Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000281.1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

59380 .. 60498

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000281.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgcatgaaagagtacttgaaatgttctatgctatccagccagtagttcgggaaaagccatctctcaaatgcattagtacttgtttaaatctactgattgaagcgaatcaggttgatttggcccaacagtttctcatgcatttgaagaagagtcttaacttgaagctgaatacatgcattgtcaacatcttggttaagcaccattgcacaaatggggatcttgaatctgccttcgaggttgtgaaggaaatgaaaaagtctaagctttcctatcctaatttgattacttactcgactctaattgatggtttatgtcaaagtggaagactgacagaagcaatggacctgtttgaggaaatgatctcaaaggatcaaatattgcctgatgtgctaacgtacaacattttgattaatggtttttgccgtggtgggaaagttaatagggcaaggaagatattggattttatgaagagcaaaggatgcaacccaaatgtattcaattactcagatctgatgaatggattctgtaaggaggaaagattggaggagaccaaggagcttttggatgaaatgaagagctttggtatcaaaccagatacagttgtctacactactttaattgattgctactgtaggactgggagagttgacgaagcgatagagttgctcaaagagatgaaagaaagacggtgcaaagctgatactgtgactttcaatgtgatacttggaggactatgtagagaaggtagaattgaggatgcgcttgagatgctggacaaacttccttatgagggtatctatctgaataagggaagctacaggattgtgttgaattccttgtgtcagaaaggcgaactaaacaaagctaaagagttgttgagattgatgatgggtagggggtttgtaccacattatgcaacttcaaacgagttgctagttagcctttgtgaggctggaatggcagatgatgcaactatggttttatttggattggtggagttgggtttcaaaccactgcctgattcctgggctctttttgttgaatcaatttgcagagaaagaaagctgctgcctgcatttgaactgctcgatgaattagttaatgaagagtttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

372

Amino Acids

42.44

Weight (kDa)

5.44

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	606
AclWI	GGATC	2 cut(s)	225, 378
AcsI	RAATTY	1 cut(s)	832
AfaI	GTAC	4 cut(s)	15, 79, 398, 906
AfiI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
AjnI	CCWGG	1 cut(s)	1025
AluBI	AGCT	8 cut(s)	166, 265, 559, 579, 698, 816, 866, 1066
AluI	AGCT	8 cut(s)	166, 265, 559, 579, 698, 816, 866, 1066
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	225, 378
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	1066, 1069
ApoI	RAATTY	1 cut(s)	832
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	2 cut(s)	121, 343
AvaII	GGWCC	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BanII	GRGCYC	1 cut(s)	1033
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	1053, 1056
BccI	CCATC	3 cut(s)	67, 299, 883
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	1027
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	935
BfmI	CTRYAG	2 cut(s)	631, 817
BglII	AGATCT	1 cut(s)	508
BisI	GCNGC	2 cut(s)	1067, 1070
BlsI	GCNGC	2 cut(s)	1068, 1071
BmcAI	AGTACT	2 cut(s)	15, 79
Bme1390I	CCNGG	1 cut(s)	1027
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	121, 343
BmrFI	CCNGG	1 cut(s)	1027
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	4 cut(s)	470, 748, 759, 958
BmuI	ACTGGG	1 cut(s)	648
BpiI	GAAGAC	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	3 cut(s)	424, 552, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 791, 949
Bse1I	ACTGG	2 cut(s)	41, 643
Bse3DI	GCAATG	2 cut(s)	202, 345
BseBI	CCWGG	1 cut(s)	1027
BseDI	CCNNGG	3 cut(s)	424, 552, 1026
BseGI	GGATG	3 cut(s)	485, 571, 763
BseLI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
BseMI	GCAATG	2 cut(s)	202, 345
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	41, 643
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	2 cut(s)	1053, 1056
BshFI	GGCC	1 cut(s)	122
BslI	CCNNNNNNNGG	3 cut(s)	352, 791, 949
BsmAI	GTCTC	1 cut(s)	542
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	4 cut(s)	217, 360, 370, 508
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	518
BspPI	GGATC	2 cut(s)	225, 378
BspQI	GCTCTTC	2 cut(s)	464, 569
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	2 cut(s)	202, 345
BsrI	ACTGG	2 cut(s)	41, 643
BssECI	CCNNGG	3 cut(s)	424, 552, 1026
BssMI	GATC	4 cut(s)	217, 360, 370, 508
BssT1I	CCWWGG	1 cut(s)	552
Bst2UI	CCWGG	1 cut(s)	1027
Bst4CI	ACNGT	5 cut(s)	129, 601, 632, 690, 706
Bst6I	CTCTTC	4 cut(s)	143, 464, 569, 1101
BstAPI	GCANNNNNTGC	2 cut(s)	480, 968
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	2 cut(s)	261, 505
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	2 cut(s)	350, 947
BstF5I	GGATG	3 cut(s)	485, 571, 763
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	4 cut(s)	220, 363, 373, 511
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	4 cut(s)	217, 360, 370, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
BstNI	CCWGG	1 cut(s)	1027
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	1025
BstSFI	CTRYAG	2 cut(s)	631, 817
BstV1I	GCAGC	2 cut(s)	1053, 1056
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	2 cut(s)	217, 508
BstYI	RGATCY	2 cut(s)	217, 508
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	485, 571, 763
BtsI	GCAGTG	1 cut(s)	1013
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	1 cut(s)	1074
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	2 cut(s)	121, 343
Csp6I	GTAC	4 cut(s)	14, 78, 397, 905
CviAII	CATG	3 cut(s)	5, 136, 174
CviQI	GTAC	4 cut(s)	14, 78, 397, 905
DdeI	CTNAG	2 cut(s)	261, 505
DpnI	GATC	4 cut(s)	219, 362, 372, 510
DpnII	GATC	4 cut(s)	217, 360, 370, 508
DraI	TTTAAA	1 cut(s)	87
Eam1104I	CTCTTC	4 cut(s)	143, 464, 569, 1101
EarI	CTCTTC	4 cut(s)	143, 464, 569, 1101
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	1033
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	2 cut(s)	350, 947
EcoRI	GAATTC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	1025
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	4 cut(s)	6, 74, 141, 179
EcoT38I	GRGCYC	1 cut(s)	1033
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	3 cut(s)	8, 139, 177
FatI	CATG	3 cut(s)	4, 135, 173
FblI	GTMKAC	1 cut(s)	606
Fnu4HI	GCNGC	2 cut(s)	1067, 1070
FokI	GGATG	3 cut(s)	492, 578, 770
FriOI	GRGCYC	1 cut(s)	1033
Fsp4HI	GCNGC	2 cut(s)	1067, 1070
FspBI	CTAG	1 cut(s)	935
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	2 cut(s)	1067, 1070
HaeIII	GGCC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	763
Hin1II	CATG	3 cut(s)	8, 139, 177
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HincII	GTYRAC	2 cut(s)	184, 649
HindII	GTYRAC	2 cut(s)	184, 649
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	7 cut(s)	106, 151, 224, 295, 522, 1022, 1043
Hpy166II	GTNNAC	3 cut(s)	184, 607, 649
Hpy188I	TCNGA	4 cut(s)	508, 513, 804, 846
Hpy188III	TCNNGA	2 cut(s)	50, 221
Hpy8I	GTNNAC	3 cut(s)	184, 607, 649
HpyAV	CCTTC	3 cut(s)	238, 241, 737
HpyCH4III	ACNGT	5 cut(s)	129, 601, 632, 690, 706
HpyCH4IV	ACGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
HpyF3I	CTNAG	2 cut(s)	261, 505
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	8, 139, 177
HspAI	GCGC	1 cut(s)	761
Kzo9I	GATC	4 cut(s)	217, 360, 370, 508
LguI	GCTCTTC	2 cut(s)	464, 569
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	1053, 1056
LweI	GCATC	4 cut(s)	470, 748, 759, 958
MaeI	CTAG	1 cut(s)	935
MaeII	ACGT	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	706
MalI	GATC	4 cut(s)	219, 362, 372, 510
MboI	GATC	4 cut(s)	217, 360, 370, 508
MboII	GAAGA	7 cut(s)	157, 160, 336, 463, 481, 586, 1118
MflI	RGATCY	2 cut(s)	217, 508
MhlI	GDGCHC	1 cut(s)	1033
MluCI	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
MlyI	GAGTC	2 cut(s)	160, 289
MnlI	CCTC	8 cut(s)	229, 346, 526, 538, 722, 748, 784, 943
Mph1103I	ATGCAT	4 cut(s)	6, 74, 141, 179
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
MspR9I	CCNGG	1 cut(s)	1027
MvaI	CCWGG	1 cut(s)	1027
MwoI	GCNNNNNNNGC	5 cut(s)	388, 480, 769, 959, 968
NdeII	GATC	4 cut(s)	217, 360, 370, 508
NlaIII	CATG	3 cut(s)	8, 139, 177
NmuCI	GTSAC	1 cut(s)	706
NsiI	ATGCAT	4 cut(s)	6, 74, 141, 179
NspI	RCATGY	1 cut(s)	177
PciSI	GCTCTTC	2 cut(s)	464, 569
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	5 cut(s)	106, 224, 522, 1022, 1043
PkrI	GCNGC	2 cut(s)	1068, 1071
PleI	GAGTC	2 cut(s)	159, 289
PpsI	GAGTC	2 cut(s)	159, 289
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	1025
PspGI	CCWGG	1 cut(s)	1025
PspPI	GGNCC	2 cut(s)	121, 343
PsuI	RGATCY	2 cut(s)	217, 508
RsaI	GTAC	4 cut(s)	15, 79, 398, 906
RsaNI	GTAC	4 cut(s)	14, 78, 397, 905
SapI	GCTCTTC	2 cut(s)	464, 569
SaqAI	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
SatI	GCNGC	2 cut(s)	1067, 1070
Sau3AI	GATC	4 cut(s)	217, 360, 370, 508
Sau96I	GGNCC	2 cut(s)	121, 343
ScaI	AGTACT	2 cut(s)	15, 79
SchI	GAGTC	2 cut(s)	160, 289
ScrFI	CCNGG	1 cut(s)	1027
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	4 cut(s)	470, 748, 759, 958
SfcI	CTRYAG	2 cut(s)	631, 817
SinI	GGWCC	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	1025
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	129, 601, 632, 690, 706
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	3 cut(s)	234, 293, 1089
TasI	AATT	8 cut(s)	277, 300, 499, 618, 750, 832, 1047, 1094
TatI	WGTACW	2 cut(s)	13, 77
TfiI	GAWTC	5 cut(s)	106, 224, 522, 1022, 1043
Tru1I	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
Tru9I	TTAA	8 cut(s)	86, 156, 195, 411, 438, 617, 1101, 1117
TscAI	CASTG	1 cut(s)	1020
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	2 cut(s)	1066, 1069
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	9 cut(s)	21, 266, 482, 530, 582, 587, 692, 1107, 1119
TspRI	CASTG	1 cut(s)	1020
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	2 cut(s)	350, 947
XapI	RAATTY	1 cut(s)	832
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	2 cut(s)	209, 559
XmiI	GTMKAC	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	1 cut(s)	935
ZrmI	AGTACT	2 cut(s)	15, 79
Zsp2I	ATGCAT	4 cut(s)	6, 74, 141, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.