Rroxscaffold_5G00366500

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
48403556 .. 48405175
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366500.1

Sequence Viewer

Length: 1620 bp
ATGATCATCTGTTTAAGATCCTCATGCTCTTCAGATTGCAGGGCCCTTAGAACAGCTACAGTTTTCATGAATCTAAGGAGAGTTCATTTTAGTTGGTGCCGTTGGTTCGCTTCCTCTCCTTCGACAATCTCATCGTCTGTTTCATGGATCTCTCCTCTTCAGTTATCAAAATTCAATGCTCACAAACCAGATCCCCCTCCCGAAACCACAATTACAAGGACAGAAGCTAGGAGGAGATCCAAATATATATCTCACGATGCTGCCATCAACTTAATCAAACGAGAGACAGATCCACAGCATGCCTTGGAAATATTTAACATGGTTTCGGAGCAAAAGGGTTTCAACCACAATAATGCCACCTATGCAACTATCCTCAATAAGCTTGCTCAGAACAAGAAGTTCAAGGCTGTTGATGCAGTTCTCTATCAAATGAAGTATGATACCTGCAAATATCATGAGGGTATATTCCTTAATCTCATGAAGCATTTTTCAAAATCGTCTATGCATGAAAGAGTACTTGAAATGTTCTATGCTATCCAGCCAGTAGTTCGGGAAAAGCCATCTCTCAAATGCATTAGTACTTGTTTAAATCTACTGATTGAAGCGAATCAGGTTGATTTGGCCCAACAGTTTCTCATGCATTTGAAGAAGAGTCTTAACTTGAAGCTGAATACATGCATTGTCAACATCTTCGTTAAGCACCATTGCACAAATGGGGATCTTGAATCTGCCTTTGAGGTTGTGAAGGAAATGAAAAAGTCTAAGCTTTCCTATCCTAATTTGATTACTTACTCGACTCTAATTTATGGTTTATGTCAAAGTGGAAGACTGACAGAAGCAATGGACCTGTTTGAGGAAATGATCTCAAAGGATCAGATATTGCCTGATGTGCTAACGTACAACATTTTGATTAATGGTTTTTGCCGTGGTGGGAAAGTTAATAGGGCAAGGAAGATATTGGATTTTATGAAGAGCAAAGGATGCAACCCAAATGTATTCAATTACTCAGCTCTGATGAATGGATTCTGTAAGGAGAAAAGATTGGAGGAGGCCAAGGAGCTTTTGGATGAAATGAGGAGCTTTGGTATCAAACCAGATACAGTTGTCTACACTACTTTAATTGATTGCTACTGTAGGACTGGGAGAGTTCATGAAGCGATAGGGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGACTATGTAGAGAAGGCAGAATTGAGGATGCGCTTGAGATGTTGGACAAACTTCCTTATGAGGGTATCTATCTGAACAAGGGAAGCTACAGGATTGTGTTGAATTCCTTGTGTCAGAAAGGCAAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAACGAGTTGCTAGTTAGCCTTTGTGAGGCTGGAATGGCAGATGATGCAACTATGGCTTTATTTGGATTGGTGGAGTTGGGTTTCAAACCACTGCCTGATTCCTGGGCTCTTTTTGTTGAAACAATTTGCAGAGAAAGAAAGCTGCTGCCTGCATTTGAACTGCTCGATGAATTAGTTAATGAAGAGTTTGATTAA

Protein Analysis

539

Amino Acids

61.64

Weight (kDa)

8.78

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 224 - 273 1.5e-11 PPR repeat family
PPR_2 PF13041 259 - 309 2.1e-16 PPR repeat family
PPR_1 PF12854 259 - 287 4e-12 PPR repeat
PPR PF01535 262 - 290 1.4e-08 PPR repeat
PPR_long PF17177 276 - 428 1.8e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 284 - 342 2.7e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 293 - 324 1.5e-12 PPR repeat
PPR_2 PF13041 295 - 344 2.4e-17 PPR repeat family
PPR PF01535 299 - 328 6.9e-08 PPR repeat
PPR_1 PF12854 326 - 359 1.2e-12 PPR repeat
PPR_2 PF13041 330 - 375 8.9e-14 PPR repeat family
PPR PF01535 335 - 363 3.6e-08 PPR repeat
PPR_3 PF13812 354 - 410 1.1e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 362 - 394 1.1e-13 PPR repeat
PPR_2 PF13041 365 - 414 2.7e-18 PPR repeat family
PPR PF01535 368 - 398 3.8e-10 PPR repeat
PPR_1 PF12854 397 - 427 9.6e-10 PPR repeat
PPR_2 PF13041 401 - 449 5.2e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 96
AccI GTMKAC 1 cut(s) 1107
AclWI GGATC 7 cut(s) 12, 155, 185, 231, 284, 726, 879
AcsI RAATTY 2 cut(s) 170, 1333
AcuI CTGAAG 2 cut(s) 15, 143
AfaI GTAC 4 cut(s) 516, 580, 899, 1407
AfiI CCNNNNNNNGG 3 cut(s) 853, 1292, 1450
AjnI CCWGG 1 cut(s) 1526
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 7 cut(s) 12, 155, 185, 231, 284, 726, 879
AoxI GGCC 3 cut(s) 42, 621, 1050
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 260, 1567, 1570
ApoI RAATTY 2 cut(s) 170, 1333
AseI ATTAAT 1 cut(s) 912
Asp700I GAANNNNTTC 1 cut(s) 1022
AspLEI GCGC 1 cut(s) 1264
AspS9I GGNCC 4 cut(s) 42, 43, 622, 844
AvaII GGWCC 1 cut(s) 844
BaeGI GKGCMC 1 cut(s) 46
BaeI ACNNNNGTAYC 2 cut(s) 1089, 1122
BanI GGYRCC 1 cut(s) 96
BanII GRGCYC 2 cut(s) 46, 1534
BbsI GAAGAC 1 cut(s) 832
BbvI GCAGC 3 cut(s) 247, 1554, 1557
BccI CCATC 3 cut(s) 272, 568, 1384
BceAI ACGGC 2 cut(s) 84, 909
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 1 cut(s) 1528
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 2 cut(s) 228, 1436
BfmI CTRYAG 3 cut(s) 57, 1132, 1318
BfuAI ACCTGC 1 cut(s) 452
BisI GCNGC 3 cut(s) 261, 1568, 1571
BlsI GCNGC 3 cut(s) 262, 1569, 1572
BmcAI AGTACT 2 cut(s) 516, 580
Bme1390I CCNGG 1 cut(s) 1528
Bme18I GGWCC 1 cut(s) 844
BmgT120I GGNCC 4 cut(s) 42, 43, 622, 844
BmiI GGNNCC 2 cut(s) 44, 98
BmrFI CCNGG 1 cut(s) 1528
BmrI ACTGGG 1 cut(s) 1149
BmsI GCATC 5 cut(s) 247, 403, 971, 1249, 1459
BmuI ACTGGG 1 cut(s) 1149
BpiI GAAGAC 1 cut(s) 832
BpuEI CTTGAG 1 cut(s) 1286
BsaJI CCNNGG 4 cut(s) 303, 925, 1053, 1527
BsaXI ACNNNNNCTCC 2 cut(s) 1069, 1099
Bsc4I CCNNNNNNNGG 3 cut(s) 853, 1292, 1450
Bse1I ACTGG 2 cut(s) 542, 1144
Bse3DI GCAATG 2 cut(s) 703, 846
BseBI CCWGG 1 cut(s) 1528
BseDI CCNNGG 4 cut(s) 303, 925, 1053, 1527
BseGI GGATG 3 cut(s) 986, 1072, 1264
BseLI CCNNNNNNNGG 3 cut(s) 853, 1292, 1450
BseMI GCAATG 2 cut(s) 703, 846
BseMII CTCAG 2 cut(s) 401, 1020
BseNI ACTGG 2 cut(s) 542, 1144
BseRI GAGGAG 4 cut(s) 144, 247, 1061, 1090
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 3 cut(s) 247, 1554, 1557
BshFI GGCC 3 cut(s) 44, 623, 1052
BshNI GGYRCC 1 cut(s) 96
BslI CCNNNNNNNGG 3 cut(s) 853, 1292, 1450
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 3 cut(s) 44, 623, 1052
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 46, 1534
Bsp143I GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
BspANI GGCC 3 cut(s) 44, 623, 1052
BspCNI CTCAG 2 cut(s) 400, 1019
BspHI TCATGA 4 cut(s) 66, 454, 477, 1150
BspLI GGNNCC 2 cut(s) 44, 98
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 7 cut(s) 12, 155, 185, 231, 284, 726, 879
BspQI GCTCTTC 2 cut(s) 34, 965
BspT107I GGYRCC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 703, 846
BsrI ACTGG 2 cut(s) 542, 1144
BssECI CCNNGG 4 cut(s) 303, 925, 1053, 1527
BssMI GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
BssT1I CCWWGG 2 cut(s) 303, 1053
Bst2UI CCWGG 1 cut(s) 1528
Bst4CI ACNGT 6 cut(s) 61, 630, 1102, 1133, 1191, 1207
Bst6I CTCTTC 5 cut(s) 34, 162, 644, 965, 1602
BstAPI GCANNNNNTGC 2 cut(s) 981, 1469
BstC8I GCNNGC 3 cut(s) 300, 384, 1575
BstDEI CTNAG 5 cut(s) 47, 74, 387, 762, 1006
BstDSI CCRYGG 1 cut(s) 925
BstENI CCTNNNNNAGG 2 cut(s) 851, 1448
BstF5I GGATG 3 cut(s) 986, 1072, 1264
BstHHI GCGC 1 cut(s) 1264
BstKTI GATC 9 cut(s) 6, 20, 150, 193, 239, 292, 721, 864, 874
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
BstMWI GCNNNNNNNGC 7 cut(s) 362, 413, 889, 981, 1460, 1469, 1478
BstNI CCWGG 1 cut(s) 1528
BstNSI RCATGY 2 cut(s) 302, 678
BstSCI CCNGG 1 cut(s) 1526
BstSFI CTRYAG 3 cut(s) 57, 1132, 1318
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 247, 1554, 1557
BstV2I GAAGAC 1 cut(s) 832
BstX2I RGATCY 6 cut(s) 17, 147, 190, 236, 289, 718
BstYI RGATCY 6 cut(s) 17, 147, 190, 236, 289, 718
BsuRI GGCC 3 cut(s) 44, 623, 1052
BtgI CCRYGG 1 cut(s) 925
BtsCI GGATG 3 cut(s) 986, 1072, 1264
BtsI GCAGTG 1 cut(s) 1514
BtsIMutI CAGTG 1 cut(s) 1514
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 3 cut(s) 300, 384, 1575
CciI TCATGA 4 cut(s) 66, 454, 477, 1150
CfoI GCGC 1 cut(s) 1264
Cfr13I GGNCC 4 cut(s) 42, 43, 622, 844
Csp6I GTAC 4 cut(s) 515, 579, 898, 1406
CviQI GTAC 4 cut(s) 515, 579, 898, 1406
DdeI CTNAG 5 cut(s) 47, 74, 387, 762, 1006
DpnI GATC 9 cut(s) 5, 19, 149, 192, 238, 291, 720, 863, 873
DpnII GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 5 cut(s) 34, 162, 644, 965, 1602
EarI CTCTTC 5 cut(s) 34, 162, 644, 965, 1602
Eco130I CCWWGG 2 cut(s) 303, 1053
Eco24I GRGCYC 2 cut(s) 46, 1534
Eco47I GGWCC 1 cut(s) 844
Eco57I CTGAAG 2 cut(s) 15, 143
EcoNI CCTNNNNNAGG 2 cut(s) 851, 1448
EcoO109I RGGNCCY 2 cut(s) 42, 43
EcoRI GAATTC 1 cut(s) 1333
EcoRII CCWGG 1 cut(s) 1526
EcoT14I CCWWGG 2 cut(s) 303, 1053
EcoT22I ATGCAT 4 cut(s) 507, 575, 642, 680
EcoT38I GRGCYC 2 cut(s) 46, 1534
ErhI CCWWGG 2 cut(s) 303, 1053
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 3 cut(s) 261, 1568, 1571
FokI GGATG 3 cut(s) 993, 1079, 1271
FriOI GRGCYC 2 cut(s) 46, 1534
Fsp4HI GCNGC 3 cut(s) 261, 1568, 1571
FspBI CTAG 2 cut(s) 228, 1436
GlaI GCGC 1 cut(s) 1263
GluI GCNGC 3 cut(s) 261, 1568, 1571
HaeIII GGCC 3 cut(s) 44, 623, 1052
HhaI GCGC 1 cut(s) 1264
Hin6I GCGC 1 cut(s) 1262
HinP1I GCGC 1 cut(s) 1262
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 2 cut(s) 380, 764
HinfI GANTC 7 cut(s) 70, 607, 652, 725, 796, 1023, 1523
Hpy166II GTNNAC 2 cut(s) 685, 1108
Hpy188I TCNGA 7 cut(s) 34, 328, 390, 876, 1014, 1305, 1347
Hpy188III TCNNGA 8 cut(s) 67, 200, 254, 455, 478, 551, 722, 1151
Hpy8I GTNNAC 2 cut(s) 685, 1108
HpyAV CCTTC 3 cut(s) 129, 739, 1238
HpyCH4III ACNGT 6 cut(s) 61, 630, 1102, 1133, 1191, 1207
HpyCH4IV ACGT 1 cut(s) 896
HpyF10VI GCNNNNNNNGC 7 cut(s) 362, 413, 889, 981, 1460, 1469, 1478
HpyF3I CTNAG 5 cut(s) 47, 74, 387, 762, 1006
HpySE526I ACGT 1 cut(s) 896
HspAI GCGC 1 cut(s) 1262
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
LguI GCTCTTC 2 cut(s) 34, 965
LmnI GCTCC 3 cut(s) 328, 1057, 1077
Lsp1109I GCAGC 3 cut(s) 247, 1554, 1557
LweI GCATC 5 cut(s) 247, 403, 971, 1249, 1459
MaeI CTAG 2 cut(s) 228, 1436
MaeII ACGT 1 cut(s) 896
MaeIII GTNAC 1 cut(s) 1207
MalI GATC 9 cut(s) 5, 19, 149, 192, 238, 291, 720, 863, 873
MboI GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
MboII GAAGA 9 cut(s) 21, 149, 658, 661, 682, 837, 964, 982, 1619
MflI RGATCY 6 cut(s) 17, 147, 190, 236, 289, 718
MhlI GDGCHC 2 cut(s) 46, 1534
MlyI GAGTC 2 cut(s) 661, 790
MmeI TCCRAC 1 cut(s) 1254
Mph1103I ATGCAT 4 cut(s) 507, 575, 642, 680
MroXI GAANNNNTTC 1 cut(s) 1022
MslI CAYNNNNRTG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 1528
MvaI CCWGG 1 cut(s) 1528
MwoI GCNNNNNNNGC 7 cut(s) 362, 413, 889, 981, 1460, 1469, 1478
NdeII GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
NlaIV GGNNCC 2 cut(s) 44, 98
NmuCI GTSAC 1 cut(s) 1207
NsiI ATGCAT 4 cut(s) 507, 575, 642, 680
NspI RCATGY 2 cut(s) 302, 678
PaeI GCATGC 1 cut(s) 302
PagI TCATGA 4 cut(s) 66, 454, 477, 1150
PciSI GCTCTTC 2 cut(s) 34, 965
PdmI GAANNNNTTC 1 cut(s) 1022
PfeI GAWTC 5 cut(s) 70, 607, 725, 1023, 1523
PkrI GCNGC 3 cut(s) 262, 1569, 1572
PleI GAGTC 2 cut(s) 660, 790
PpsI GAGTC 2 cut(s) 660, 790
PshBI ATTAAT 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 1526
PspGI CCWGG 1 cut(s) 1526
PspN4I GGNNCC 2 cut(s) 44, 98
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 4 cut(s) 42, 43, 622, 844
PsuI RGATCY 6 cut(s) 17, 147, 190, 236, 289, 718
RsaI GTAC 4 cut(s) 516, 580, 899, 1407
RsaNI GTAC 4 cut(s) 515, 579, 898, 1406
RseI CAYNNNNRTG 1 cut(s) 351
SapI GCTCTTC 2 cut(s) 34, 965
SatI GCNGC 3 cut(s) 261, 1568, 1571
Sau3AI GATC 9 cut(s) 3, 17, 147, 190, 236, 289, 718, 861, 871
Sau96I GGNCC 4 cut(s) 42, 43, 622, 844
ScaI AGTACT 2 cut(s) 516, 580
SchI GAGTC 2 cut(s) 661, 790
ScrFI CCNGG 1 cut(s) 1528
SduI GDGCHC 2 cut(s) 46, 1534
SfaNI GCATC 5 cut(s) 247, 403, 971, 1249, 1459
SfcI CTRYAG 3 cut(s) 57, 1132, 1318
SinI GGWCC 1 cut(s) 844
SmiMI CAYNNNNRTG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 1265
SmoI CTYRAG 1 cut(s) 1265
SphI GCATGC 1 cut(s) 302
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 228, 1436
StyD4I CCNGG 1 cut(s) 1526
StyI CCWWGG 2 cut(s) 303, 1053
TaaI ACNGT 6 cut(s) 61, 630, 1102, 1133, 1191, 1207
TaiI ACGT 1 cut(s) 899
TaqI TCGA 3 cut(s) 122, 794, 1590
TatI WGTACW 2 cut(s) 514, 578
TfiI GAWTC 5 cut(s) 70, 607, 725, 1023, 1523
TscAI CASTG 1 cut(s) 1521
TseFI GTSAC 1 cut(s) 1207
TseI GCWGC 3 cut(s) 260, 1567, 1570
Tsp45I GTSAC 1 cut(s) 1207
TspRI CASTG 1 cut(s) 1521
VpaK11BI GGWCC 1 cut(s) 844
VspI ATTAAT 1 cut(s) 912
XagI CCTNNNNNAGG 2 cut(s) 851, 1448
XapI RAATTY 2 cut(s) 170, 1333
XceI RCATGY 2 cut(s) 302, 678
XcmI CCANNNNNNNNNTGG 2 cut(s) 710, 1060
XmiI GTMKAC 1 cut(s) 1107
XmnI GAANNNNTTC 1 cut(s) 1022
XspI CTAG 2 cut(s) 228, 1436
ZrmI AGTACT 2 cut(s) 516, 580
Zsp2I ATGCAT 4 cut(s) 507, 575, 642, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.