Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

187992 .. 189245

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000045.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgcatgaaagagtacttgaaatgttctatgctatccagccagtagttcgggaaaagccatctctcaaatgcattagtacttgtttaaatctactgattgaagcgaatcaggttgatttggcccaacagtttctcatgcatttgaagaagagtcttaacttgaagctgaatacatgcattgtcaacatcttggttaagcaccattgcacaaatggggatcttgaatctgccttcgaggttgtgaaggaaatgaaaaagtctaagctttcctatcctaatttgattacttactcgactctaattgatggtttatgtcaaagtggaagactgacagaagcaatggacctgtttgaggaaatgatctcaaaggatcagatattgcctgatgtgctaacgtacaacatgttgattaatcgtttttgccgtggttggaaagttaatagggcaaagatgatattggattttttgaagagcaaaggatgcaacccaaatgtattcaattactcagctctgatgaatggattctgtaaggaggaacgtaatgacataaaaactctcatagctgagattgatcttcccgtgagtgcttgggatgagaagtggattgatgtgtacttggacatcagtgtaaagttgctcgatatatgcattgtcttcagctctgagatcgcacacttaaaccaggggcatttgtttcttcagtttgtgttgcataatttgaattcagcctcttcgaagcaatttattcgtgcccgttcttcaattgatgactggaagaatcatattgcttcaaagaaccccagggttgagaactgtagcaccattttggacaagcttgtggaatcactggatctaccaaaggttaagaactcagcaaaagggaaacttttaatgtgtgctatgtatggagtgaaggtgttgacagtatctgtttgtagtgtctttatcgcagccttttctggttctgcaagcaagttgttagatttgaatgttgccgagacatatatgtgggcacaagcatttaatgacttacagagtaatgtaaatggggaaattagaaatgtactttctagtggtagagttacggtactgaaagagctggaagcagttgatggtattgtgaagcacttgtatcctatgatccaagatgacgtggcccttgcaaaagaagaagcattcaagaattctacttcagatttagaaaggaatgcacagaatctgatgggaaatgtagaagggcaggttgtgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016020 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

417

Amino Acids

47.08

Weight (kDa)

6.76

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1231
AclWI	GGATC	4 cut(s)	225, 378, 858, 1135
AcsI	RAATTY	2 cut(s)	721, 1183
AcuI	CTGAAG	3 cut(s)	640, 683, 1176
AfaI	GTAC	6 cut(s)	15, 79, 398, 614, 1065, 1089
AfiI	CCNNNNNNNGG	1 cut(s)	352
AflIII	ACRYGT	1 cut(s)	402
AjiI	CACGTC	1 cut(s)	1153
AjnI	CCWGG	2 cut(s)	681, 800
AluBI	AGCT	7 cut(s)	166, 265, 509, 563, 660, 835, 1099
AluI	AGCT	7 cut(s)	166, 265, 509, 563, 660, 835, 1099
Alw26I	GTCTC	1 cut(s)	992
AlwI	GGATC	4 cut(s)	225, 378, 858, 1135
AlwNI	CAGNNNCTG	2 cut(s)	929, 1219
AoxI	GGCC	2 cut(s)	120, 1155
ApeKI	GCWGC	1 cut(s)	950
ApoI	RAATTY	2 cut(s)	721, 1183
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	521
AspS9I	GGNCC	3 cut(s)	121, 343, 1156
AsuII	TTCGAA	1 cut(s)	734
AvaII	GGWCC	1 cut(s)	343
BaeGI	GKGCMC	2 cut(s)	754, 1015
BbsI	GAAGAC	2 cut(s)	331, 646
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	4 cut(s)	67, 299, 1106, 1216
BceAI	ACGGC	1 cut(s)	408
BcgI	CGANNNNNNTGC	2 cut(s)	728, 762
BciT130I	CCWGG	2 cut(s)	683, 802
BciVI	GTATCC	1 cut(s)	1143
BcoDI	GTCTC	1 cut(s)	992
BfaI	CTAG	1 cut(s)	1071
BfmI	CTRYAG	1 cut(s)	814
BfuAI	ACCTGC	1 cut(s)	1231
BfuI	GTATCC	1 cut(s)	1143
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
BmcAI	AGTACT	2 cut(s)	15, 79
Bme1390I	CCNGG	2 cut(s)	683, 802
Bme18I	GGWCC	1 cut(s)	343
BmgBI	CACGTC	1 cut(s)	1153
BmgT120I	GGNCC	3 cut(s)	121, 343, 1156
BmrFI	CCNGG	2 cut(s)	683, 802
BmsI	GCATC	1 cut(s)	470
BpiI	GAAGAC	2 cut(s)	331, 646
Bpu14I	TTCGAA	1 cut(s)	734
BsaJI	CCNNGG	4 cut(s)	424, 682, 800, 801
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	41, 776, 852
Bse3DI	GCAATG	2 cut(s)	202, 345
BseBI	CCWGG	2 cut(s)	683, 802
BseDI	CCNNGG	4 cut(s)	424, 682, 800, 801
BseGI	GGATG	2 cut(s)	485, 598
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	202, 345
BseMII	CTCAG	4 cut(s)	519, 555, 654, 885
BseNI	ACTGG	3 cut(s)	41, 776, 852
BseSI	GKGCMC	2 cut(s)	754, 1015
BseXI	GCAGC	1 cut(s)	962
BshFI	GGCC	2 cut(s)	122, 1157
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	992
BsmI	GAATGC	2 cut(s)	1175, 1213
BsnI	GGCC	2 cut(s)	122, 1157
Bsp119I	TTCGAA	1 cut(s)	734
Bsp1286I	GDGCHC	2 cut(s)	754, 1015
Bsp143I	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
BspANI	GGCC	2 cut(s)	122, 1157
BspCNI	CTCAG	4 cut(s)	518, 556, 655, 884
BspMI	ACCTGC	1 cut(s)	1231
BspPI	GGATC	4 cut(s)	225, 378, 858, 1135
BspQI	GCTCTTC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	202, 345
BsrI	ACTGG	3 cut(s)	41, 776, 852
BssECI	CCNNGG	4 cut(s)	424, 682, 800, 801
BssMI	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
Bst2UI	CCWGG	2 cut(s)	683, 802
Bst4CI	ACNGT	4 cut(s)	129, 815, 925, 1087
Bst6I	CTCTTC	3 cut(s)	143, 464, 736
BstAPI	GCANNNNNTGC	1 cut(s)	480
BstBI	TTCGAA	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	970
BstDEI	CTNAG	5 cut(s)	261, 505, 564, 663, 871
BstDSI	CCRYGG	1 cut(s)	424
BstENI	CCTNNNNNAGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	485, 598
BstKTI	GATC	7 cut(s)	220, 363, 373, 574, 669, 853, 1143
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 480
BstNI	CCWGG	2 cut(s)	683, 802
BstNSI	RCATGY	2 cut(s)	177, 406
BstSCI	CCNGG	2 cut(s)	681, 800
BstSFI	CTRYAG	1 cut(s)	814
BstSLI	GKGCMC	2 cut(s)	754, 1015
BstV1I	GCAGC	1 cut(s)	962
BstV2I	GAAGAC	2 cut(s)	331, 646
BstX2I	RGATCY	2 cut(s)	217, 850
BstYI	RGATCY	2 cut(s)	217, 850
BsuI	GTATCC	1 cut(s)	1143
BsuRI	GGCC	2 cut(s)	122, 1157
BtgI	CCRYGG	1 cut(s)	424
BtrI	CACGTC	1 cut(s)	1153
BtsCI	GGATG	2 cut(s)	485, 598
BtsIMutI	CAGTG	2 cut(s)	631, 845
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	1 cut(s)	970
CaiI	CAGNNNCTG	2 cut(s)	929, 1219
Cfr13I	GGNCC	3 cut(s)	121, 343, 1156
Csp6I	GTAC	6 cut(s)	14, 78, 397, 613, 1064, 1088
CviAII	CATG	4 cut(s)	5, 136, 174, 403
CviQI	GTAC	6 cut(s)	14, 78, 397, 613, 1064, 1088
DdeI	CTNAG	5 cut(s)	261, 505, 564, 663, 871
DpnI	GATC	7 cut(s)	219, 362, 372, 573, 668, 852, 1142
DpnII	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
DraI	TTTAAA	1 cut(s)	87
Eam1104I	CTCTTC	3 cut(s)	143, 464, 736
EarI	CTCTTC	3 cut(s)	143, 464, 736
Eco47I	GGWCC	1 cut(s)	343
Eco57I	CTGAAG	3 cut(s)	640, 683, 1176
EcoNI	CCTNNNNNAGG	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	721, 1183
EcoRII	CCWGG	2 cut(s)	681, 800
EcoT22I	ATGCAT	5 cut(s)	6, 74, 141, 179, 650
FaeI	CATG	4 cut(s)	8, 139, 177, 406
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FatI	CATG	4 cut(s)	4, 135, 173, 402
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	2 cut(s)	492, 605
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	1 cut(s)	1071
GluI	GCNGC	1 cut(s)	951
HaeIII	GGCC	2 cut(s)	122, 1157
Hin1II	CATG	4 cut(s)	8, 139, 177, 406
HincII	GTYRAC	2 cut(s)	184, 921
HindII	GTYRAC	2 cut(s)	184, 921
HindIII	AAGCTT	2 cut(s)	263, 833
HinfI	GANTC	8 cut(s)	106, 151, 224, 295, 522, 778, 842, 1216
Hpy166II	GTNNAC	3 cut(s)	184, 613, 921
Hpy188I	TCNGA	5 cut(s)	375, 513, 664, 1195, 1221
Hpy188III	TCNNGA	3 cut(s)	50, 221, 1180
Hpy8I	GTNNAC	3 cut(s)	184, 613, 921
HpyAV	CCTTC	4 cut(s)	238, 241, 907, 1229
HpyCH4III	ACNGT	4 cut(s)	129, 815, 925, 1087
HpyCH4IV	ACGT	3 cut(s)	395, 538, 1152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 480
HpyF3I	CTNAG	5 cut(s)	261, 505, 564, 663, 871
HpySE526I	ACGT	3 cut(s)	395, 538, 1152
Hsp92II	CATG	4 cut(s)	8, 139, 177, 406
Kzo9I	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
LguI	GCTCTTC	1 cut(s)	464
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	1 cut(s)	1071
MaeII	ACGT	3 cut(s)	395, 538, 1152
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	7 cut(s)	219, 362, 372, 573, 668, 852, 1142
MboI	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	2 cut(s)	217, 850
MhlI	GDGCHC	2 cut(s)	754, 1015
MluCI	AATT	9 cut(s)	277, 300, 499, 715, 721, 740, 762, 1053, 1183
MlyI	GAGTC	2 cut(s)	160, 289
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	5 cut(s)	229, 346, 526, 739, 1242
Mph1103I	ATGCAT	5 cut(s)	6, 74, 141, 179, 650
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	9 cut(s)	86, 156, 195, 411, 438, 677, 864, 890, 1023
MslI	CAYNNNNRTG	1 cut(s)	1006
MspR9I	CCNGG	2 cut(s)	683, 802
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	1175, 1213
MvaI	CCWGG	2 cut(s)	683, 802
MwoI	GCNNNNNNNGC	2 cut(s)	388, 480
NdeII	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
NlaIII	CATG	4 cut(s)	8, 139, 177, 406
NmeAIII	GCCGAG	1 cut(s)	1021
NsiI	ATGCAT	5 cut(s)	6, 74, 141, 179, 650
NspI	RCATGY	2 cut(s)	177, 406
NspV	TTCGAA	1 cut(s)	734
PasI	CCCWGGG	1 cut(s)	801
PciI	ACATGT	1 cut(s)	402
PciSI	GCTCTTC	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	421
PctI	GAATGC	2 cut(s)	1175, 1213
PdmI	GAANNNNTTC	1 cut(s)	521
PfeI	GAWTC	6 cut(s)	106, 224, 522, 778, 842, 1216
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	159, 289
PpsI	GAGTC	2 cut(s)	159, 289
PscI	ACATGT	1 cut(s)	402
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	681, 800
PspGI	CCWGG	2 cut(s)	681, 800
PspPI	GGNCC	3 cut(s)	121, 343, 1156
PstNI	CAGNNNCTG	2 cut(s)	929, 1219
PsuI	RGATCY	2 cut(s)	217, 850
RsaI	GTAC	6 cut(s)	15, 79, 398, 614, 1065, 1089
RsaNI	GTAC	6 cut(s)	14, 78, 397, 613, 1064, 1088
RseI	CAYNNNNRTG	1 cut(s)	1006
SapI	GCTCTTC	1 cut(s)	464
SaqAI	TTAA	9 cut(s)	86, 156, 195, 411, 438, 677, 864, 890, 1023
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	7 cut(s)	217, 360, 370, 571, 666, 850, 1140
Sau96I	GGNCC	3 cut(s)	121, 343, 1156
ScaI	AGTACT	2 cut(s)	15, 79
SchI	GAGTC	2 cut(s)	160, 289
ScrFI	CCNGG	2 cut(s)	683, 802
SduI	GDGCHC	2 cut(s)	754, 1015
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	814
SfuI	TTCGAA	1 cut(s)	734
SinI	GGWCC	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	1006
Sse9I	AATT	9 cut(s)	277, 300, 499, 715, 721, 740, 762, 1053, 1183
SspMI	CTAG	1 cut(s)	1071
StyD4I	CCNGG	2 cut(s)	681, 800
TaaI	ACNGT	4 cut(s)	129, 815, 925, 1087
TaiI	ACGT	3 cut(s)	398, 541, 1155
TaqI	TCGA	4 cut(s)	234, 293, 639, 734
TasI	AATT	9 cut(s)	277, 300, 499, 715, 721, 740, 762, 1053, 1183
TatI	WGTACW	4 cut(s)	13, 77, 612, 1063
TfiI	GAWTC	6 cut(s)	106, 224, 522, 778, 842, 1216
Tru1I	TTAA	9 cut(s)	86, 156, 195, 411, 438, 677, 864, 890, 1023
Tru9I	TTAA	9 cut(s)	86, 156, 195, 411, 438, 677, 864, 890, 1023
TscAI	CASTG	2 cut(s)	631, 852
TseI	GCWGC	1 cut(s)	950
TspDTI	ATGAA	3 cut(s)	21, 266, 530
TspRI	CASTG	2 cut(s)	631, 852
VpaK11BI	GGWCC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	721, 1183
XceI	RCATGY	2 cut(s)	177, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	1 cut(s)	1071
ZrmI	AGTACT	2 cut(s)	15, 79
Zsp2I	ATGCAT	5 cut(s)	6, 74, 141, 179, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.