AT5G18475

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
6129237 .. 6131120
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18475.1

Sequence Viewer

Length: 1521 bp
ATGCGCTTCACAACTTCGATAATCAATGAACATCGCCGGTTCTCATCGTCTTCACGATCATGGGTATCTCCCATTTGCTTCTCGGAGAAGAAGAAGAAACCAAGCCCACCACCAGAATCCTCTATCTCACCTGTGGAAACAAACCCCAAAACCAAGTTTATCTCTCACGAATCTGCTGTCAGTTTGATGAAACGAGAGAGAGATCCTCAGGGTGTGCTTGATATCTTCAACAAAGCTTCTCAGCAGAAAGGTTTTAACCATAACAATGCTACATACTCTGTTCTTTTAGATAATCTCGTTAGGCACAAGAAGTTTCTAGCTGTTGATGCCATTCTTCATCAGATGAAGTATGAGACTTGCAGGTTCCAAGAAAGTTTGTTTCTTAACCTGATGAGACATTTCTCCAGGTCTGATTTGCATGATAAAGTTATGGAGATGTTTAACTTGATTCAAGTGATTGCTCGTGTCAAGCCTTCTCTCAATGCCATTAGTACTTGTTTGAATCTCCTTATTGATTCAGGGGAGGTTAATTTGTCCCGGAAACTACTCTTGTATGCCAAACACAATCTTGGATTGCAGCCAAATACTTGCATTTTCAATATTCTAGTGAAGCACCACTGCAAGAATGGGGATATCAATTTTGCGTTTCTAGTTGTGGAGGAGATGAAAAGGTCTGGGATTTCGTATCCCAATTCGATCACTTACTCAACCCTTATGGACTGTCTGTTTGCACACTCGAGATCGAAAGAAGCGGTGGAATTGTTCGAGGATATGATCTCGAAAGAAGGGATTTCGCCAGACCCTGTGACTTTCAATGTTATGATCAACGGATTCTGTCGTGCAGGGGAAGTTGAGAGAGCCAAGAAGATTTTAGACTTCATGAAGAAGAATGGGTGCAACCCAAATGTGTACAATTACTCAGCTCTAATGAATGGGTTTTGTAAAGTGGGAAAGATTCAGGAAGCTAAACAAACTTTTGACGAGGTGAAGAAAACGGGGTTGAAACTCGACACTGTTGGTTATACCACATTGATGAACTGCTTTTGTAGAAATGGTGAAACTGATGAGGCTATGAAACTACTTGGAGAGATGAAAGCATCCAGATGCAGAGCTGATACATTAACTTATAATGTAATACTCAGGGGCTTGTCCAGCGAAGGAAGATCAGAGGAAGCTCTTCAGATGCTGGATCAATGGGGATCTGAAGGAGTTCATCTGAACAAAGGTAGTTATAGGATCATATTGAACGCGTTGTGTTGTAATGGTGAGCTCGAGAAAGCGGTGAAGTTTCTGAGTGTGATGTCTGAGAGAGGGATTTGGCCTCACCATGCTACTTGGAATGAATTGGTGGTTCGGCTTTGCGAATCCGGGTATACAGAAATCGGGGTTCGGGTTCTTATTGGATTTCTGAGGATAGGTCTCATACCAGGGCCCAAATCTTGGGGAGCTGTGGTTGAATCAATTTGTAAAGAGAGGAAGTTGGTGCATGTCTTTGAACTGCTTGATTCTTTAGTTTCTTAA

Protein Analysis

506

Amino Acids

57.29

Weight (kDa)

8.91

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 191 - 287 1e-05 Fungal tetratrico peptide repeats
PPR_1 PF12854 191 - 223 1.2e-07 PPR repeat
PPR_2 PF13041 194 - 242 1.9e-12 PPR repeat family
PPR_2 PF13041 230 - 280 7.3e-15 PPR repeat family
PPR_long PF17177 249 - 386 1.5e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 255 - 313 1.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 263 - 295 8.4e-13 PPR repeat
PPR_2 PF13041 266 - 315 1.2e-17 PPR repeat family
PPR PF01535 269 - 299 2.6e-09 PPR repeat
PPR_1 PF12854 297 - 328 2.9e-09 PPR repeat
PPR_2 PF13041 301 - 345 8.4e-10 PPR repeat family
TPR_24 PF23276 304 - 395 7.9e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 326 - 380 7.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 333 - 365 1.9e-11 PPR repeat
PPR_2 PF13041 337 - 384 8.9e-15 PPR repeat family
PPR PF01535 341 - 369 3.3e-08 PPR repeat
PPR_2 PF13041 372 - 419 1.1e-08 PPR repeat family
PPR_1 PF12854 403 - 434 3.4e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1128
Acc36I ACCTGC 1 cut(s) 351
AccB7I CCANNNNNTGG 1 cut(s) 1440
AccI GTMKAC 1 cut(s) 1373
AccII CGCG 1 cut(s) 1250
AciI CCGC 2 cut(s) 752, 1280
AclWI GGATC 4 cut(s) 197, 1197, 1207, 1244
AcuI CTGAAG 2 cut(s) 1163, 1224
AfaI GTAC 2 cut(s) 493, 911
AfiI CCNNNNNNNGG 1 cut(s) 1440
AflIII ACRYGT 1 cut(s) 1248
AgsI TTSAA 9 cut(s) 229, 452, 502, 598, 814, 1003, 1246, 1457, 1496
AjnI CCWGG 2 cut(s) 404, 1426
AluBI AGCT 8 cut(s) 236, 320, 923, 965, 1112, 1175, 1270, 1448
AluI AGCT 8 cut(s) 236, 320, 923, 965, 1112, 1175, 1270, 1448
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 3 cut(s) 347, 388, 1424
AlwI GGATC 4 cut(s) 197, 1197, 1207, 1244
AlwNI CAGNNNCTG 2 cut(s) 803, 1186
Ama87I CYCGRG 2 cut(s) 736, 1271
AoxI GGCC 2 cut(s) 1319, 1430
ApaI GGGCCC 1 cut(s) 1434
ApeKI GCWGC 1 cut(s) 577
ArsI GACNNNNNNTTYG 4 cut(s) 162, 194, 710, 742
Asp700I GAANNNNTTC 2 cut(s) 1176, 1209
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 1430, 1431
AsuC2I CCSGG 2 cut(s) 538, 1369
AsuHPI GGTGA 6 cut(s) 120, 997, 1067, 1277, 1294, 1316
AvaI CYCGRG 2 cut(s) 736, 1271
AxyI CCTNAGG 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 1434
BanII GRGCYC 2 cut(s) 1272, 1434
BauI CACGAG 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 1272
BbvI GCAGC 1 cut(s) 589
BciT130I CCWGG 2 cut(s) 406, 1428
BciVI GTATCC 1 cut(s) 696
BclI TGATCA 1 cut(s) 822
BcnI CCSGG 2 cut(s) 538, 1369
BcoDI GTCTC 3 cut(s) 347, 388, 1424
BfaI CTAG 3 cut(s) 317, 605, 650
BfuAI ACCTGC 1 cut(s) 351
BfuI GTATCC 1 cut(s) 696
BisI GCNGC 1 cut(s) 578
BlsI GCNGC 1 cut(s) 579
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 4 cut(s) 406, 538, 1369, 1428
BmeT110I CYCGRG 2 cut(s) 736, 1271
BmgT120I GGNCC 2 cut(s) 1430, 1431
BmiI GGNNCC 2 cut(s) 365, 1432
BmrFI CCNGG 4 cut(s) 406, 538, 1369, 1428
BmsI GCATC 4 cut(s) 316, 1094, 1106, 1173
BpiI GAAGAC 1 cut(s) 42
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpmI CTGGAG 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 538, 1369
BsaI GGTCTC 1 cut(s) 1424
BsaJI CCNNGG 1 cut(s) 1427
BsaXI ACNNNNNCTCC 2 cut(s) 1437, 1467
Bsc4I CCNNNNNNNGG 1 cut(s) 1440
Bse118I RCCGGY 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 207
BseBI CCWGG 2 cut(s) 406, 1428
BseDI CCNNGG 1 cut(s) 1427
BseGI GGATG 1 cut(s) 1097
BseLI CCNNNNNNNGG 1 cut(s) 1440
BseMII CTCAG 7 cut(s) 221, 254, 933, 1153, 1283, 1296, 1400
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 1434
BseXI GCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 861
Bsh1236I CGCG 1 cut(s) 1250
BshFI GGCC 2 cut(s) 1321, 1432
BsiHKAI GWGCWC 1 cut(s) 1272
BsiHKCI CYCGRG 2 cut(s) 736, 1271
BsiSI CCGG 3 cut(s) 37, 538, 1368
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 1440
BsmAI GTCTC 3 cut(s) 347, 388, 1424
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 2 cut(s) 1321, 1432
Bso31I GGTCTC 1 cut(s) 1424
BsoBI CYCGRG 2 cut(s) 736, 1271
Bsp120I GGGCCC 1 cut(s) 1430
Bsp1286I GDGCHC 2 cut(s) 1272, 1434
Bsp1407I TGTACA 1 cut(s) 909
BspACI CCGC 2 cut(s) 752, 1280
BspANI GGCC 2 cut(s) 1321, 1432
BspCNI CTCAG 7 cut(s) 220, 253, 932, 1152, 1284, 1297, 1401
BspFNI CGCG 1 cut(s) 1250
BspHI TCATGA 1 cut(s) 879
BspLI GGNNCC 2 cut(s) 365, 1432
BspMI ACCTGC 1 cut(s) 351
BspPI GGATC 4 cut(s) 197, 1197, 1207, 1244
BspQI GCTCTTC 1 cut(s) 1182
BspTNI GGTCTC 1 cut(s) 1424
BsrFI RCCGGY 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 909
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 1427
BssNAI GTATAC 1 cut(s) 1374
BssSI CACGAG 1 cut(s) 462
Bst1107I GTATAC 1 cut(s) 1374
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 406, 1428
Bst4CI ACNGT 2 cut(s) 722, 1015
Bst6I CTCTTC 1 cut(s) 1182
BstAUI TGTACA 1 cut(s) 909
BstDEI CTNAG 7 cut(s) 207, 240, 919, 1139, 1292, 1305, 1409
BstF5I GGATG 1 cut(s) 1097
BstFNI CGCG 1 cut(s) 1250
BstHHI GCGC 1 cut(s) 6
BstMAI GTCTC 3 cut(s) 347, 388, 1424
BstMWI GCNNNNNNNGC 2 cut(s) 326, 1152
BstNI CCWGG 2 cut(s) 406, 1428
BstNSI RCATGY 1 cut(s) 1490
BstSCI CCNGG 4 cut(s) 404, 536, 1367, 1426
BstSLI GKGCMC 1 cut(s) 1434
BstUI CGCG 1 cut(s) 1250
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 2 cut(s) 202, 1199
BstYI RGATCY 2 cut(s) 202, 1199
BstZ17I GTATAC 1 cut(s) 1374
Bsu36I CCTNAGG 1 cut(s) 207
BsuI GTATCC 1 cut(s) 696
BsuRI GGCC 2 cut(s) 1321, 1432
BtgZI GCGATG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 1097
BtsI GCAGTG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 616, 1011
BveI ACCTGC 1 cut(s) 351
CaiI CAGNNNCTG 2 cut(s) 803, 1186
CciI TCATGA 1 cut(s) 879
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 1430, 1431
Csp6I GTAC 2 cut(s) 492, 910
CviAII CATG 5 cut(s) 60, 419, 880, 1328, 1487
CviQI GTAC 2 cut(s) 492, 910
DdeI CTNAG 7 cut(s) 207, 240, 919, 1139, 1292, 1305, 1409
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
Ecl136II GAGCTC 1 cut(s) 1270
Eco24I GRGCYC 2 cut(s) 1272, 1434
Eco31I GGTCTC 1 cut(s) 1424
Eco32I GATATC 2 cut(s) 223, 634
Eco53kI GAGCTC 1 cut(s) 1270
Eco57I CTGAAG 2 cut(s) 1163, 1224
Eco81I CCTNAGG 1 cut(s) 207
Eco88I CYCGRG 2 cut(s) 736, 1271
EcoICRI GAGCTC 1 cut(s) 1270
EcoO109I RGGNCCY 1 cut(s) 1430
EcoRII CCWGG 2 cut(s) 404, 1426
EcoRV GATATC 2 cut(s) 223, 634
EcoT38I GRGCYC 2 cut(s) 1272, 1434
FaeI CATG 5 cut(s) 63, 422, 883, 1331, 1490
FaqI GGGAC 1 cut(s) 520
FatI CATG 5 cut(s) 59, 418, 879, 1327, 1486
FbaI TGATCA 1 cut(s) 822
FblI GTMKAC 1 cut(s) 1373
Fnu4HI GCNGC 1 cut(s) 578
FokI GGATG 1 cut(s) 1084
FriOI GRGCYC 2 cut(s) 1272, 1434
Fsp4HI GCNGC 1 cut(s) 578
FspBI CTAG 3 cut(s) 317, 605, 650
GlaI GCGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 388
HaeIII GGCC 2 cut(s) 1321, 1432
HapII CCGG 3 cut(s) 37, 538, 1368
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 63, 422, 883, 1331, 1490
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HindIII AAGCTT 1 cut(s) 234
HpaII CCGG 3 cut(s) 37, 538, 1368
HphI GGTGA 6 cut(s) 120, 997, 1067, 1277, 1294, 1316
Hpy166II GTNNAC 2 cut(s) 910, 1374
Hpy188III TCNNGA 8 cut(s) 54, 167, 738, 778, 880, 959, 1101, 1273
Hpy8I GTNNAC 2 cut(s) 910, 1374
HpyAV CCTTC 4 cut(s) 483, 779, 1151, 1199
HpyCH4III ACNGT 2 cut(s) 722, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 1152
HpyF3I CTNAG 7 cut(s) 207, 240, 919, 1139, 1292, 1305, 1409
Hsp92II CATG 5 cut(s) 63, 422, 883, 1331, 1490
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 822
LguI GCTCTTC 1 cut(s) 1182
LmnI GCTCC 1 cut(s) 1445
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 4 cut(s) 316, 1094, 1106, 1173
MaeI CTAG 3 cut(s) 317, 605, 650
MaeIII GTNAC 1 cut(s) 805
MflI RGATCY 2 cut(s) 202, 1199
MhlI GDGCHC 2 cut(s) 1272, 1434
MluCI AATT 7 cut(s) 529, 637, 691, 758, 913, 1343, 1461
MluI ACGCGT 1 cut(s) 1248
MroXI GAANNNNTTC 2 cut(s) 1176, 1209
MseI TTAA 6 cut(s) 255, 384, 441, 528, 1121, 1519
MslI CAYNNNNRTG 4 cut(s) 58, 264, 1031, 1102
MspI CCGG 3 cut(s) 37, 538, 1368
MspR9I CCNGG 4 cut(s) 406, 538, 1369, 1428
MvaI CCWGG 2 cut(s) 406, 1428
MvnI CGCG 1 cut(s) 1250
MwoI GCNNNNNNNGC 2 cut(s) 326, 1152
NciI CCSGG 2 cut(s) 538, 1369
NlaIII CATG 5 cut(s) 63, 422, 883, 1331, 1490
NlaIV GGNNCC 2 cut(s) 365, 1432
NmuCI GTSAC 1 cut(s) 805
NspI RCATGY 1 cut(s) 1490
PaeR7I CTCGAG 2 cut(s) 736, 1271
PagI TCATGA 1 cut(s) 879
PciSI GCTCTTC 1 cut(s) 1182
PdmI GAANNNNTTC 2 cut(s) 1176, 1209
PflMI CCANNNNNTGG 1 cut(s) 1440
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 1 cut(s) 579
PsiI TTATAA 1 cut(s) 1128
Psp124BI GAGCTC 1 cut(s) 1272
Psp6I CCWGG 2 cut(s) 404, 1426
PspGI CCWGG 2 cut(s) 404, 1426
PspN4I GGNNCC 2 cut(s) 365, 1432
PspOMI GGGCCC 1 cut(s) 1430
PspPI GGNCC 2 cut(s) 1430, 1431
PstNI CAGNNNCTG 2 cut(s) 803, 1186
PsuI RGATCY 2 cut(s) 202, 1199
RsaI GTAC 2 cut(s) 493, 911
RsaNI GTAC 2 cut(s) 492, 910
RseI CAYNNNNRTG 4 cut(s) 58, 264, 1031, 1102
SacI GAGCTC 1 cut(s) 1272
SapI GCTCTTC 1 cut(s) 1182
SaqAI TTAA 6 cut(s) 255, 384, 441, 528, 1121, 1519
SatI GCNGC 1 cut(s) 578
Sau96I GGNCC 2 cut(s) 1430, 1431
ScaI AGTACT 1 cut(s) 493
ScrFI CCNGG 4 cut(s) 406, 538, 1369, 1428
SduI GDGCHC 2 cut(s) 1272, 1434
SfaNI GCATC 4 cut(s) 316, 1094, 1106, 1173
Sfr274I CTCGAG 2 cut(s) 736, 1271
SlaI CTCGAG 2 cut(s) 736, 1271
SmiMI CAYNNNNRTG 4 cut(s) 58, 264, 1031, 1102
SmlI CTYRAG 2 cut(s) 736, 1271
SmoI CTYRAG 2 cut(s) 736, 1271
Sse9I AATT 7 cut(s) 529, 637, 691, 758, 913, 1343, 1461
SsiI CCGC 2 cut(s) 752, 1280
SspI AATATT 1 cut(s) 601
SspMI CTAG 3 cut(s) 317, 605, 650
SstI GAGCTC 1 cut(s) 1272
StyD4I CCNGG 4 cut(s) 404, 536, 1367, 1426
TaaI ACNGT 2 cut(s) 722, 1015
TaqI TCGA 8 cut(s) 17, 695, 737, 743, 765, 779, 1008, 1272
TasI AATT 7 cut(s) 529, 637, 691, 758, 913, 1343, 1461
TatI WGTACW 2 cut(s) 491, 909
Tru1I TTAA 6 cut(s) 255, 384, 441, 528, 1121, 1519
Tru9I TTAA 6 cut(s) 255, 384, 441, 528, 1121, 1519
TscAI CASTG 2 cut(s) 623, 1018
TseFI GTSAC 1 cut(s) 805
TseI GCWGC 1 cut(s) 577
Tsp45I GTSAC 1 cut(s) 805
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 2 cut(s) 623, 1018
Van91I CCANNNNNTGG 1 cut(s) 1440
XceI RCATGY 1 cut(s) 1490
XcmI CCANNNNNNNNNTGG 1 cut(s) 623
XhoI CTCGAG 2 cut(s) 736, 1271
XmiI GTMKAC 1 cut(s) 1373
XmnI GAANNNNTTC 2 cut(s) 1176, 1209
XspI CTAG 3 cut(s) 317, 605, 650
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.