, 590, 688
Hpy188III	TCNNGA	8 cut(s)	53, 240, 262, 482, 489, 650, 758, 870
HpyAV	CCTTC	5 cut(s)	194, 326, 476, 785, 800
HpyCH4III	ACNGT	4 cut(s)	142, 622, 862, 1080
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	876, 901, 974
HpyF3I	CTNAG	4 cut(s)	79, 494, 615, 651
HpySE526I	ACGT	1 cut(s)	191
Hsp92II	CATG	8 cut(s)	121, 166, 265, 367, 712, 788, 931, 1069
Kzo9I	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	3 cut(s)	444, 863, 941
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	6 cut(s)	114, 179, 489, 536, 579, 779
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	73, 89, 867
MalI	GATC	6 cut(s)	112, 429, 500, 513, 597, 814
MboI	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
MflI	RGATCY	2 cut(s)	110, 511
MhlI	GDGCHC	2 cut(s)	191, 672
MluCI	AATT	6 cut(s)	7, 35, 83, 257, 351, 1039
MlyI	GAGTC	1 cut(s)	787
MnlI	CCTC	6 cut(s)	88, 455, 489, 584, 952, 1078
Mph1103I	ATGCAT	1 cut(s)	878
MseI	TTAA	3 cut(s)	350, 516, 771
MslI	CAYNNNNRTG	2 cut(s)	167, 215
MspA1I	CMGCKG	1 cut(s)	605
MspR9I	CCNGG	1 cut(s)	987
Mva1269I	GAATGC	2 cut(s)	584, 876
MvaI	CCWGG	1 cut(s)	987
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
NlaIII	CATG	8 cut(s)	121, 166, 265, 367, 712, 788, 931, 1069
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	2 cut(s)	89, 867
NsiI	ATGCAT	1 cut(s)	878
NspI	RCATGY	2 cut(s)	367, 788
PaeR7I	CTCGAG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	465
PciI	ACATGT	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	677
PctI	GAATGC	2 cut(s)	584, 876
PfeI	GAWTC	3 cut(s)	485, 747, 1046
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PscI	ACATGT	1 cut(s)	784
Psp6I	CCWGG	1 cut(s)	985
PspEI	GGTNACC	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	1 cut(s)	847
PspXI	VCTCGAGB	1 cut(s)	459
PsuI	RGATCY	2 cut(s)	110, 511
RseI	CAYNNNNRTG	2 cut(s)	167, 215
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	3 cut(s)	350, 516, 771
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	6 cut(s)	110, 427, 498, 511, 595, 812
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	987
SduI	GDGCHC	2 cut(s)	191, 672
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	3 cut(s)	444, 863, 941
SfcI	CTRYAG	1 cut(s)	694
Sfr274I	CTCGAG	1 cut(s)	459
SlaI	CTCGAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	167, 215
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	6 cut(s)	7, 35, 83, 257, 351, 1039
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	4 cut(s)	12, 127, 450, 605
SspMI	CTAG	6 cut(s)	114, 179, 489, 536, 579, 779
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	985
TaaI	ACNGT	4 cut(s)	142, 622, 862, 1080
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	460
TasI	AATT	6 cut(s)	7, 35, 83, 257, 351, 1039
TfiI	GAWTC	3 cut(s)	485, 747, 1046
Tru1I	TTAA	3 cut(s)	350, 516, 771
Tru9I	TTAA	3 cut(s)	350, 516, 771
TscAI	CASTG	2 cut(s)	222, 1003
TseFI	GTSAC	2 cut(s)	89, 867
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	2 cut(s)	89, 867
TspGWI	ACGGA	1 cut(s)	999
TspRI	CASTG	2 cut(s)	222, 1003
XapI	RAATTY	2 cut(s)	35, 257
XbaI	TCTAGA	1 cut(s)	488
XceI	RCATGY	2 cut(s)	367, 788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XhoI	CTCGAG	1 cut(s)	459
XspI	CTAG	6 cut(s)	114, 179, 489, 536, 579, 779
Zsp2I	ATGCAT	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.