Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

7396463 .. 7398158

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAGGGTGAAGCTCGGCGAGTTGGGTTCGGTGACCGGCAGTGGTGTTGCCGGGGGAGACCCGAACTCGACGCCGGGTCCACGGTGGCTATTTGGAGTTGGAGGCCATCGTTCGGGGTGGTGCCGGGCCCTTAAAGCAGCTGCAGTTTTCATGAATCTAAGGAGAGTTCATTTTAGTTGGTGCCGTTGGTTCGCTTCCTGTCCTTCGACAATCTCATCATCTGTTTCATGGATCTCTCCTCTTCAGTTATCAAAATTCAATGCTCACAAACCAGATCCCCCTCCCGAAACCACAACCACAAGGACAGAAGCTAGGAGGAAATCCAAATATATTTCTCATGATGCTGCCATCAACTTAATTAAACGTGAGAGAGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

126

Amino Acids

13.89

Weight (kDa)

10.65

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	120, 180
AclWI	GGATC	3 cut(s)	239, 269, 368
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	259
AhdI	GACNNNNNGTC	1 cut(s)	75
AluBI	AGCT	3 cut(s)	13, 140, 311
AluI	AGCT	3 cut(s)	13, 140, 311
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	3 cut(s)	239, 269, 368
AoxI	GGCC	2 cut(s)	103, 126
ApaI	GGGCCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	137, 140, 344
ApoI	RAATTY	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	77, 126, 127
AsuC2I	CCSGG	3 cut(s)	52, 75, 125
AsuHPI	GGTGA	2 cut(s)	19, 43
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	120, 180
BanII	GRGCYC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	127, 149, 331
BccI	CCATC	2 cut(s)	114, 356
BceAI	ACGGC	1 cut(s)	168
BcnI	CCSGG	3 cut(s)	52, 75, 125
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	3 cut(s)	138, 141, 345
BlsI	GCNGC	3 cut(s)	139, 142, 346
Bme1390I	CCNGG	3 cut(s)	52, 75, 125
Bme18I	GGWCC	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	75
BmgT120I	GGNCC	3 cut(s)	77, 126, 127
BmiI	GGNNCC	4 cut(s)	78, 122, 128, 182
BmrFI	CCNGG	3 cut(s)	52, 75, 125
BmsI	GCATC	1 cut(s)	331
BpuMI	CCSGG	3 cut(s)	52, 75, 125
BsaHI	GRCGYC	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	51, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	35
BseDI	CCNNGG	2 cut(s)	51, 80
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	228
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	127, 149, 331
BshFI	GGCC	2 cut(s)	105, 128
BshNI	GGYRCC	2 cut(s)	120, 180
BsiSI	CCGG	4 cut(s)	36, 51, 74, 124
BslI	CCNNNNNNNGG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	2 cut(s)	105, 128
Bso31I	GGTCTC	1 cut(s)	51
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	3 cut(s)	231, 274, 373
BspANI	GGCC	2 cut(s)	105, 128
BspHI	TCATGA	2 cut(s)	150, 337
BspLI	GGNNCC	4 cut(s)	78, 122, 128, 182
BspMAI	CTGCAG	1 cut(s)	145
BspPI	GGATC	3 cut(s)	239, 269, 368
BspT107I	GGYRCC	2 cut(s)	120, 180
BspTNI	GGTCTC	1 cut(s)	51
BsrFI	RCCGGY	1 cut(s)	35
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	51, 80
BssMI	GATC	3 cut(s)	231, 274, 373
BssNI	GRCGYC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	246
BstACI	GRCGYC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	234, 277, 376
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	231, 274, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	50, 73, 123
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	127, 149, 331
BstX2I	RGATCY	3 cut(s)	231, 274, 373
BstYI	RGATCY	3 cut(s)	231, 274, 373
BsuRI	GGCC	2 cut(s)	105, 128
BtgI	CCRYGG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	46
CciI	TCATGA	2 cut(s)	150, 337
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	3 cut(s)	77, 126, 127
CseI	GACGC	1 cut(s)	79
CviAII	CATG	3 cut(s)	151, 228, 338
CviJI	RGCY	6 cut(s)	13, 88, 105, 128, 140, 311
CviKI_1	RGCY	6 cut(s)	13, 88, 105, 128, 140, 311
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	3 cut(s)	233, 276, 375
DpnII	GATC	3 cut(s)	231, 274, 373
DriI	GACNNNNNGTC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	3 cut(s)	154, 231, 341
FaiI	YATR	5 cut(s)	152, 229, 330, 339, 379
FatI	CATG	3 cut(s)	150, 227, 337
Fnu4HI	GCNGC	3 cut(s)	138, 141, 345
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	3 cut(s)	138, 141, 345
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	3 cut(s)	138, 141, 345
HaeIII	GGCC	2 cut(s)	105, 128
HapII	CCGG	4 cut(s)	36, 51, 74, 124
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	71
Hin1II	CATG	3 cut(s)	154, 231, 341
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	36, 51, 74, 124
HphI	GGTGA	2 cut(s)	19, 43
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	151, 284, 338
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	154, 231, 341
Kzo9I	GATC	3 cut(s)	231, 274, 373
LpnPI	CCDG	6 cut(s)	49, 64, 87, 137, 211, 285
Lsp1109I	GCAGC	3 cut(s)	127, 149, 331
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	233, 276, 375
MboI	GATC	3 cut(s)	231, 274, 373
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	3 cut(s)	231, 274, 373
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	254, 357
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	95, 249, 291, 309
MseI	TTAA	3 cut(s)	132, 356, 360
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	4 cut(s)	36, 51, 74, 124
MspR9I	CCNGG	3 cut(s)	52, 75, 125
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	3 cut(s)	52, 75, 125
NdeII	GATC	3 cut(s)	231, 274, 373
NlaIII	CATG	3 cut(s)	154, 231, 341
NlaIV	GGNNCC	4 cut(s)	78, 122, 128, 182
NmuCI	GTSAC	1 cut(s)	31
PacI	TTAATTAA	1 cut(s)	360
PagI	TCATGA	2 cut(s)	150, 337
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	139, 142, 346
PspEI	GGTNACC	1 cut(s)	31
PspN4I	GGNNCC	4 cut(s)	78, 122, 128, 182
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	3 cut(s)	77, 126, 127
PstI	CTGCAG	1 cut(s)	145
PsuI	RGATCY	3 cut(s)	231, 274, 373
PvuII	CAGCTG	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	132, 356, 360
SatI	GCNGC	3 cut(s)	138, 141, 345
Sau3AI	GATC	3 cut(s)	231, 274, 373
Sau96I	GGNCC	3 cut(s)	77, 126, 127
ScrFI	CCNGG	3 cut(s)	52, 75, 125
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	15, 142, 313, 367
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	254, 357
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	50, 73, 123
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	2 cut(s)	68, 206
TasI	AATT	2 cut(s)	254, 357
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	132, 356, 360
Tru9I	TTAA	3 cut(s)	132, 356, 360
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	3 cut(s)	137, 140, 344
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	4 cut(s)	139, 158, 167, 216
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.