Rh4DG254900

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
47012871 .. 47016014
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG254900.1

Sequence Viewer

Length: 1551 bp
ATGAATCTAAGGAGAGTTCATTTTCGTTGGTGCCGTTGGTTCGCTTCCTCTCCTTCAACAATCTCATCGTCTGTTTCATGGGTCTCTCCTCTTCAGTTATCAAAATTCAATGCTCACAAACCAGATCCCCCTCCCGAAACCACAATTACAAGGACAGAAGCTAGGAGGAGATCCAAATATATATCTCACGATGCTGCCATCAACTTAATCAAACGTGAGAGAGATCCACAGCATGCCTTGGAAATATTTAACATGGTTTCAGAGCAAAAGGGTTTCAACCACAATAATGCCACCTATGCAACTATCCTCAGTAAGCTTGCTCAGAACAAGAAGTTCAAGGCTGTTGATGCAGTTCTCTATCAAATGAAGTATGATACCTGCAAATATCATGAGGGTATATTCCTTAATCTCATGAAGCATTTTTCAAAATCGTCTATGCATGAAAGAGTACTTGAAATGTTCTATGCTATCCAGCCAGTAGTTCGGGAAAAGCCATCTCTCAAATGCATTAGTACTTGTTTAAATCTACTGATTGAAGCGAATCAGGTTGATTTGGCCCAACAGTTTCTCATGCATTTGAAGAGTCTTAACTTGAAGCTGAATACATGCATTGTCAACATCTTGGTTAAGCACCATTGCACAAATGGGGATCTTGAATCTGCCTTCGAGGTTGTGAAGGAAATGAAAAAGTCTAAGCTTTCCTATCCTAATTTGATTACTTACTCGACTCTAATTGATGGTTTATGTCAAAGTGGAAGACTGACAGAAGCAATGGACCTGTTTGAGGAAATGATCTCAAAGGATCAGATATTGCCTGATGTGCTAACGTACAACATTTTGATTAATGGTTTTTGCCGTGGTGGGAAAGTTAATAGGGCAAGGAAGATATTGGATTTTATGAAGAGCAAAGGATGCAACCCAAATGTATTCAATTACTCAGCTCTGATGAATGGATTCTGTAAGGAGGAAAGATTTGAGGAGACCAAGGAGCTTTTGGATGAAATGAAGAGCTTTGGTATCAAACCAGATACAGTTGTCTACACTACTTTAATTGATTGCTACTGTAGGACTGGGAGAGTTGATGAAGCGATAGAGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGACTATGTAGAGAAGGCAGAATTGAGGATGCGCTTGAGATGCTGGACAAACTTCCTTATGAGGGTATCTATCTGAATAAGGGAAGCTACAGGATTGTGTTGAATTCCTTGTGTCAGACAGGCGAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAACGAGTTGCTAGTTAGCCTCTGTGAGGCTGGATTGGCAGATGATGCAACTATAGCTTTATTTGGATTGGTGGAGTTGGGTTTCAAACCACTGCCTGATTCCTGGGCTCTTTTTGTTGAATCAATTTGCAGAGAAAGAAAGCTGCTGCCTGCATTTGAACTGCTCGATGATTTAGTTAATGAAGAGTTTGATTAA

Protein Analysis

516

Amino Acids

59.09

Weight (kDa)

8.02

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 191 - 268 4.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 193 - 246 7.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 197 - 229 1e-05 PPR repeat
PPR_2 PF13041 201 - 250 3.1e-13 PPR repeat family
PPR_2 PF13041 236 - 286 2.3e-17 PPR repeat family
PPR_1 PF12854 236 - 264 3.7e-13 PPR repeat
PPR PF01535 239 - 267 2.1e-09 PPR repeat
PPR_long PF17177 253 - 405 1.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 261 - 319 2.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 270 - 301 1.4e-12 PPR repeat
PPR_2 PF13041 272 - 321 2.2e-17 PPR repeat family
PPR PF01535 276 - 305 6.5e-08 PPR repeat
PPR_1 PF12854 303 - 336 2.5e-10 PPR repeat
PPR_2 PF13041 307 - 351 2.9e-12 PPR repeat family
PPR PF01535 312 - 340 2e-06 PPR repeat
PPR_3 PF13812 331 - 387 7.6e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 339 - 371 2.6e-15 PPR repeat
TPR_24 PF23276 341 - 408 7.4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 342 - 391 2.6e-19 PPR repeat family
PPR PF01535 345 - 375 2.9e-11 PPR repeat
PPR_1 PF12854 374 - 404 9.1e-10 PPR repeat
PPR_2 PF13041 378 - 426 4.9e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 386
AccB1I GGYRCC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 1038
AclWI GGATC 5 cut(s) 119, 165, 218, 657, 810
AcsI RAATTY 2 cut(s) 104, 1264
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 4 cut(s) 450, 514, 830, 1338
AfiI CCNNNNNNNGG 3 cut(s) 784, 1223, 1381
AjnI CCWGG 1 cut(s) 1457
Alw26I GTCTC 2 cut(s) 88, 974
AlwI GGATC 5 cut(s) 119, 165, 218, 657, 810
AoxI GGCC 1 cut(s) 555
ApeKI GCWGC 3 cut(s) 194, 1498, 1501
ApoI RAATTY 2 cut(s) 104, 1264
AseI ATTAAT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 1195
AspS9I GGNCC 2 cut(s) 556, 775
AvaII GGWCC 1 cut(s) 775
BaeI ACNNNNGTAYC 2 cut(s) 1020, 1053
BanI GGYRCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 1465
BbsI GAAGAC 1 cut(s) 763
BbvI GCAGC 3 cut(s) 181, 1485, 1488
BccI CCATC 4 cut(s) 206, 502, 731, 1315
BceAI ACGGC 2 cut(s) 18, 840
BcgI CGANNNNNNTGC 2 cut(s) 1078, 1112
BciT130I CCWGG 1 cut(s) 1459
BcoDI GTCTC 2 cut(s) 88, 974
BfaI CTAG 2 cut(s) 162, 1367
BfmI CTRYAG 3 cut(s) 1063, 1249, 1407
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 3 cut(s) 195, 1499, 1502
BlsI GCNGC 3 cut(s) 196, 1500, 1503
BmcAI AGTACT 2 cut(s) 450, 514
Bme1390I CCNGG 1 cut(s) 1459
Bme18I GGWCC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 556, 775
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 1459
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 6 cut(s) 181, 337, 902, 1180, 1191, 1390
BmuI ACTGGG 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 763
BpuEI CTTGAG 1 cut(s) 1217
BsaI GGTCTC 2 cut(s) 88, 974
BsaJI CCNNGG 4 cut(s) 237, 856, 984, 1458
Bsc4I CCNNNNNNNGG 3 cut(s) 784, 1223, 1381
Bse1I ACTGG 2 cut(s) 476, 1075
Bse3DI GCAATG 2 cut(s) 634, 777
BseBI CCWGG 1 cut(s) 1459
BseDI CCNNGG 4 cut(s) 237, 856, 984, 1458
BseGI GGATG 3 cut(s) 917, 1003, 1195
BseLI CCNNNNNNNGG 3 cut(s) 784, 1223, 1381
BseMI GCAATG 2 cut(s) 634, 777
BseMII CTCAG 3 cut(s) 322, 335, 951
BseNI ACTGG 2 cut(s) 476, 1075
BseRI GAGGAG 3 cut(s) 78, 181, 992
BseXI GCAGC 3 cut(s) 181, 1485, 1488
BshFI GGCC 1 cut(s) 557
BshNI GGYRCC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 784, 1223, 1381
BsmAI GTCTC 2 cut(s) 88, 974
BsnI GGCC 1 cut(s) 557
Bso31I GGTCTC 2 cut(s) 88, 974
Bsp1286I GDGCHC 1 cut(s) 1465
Bsp143I GATC 6 cut(s) 124, 170, 223, 649, 792, 802
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 3 cut(s) 321, 334, 950
BspHI TCATGA 2 cut(s) 388, 411
BspLI GGNNCC 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 5 cut(s) 119, 165, 218, 657, 810
BspQI GCTCTTC 2 cut(s) 896, 1001
BspT107I GGYRCC 1 cut(s) 30
BspTNI GGTCTC 2 cut(s) 88, 974
BsrDI GCAATG 2 cut(s) 634, 777
BsrI ACTGG 2 cut(s) 476, 1075
BssECI CCNNGG 4 cut(s) 237, 856, 984, 1458
BssMI GATC 6 cut(s) 124, 170, 223, 649, 792, 802
BssT1I CCWWGG 2 cut(s) 237, 984
Bst2UI CCWGG 1 cut(s) 1459
Bst4CI ACNGT 5 cut(s) 564, 1033, 1064, 1122, 1138
Bst6I CTCTTC 5 cut(s) 96, 575, 896, 1001, 1533
BstAPI GCANNNNNTGC 2 cut(s) 912, 1400
BstC8I GCNNGC 3 cut(s) 234, 318, 1506
BstDEI CTNAG 5 cut(s) 8, 308, 321, 693, 937
BstDSI CCRYGG 1 cut(s) 856
BstENI CCTNNNNNAGG 2 cut(s) 782, 1379
BstF5I GGATG 3 cut(s) 917, 1003, 1195
BstHHI GCGC 1 cut(s) 1195
BstKTI GATC 6 cut(s) 127, 173, 226, 652, 795, 805
BstMAI GTCTC 2 cut(s) 88, 974
BstMBI GATC 6 cut(s) 124, 170, 223, 649, 792, 802
BstMWI GCNNNNNNNGC 8 cut(s) 296, 347, 820, 912, 1201, 1391, 1400, 1409
BstNI CCWGG 1 cut(s) 1459
BstNSI RCATGY 2 cut(s) 236, 609
BstSCI CCNGG 1 cut(s) 1457
BstSFI CTRYAG 3 cut(s) 1063, 1249, 1407
BstV1I GCAGC 3 cut(s) 181, 1485, 1488
BstV2I GAAGAC 1 cut(s) 763
BstX2I RGATCY 4 cut(s) 124, 170, 223, 649
BstYI RGATCY 4 cut(s) 124, 170, 223, 649
BsuRI GGCC 1 cut(s) 557
BtgI CCRYGG 1 cut(s) 856
BtsCI GGATG 3 cut(s) 917, 1003, 1195
BtsI GCAGTG 1 cut(s) 1445
BtsIMutI CAGTG 1 cut(s) 1445
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 3 cut(s) 234, 318, 1506
CciI TCATGA 2 cut(s) 388, 411
CfoI GCGC 1 cut(s) 1195
Cfr13I GGNCC 2 cut(s) 556, 775
Csp6I GTAC 4 cut(s) 449, 513, 829, 1337
CviAII CATG 8 cut(s) 78, 233, 253, 389, 412, 440, 571, 606
CviQI GTAC 4 cut(s) 449, 513, 829, 1337
DdeI CTNAG 5 cut(s) 8, 308, 321, 693, 937
DpnI GATC 6 cut(s) 126, 172, 225, 651, 794, 804
DpnII GATC 6 cut(s) 124, 170, 223, 649, 792, 802
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 5 cut(s) 96, 575, 896, 1001, 1533
EarI CTCTTC 5 cut(s) 96, 575, 896, 1001, 1533
Eco130I CCWWGG 2 cut(s) 237, 984
Eco24I GRGCYC 1 cut(s) 1465
Eco31I GGTCTC 2 cut(s) 88, 974
Eco47I GGWCC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 77
EcoNI CCTNNNNNAGG 2 cut(s) 782, 1379
EcoRI GAATTC 1 cut(s) 1264
EcoRII CCWGG 1 cut(s) 1457
EcoT14I CCWWGG 2 cut(s) 237, 984
EcoT22I ATGCAT 4 cut(s) 441, 509, 576, 611
EcoT38I GRGCYC 1 cut(s) 1465
ErhI CCWWGG 2 cut(s) 237, 984
FaeI CATG 8 cut(s) 81, 236, 256, 392, 415, 443, 574, 609
FatI CATG 8 cut(s) 77, 232, 252, 388, 411, 439, 570, 605
FblI GTMKAC 1 cut(s) 1038
Fnu4HI GCNGC 3 cut(s) 195, 1499, 1502
FokI GGATG 3 cut(s) 924, 1010, 1202
FriOI GRGCYC 1 cut(s) 1465
Fsp4HI GCNGC 3 cut(s) 195, 1499, 1502
FspBI CTAG 2 cut(s) 162, 1367
GlaI GCGC 1 cut(s) 1194
GluI GCNGC 3 cut(s) 195, 1499, 1502
HaeIII GGCC 1 cut(s) 557
HhaI GCGC 1 cut(s) 1195
Hin1II CATG 8 cut(s) 81, 236, 256, 392, 415, 443, 574, 609
Hin6I GCGC 1 cut(s) 1193
HinP1I GCGC 1 cut(s) 1193
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HindIII AAGCTT 2 cut(s) 314, 695
HinfI GANTC 8 cut(s) 4, 541, 583, 656, 727, 954, 1454, 1475
Hpy166II GTNNAC 2 cut(s) 616, 1039
Hpy188I TCNGA 6 cut(s) 262, 324, 807, 945, 1236, 1278
Hpy188III TCNNGA 6 cut(s) 134, 188, 389, 412, 485, 653
Hpy8I GTNNAC 2 cut(s) 616, 1039
HpyAV CCTTC 4 cut(s) 63, 670, 673, 1169
HpyCH4III ACNGT 5 cut(s) 564, 1033, 1064, 1122, 1138
HpyCH4IV ACGT 2 cut(s) 214, 827
HpyF10VI GCNNNNNNNGC 8 cut(s) 296, 347, 820, 912, 1201, 1391, 1400, 1409
HpyF3I CTNAG 5 cut(s) 8, 308, 321, 693, 937
HpySE526I ACGT 2 cut(s) 214, 827
Hsp92II CATG 8 cut(s) 81, 236, 256, 392, 415, 443, 574, 609
HspAI GCGC 1 cut(s) 1193
Kzo9I GATC 6 cut(s) 124, 170, 223, 649, 792, 802
LguI GCTCTTC 2 cut(s) 896, 1001
LmnI GCTCC 1 cut(s) 988
Lsp1109I GCAGC 3 cut(s) 181, 1485, 1488
LweI GCATC 6 cut(s) 181, 337, 902, 1180, 1191, 1390
MaeI CTAG 2 cut(s) 162, 1367
MaeII ACGT 2 cut(s) 214, 827
MaeIII GTNAC 1 cut(s) 1138
MalI GATC 6 cut(s) 126, 172, 225, 651, 794, 804
MboI GATC 6 cut(s) 124, 170, 223, 649, 792, 802
MboII GAAGA 7 cut(s) 83, 592, 768, 895, 913, 1018, 1550
MflI RGATCY 4 cut(s) 124, 170, 223, 649
MhlI GDGCHC 1 cut(s) 1465
MluCI AATT 9 cut(s) 104, 144, 709, 732, 931, 1050, 1182, 1264, 1479
MlyI GAGTC 2 cut(s) 592, 721
Mph1103I ATGCAT 4 cut(s) 441, 509, 576, 611
MroXI GAANNNNTTC 1 cut(s) 953
MslI CAYNNNNRTG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 1459
MvaI CCWGG 1 cut(s) 1459
MwoI GCNNNNNNNGC 8 cut(s) 296, 347, 820, 912, 1201, 1391, 1400, 1409
NdeII GATC 6 cut(s) 124, 170, 223, 649, 792, 802
NlaIII CATG 8 cut(s) 81, 236, 256, 392, 415, 443, 574, 609
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 1138
NsiI ATGCAT 4 cut(s) 441, 509, 576, 611
NspI RCATGY 2 cut(s) 236, 609
PaeI GCATGC 1 cut(s) 236
PagI TCATGA 2 cut(s) 388, 411
PciSI GCTCTTC 2 cut(s) 896, 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 6 cut(s) 4, 541, 656, 954, 1454, 1475
PkrI GCNGC 3 cut(s) 196, 1500, 1503
PleI GAGTC 2 cut(s) 591, 721
PpsI GAGTC 2 cut(s) 591, 721
PshBI ATTAAT 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 1457
PspGI CCWGG 1 cut(s) 1457
PspN4I GGNNCC 1 cut(s) 32
PspPI GGNCC 2 cut(s) 556, 775
PsuI RGATCY 4 cut(s) 124, 170, 223, 649
RsaI GTAC 4 cut(s) 450, 514, 830, 1338
RsaNI GTAC 4 cut(s) 449, 513, 829, 1337
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 2 cut(s) 896, 1001
SatI GCNGC 3 cut(s) 195, 1499, 1502
Sau3AI GATC 6 cut(s) 124, 170, 223, 649, 792, 802
Sau96I GGNCC 2 cut(s) 556, 775
ScaI AGTACT 2 cut(s) 450, 514
SchI GAGTC 2 cut(s) 592, 721
ScrFI CCNGG 1 cut(s) 1459
SduI GDGCHC 1 cut(s) 1465
SfaNI GCATC 6 cut(s) 181, 337, 902, 1180, 1191, 1390
SfcI CTRYAG 3 cut(s) 1063, 1249, 1407
SinI GGWCC 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
SphI GCATGC 1 cut(s) 236
Sse9I AATT 9 cut(s) 104, 144, 709, 732, 931, 1050, 1182, 1264, 1479
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 162, 1367
StyD4I CCNGG 1 cut(s) 1457
StyI CCWWGG 2 cut(s) 237, 984
TaaI ACNGT 5 cut(s) 564, 1033, 1064, 1122, 1138
TaiI ACGT 2 cut(s) 217, 830
TaqI TCGA 3 cut(s) 666, 725, 1521
TasI AATT 9 cut(s) 104, 144, 709, 732, 931, 1050, 1182, 1264, 1479
TatI WGTACW 2 cut(s) 448, 512
TfiI GAWTC 6 cut(s) 4, 541, 656, 954, 1454, 1475
TscAI CASTG 1 cut(s) 1452
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 3 cut(s) 194, 1498, 1501
Tsp45I GTSAC 1 cut(s) 1138
TspRI CASTG 1 cut(s) 1452
VpaK11BI GGWCC 1 cut(s) 775
VspI ATTAAT 1 cut(s) 843
XagI CCTNNNNNAGG 2 cut(s) 782, 1379
XapI RAATTY 2 cut(s) 104, 1264
XceI RCATGY 2 cut(s) 236, 609
XcmI CCANNNNNNNNNTGG 2 cut(s) 641, 991
XmiI GTMKAC 1 cut(s) 1038
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 2 cut(s) 162, 1367
ZrmI AGTACT 2 cut(s) 450, 514
Zsp2I ATGCAT 4 cut(s) 441, 509, 576, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.