Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Reverse (-)

49059936 .. 49061099

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGTATATTCCTTAATCTCATGAAGCATTTTTCAAAATCGTCTATGCATGAAAGAGTACTTGAAATGTTCTATGCTATCCAGCCAGTAGTTCGGGAAAAGCCATCTCTCAAATGCATTAGTACTTGTTTAAATCTACTGATTGAAGCGAATCAGGTTGATTTGGCCCAACAGTTTCTCATGCATTTGAAGAAGAGTCTTAACTTGAAGCTGAATACATGCATTGTCAACATCTTGGTTAAGCACCATTGCACAAATGGGGATCTTGAATCTGCCTTCGAGGTTACTCTAATTGATGGTTTATGTCAAAGTGGAAGACTGACAGAAGCAATGGACCTGTTTGAGGAAATGATCTCAAAGGATCAAATATTGCCTGATGTGCTAACGTACAACATTTTGATTAATGGTTTTTGCCGTGGTGGGAAAGTTAATAGGGCAAGGAAGATATTGGATTTTATGAAGAGCAAAGGATGTAACCCAAATGTATTCAATTACTCAGATCTGATGAATGGATTCTGTAAGGAGGAAAGATTGGAGGAGACCAAGGAGCTTTTGGATGAAATGAAGAGCTTTGGTATCAAACCAGATACAGTTGTCTACACTACTTTAATTGATTGCTACTGTAGGACTGGGAGAGTTGACGAAGCGATAGAGTTGCTCAAAGAGATGAAAGAAAGACGGTGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGATTATGTAGAGAAGGCAGAATTGAGGATGCGCTTGAGATGCTGGACAAACTTCCTTATGAGGGTATCTATCTGAATAAGGGAAGCTACAGGATTGTGTTGAATTCCTTGTGTCAGAAAGGCGAACTAAACAAAGCTAAAGAGTTGTTGAGATTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAACGAGTTGCTAGTTAGCCTTTGTGAGGCTGGAATGGCAGATGATGCAACTATGGTTTTATTTGGATTGGTGGAGTTGGGTTTCAAACCACTGCCTGATTCCTGGGCTCTTTTTGTTGAATCAATTTGCAGAGAAAGAAAGCTGCTGCCTGCATTTGAACTGCTCGATGAATTAGTTAATGAAGAGTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

369

Amino Acids

42.05

Weight (kDa)

5.41

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	96 - 117	7.4e-08	PPR repeat
PPR_2	PF13041	96 - 139	3.6e-14	PPR repeat family
PPR	PF01535	96 - 120	6.5e-07	PPR repeat
PPR_long	PF17177	100 - 257	6.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	114 - 172	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	123 - 154	9.3e-13	PPR repeat
PPR_2	PF13041	125 - 174	2e-16	PPR repeat family
PPR	PF01535	129 - 158	4.2e-08	PPR repeat
PPR_1	PF12854	156 - 189	1.2e-09	PPR repeat
PPR_2	PF13041	160 - 205	1.1e-11	PPR repeat family
PPR_long	PF17177	178 - 290	2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	184 - 240	4.7e-13	Pentatricopeptide repeat domain
TPR_24	PF23276	185 - 258	1.2e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	192 - 224	1.7e-15	PPR repeat
PPR_2	PF13041	195 - 244	1.6e-19	PPR repeat family
PPR	PF01535	198 - 228	1.9e-11	PPR repeat
PPR_1	PF12854	227 - 257	5.9e-10	PPR repeat
PPR_2	PF13041	231 - 279	3.1e-11	PPR repeat family
PPR	PF01535	233 - 263	9.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	597
AclWI	GGATC	2 cut(s)	270, 369
AcsI	RAATTY	1 cut(s)	823
AfaI	GTAC	4 cut(s)	60, 124, 389, 897
AfiI	CCNNNNNNNGG	3 cut(s)	343, 782, 940
AjnI	CCWGG	1 cut(s)	1016
AluBI	AGCT	7 cut(s)	211, 550, 570, 689, 807, 857, 1057
AluI	AGCT	7 cut(s)	211, 550, 570, 689, 807, 857, 1057
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	270, 369
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	1057, 1060
ApoI	RAATTY	1 cut(s)	823
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	512
AspLEI	GCGC	1 cut(s)	754
AspS9I	GGNCC	2 cut(s)	166, 334
AvaII	GGWCC	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	579, 612
BanII	GRGCYC	1 cut(s)	1024
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	1044, 1047
BccI	CCATC	3 cut(s)	112, 290, 874
BceAI	ACGGC	1 cut(s)	399
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciT130I	CCWGG	1 cut(s)	1018
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	926
BfmI	CTRYAG	2 cut(s)	622, 808
BglII	AGATCT	1 cut(s)	499
BisI	GCNGC	2 cut(s)	1058, 1061
BlsI	GCNGC	2 cut(s)	1059, 1062
BmcAI	AGTACT	2 cut(s)	60, 124
Bme1390I	CCNGG	1 cut(s)	1018
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	166, 334
BmrFI	CCNGG	1 cut(s)	1018
BmrI	ACTGGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	739, 750, 949
BmuI	ACTGGG	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	415, 543, 1017
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 782, 940
Bse1I	ACTGG	2 cut(s)	86, 634
Bse3DI	GCAATG	2 cut(s)	247, 336
BseBI	CCWGG	1 cut(s)	1018
BseDI	CCNNGG	3 cut(s)	415, 543, 1017
BseGI	GGATG	3 cut(s)	476, 562, 754
BseLI	CCNNNNNNNGG	3 cut(s)	343, 782, 940
BseMI	GCAATG	2 cut(s)	247, 336
BseMII	CTCAG	1 cut(s)	510
BseNI	ACTGG	2 cut(s)	86, 634
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	1044, 1047
BshFI	GGCC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	343, 782, 940
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp143I	GATC	4 cut(s)	262, 351, 361, 499
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	509
BspHI	TCATGA	1 cut(s)	21
BspPI	GGATC	2 cut(s)	270, 369
BspQI	GCTCTTC	2 cut(s)	455, 560
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	2 cut(s)	247, 336
BsrI	ACTGG	2 cut(s)	86, 634
BssECI	CCNNGG	3 cut(s)	415, 543, 1017
BssMI	GATC	4 cut(s)	262, 351, 361, 499
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	1018
Bst4CI	ACNGT	5 cut(s)	174, 592, 623, 681, 697
Bst6I	CTCTTC	4 cut(s)	188, 455, 560, 1092
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	1 cut(s)	1065
BstDEI	CTNAG	1 cut(s)	496
BstDSI	CCRYGG	1 cut(s)	415
BstENI	CCTNNNNNAGG	2 cut(s)	341, 938
BstF5I	GGATG	3 cut(s)	476, 562, 754
BstHHI	GCGC	1 cut(s)	754
BstKTI	GATC	4 cut(s)	265, 354, 364, 502
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	4 cut(s)	262, 351, 361, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	379, 760, 950, 959
BstNI	CCWGG	1 cut(s)	1018
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	1016
BstSFI	CTRYAG	2 cut(s)	622, 808
BstV1I	GCAGC	2 cut(s)	1044, 1047
BstV2I	GAAGAC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	262, 499
BstYI	RGATCY	2 cut(s)	262, 499
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	1 cut(s)	415
BtsCI	GGATG	3 cut(s)	476, 562, 754
BtsI	GCAGTG	1 cut(s)	1004
BtsIMutI	CAGTG	1 cut(s)	1004
Cac8I	GCNNGC	1 cut(s)	1065
CciI	TCATGA	1 cut(s)	21
CfoI	GCGC	1 cut(s)	754
Cfr13I	GGNCC	2 cut(s)	166, 334
Csp6I	GTAC	4 cut(s)	59, 123, 388, 896
CviAII	CATG	4 cut(s)	22, 50, 181, 219
CviQI	GTAC	4 cut(s)	59, 123, 388, 896
DdeI	CTNAG	1 cut(s)	496
DpnI	GATC	4 cut(s)	264, 353, 363, 501
DpnII	GATC	4 cut(s)	262, 351, 361, 499
DraI	TTTAAA	1 cut(s)	132
Eam1104I	CTCTTC	4 cut(s)	188, 455, 560, 1092
EarI	CTCTTC	4 cut(s)	188, 455, 560, 1092
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	1024
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	334
EcoNI	CCTNNNNNAGG	2 cut(s)	341, 938
EcoRI	GAATTC	1 cut(s)	823
EcoRII	CCWGG	1 cut(s)	1016
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	4 cut(s)	51, 119, 186, 224
EcoT38I	GRGCYC	1 cut(s)	1024
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	25, 53, 184, 222
FatI	CATG	4 cut(s)	21, 49, 180, 218
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	1058, 1061
FokI	GGATG	3 cut(s)	483, 569, 761
FriOI	GRGCYC	1 cut(s)	1024
Fsp4HI	GCNGC	2 cut(s)	1058, 1061
FspBI	CTAG	1 cut(s)	926
GlaI	GCGC	1 cut(s)	753
GluI	GCNGC	2 cut(s)	1058, 1061
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	754
Hin1II	CATG	4 cut(s)	25, 53, 184, 222
Hin6I	GCGC	1 cut(s)	752
HinP1I	GCGC	1 cut(s)	752
HincII	GTYRAC	2 cut(s)	229, 640
HindII	GTYRAC	2 cut(s)	229, 640
HinfI	GANTC	6 cut(s)	151, 196, 269, 513, 1013, 1034
Hpy166II	GTNNAC	3 cut(s)	229, 598, 640
Hpy188I	TCNGA	4 cut(s)	499, 504, 795, 837
Hpy188III	TCNNGA	3 cut(s)	22, 95, 266
Hpy8I	GTNNAC	3 cut(s)	229, 598, 640
HpyAV	CCTTC	2 cut(s)	286, 728
HpyCH4III	ACNGT	5 cut(s)	174, 592, 623, 681, 697
HpyCH4IV	ACGT	1 cut(s)	386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	379, 760, 950, 959
HpyF3I	CTNAG	1 cut(s)	496
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	4 cut(s)	25, 53, 184, 222
HspAI	GCGC	1 cut(s)	752
Kzo9I	GATC	4 cut(s)	262, 351, 361, 499
LguI	GCTCTTC	2 cut(s)	455, 560
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	1044, 1047
LweI	GCATC	3 cut(s)	739, 750, 949
MaeI	CTAG	1 cut(s)	926
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	283, 473, 697
MalI	GATC	4 cut(s)	264, 353, 363, 501
MboI	GATC	4 cut(s)	262, 351, 361, 499
MboII	GAAGA	7 cut(s)	202, 205, 327, 454, 472, 577, 1109
MflI	RGATCY	2 cut(s)	262, 499
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	7 cut(s)	291, 490, 609, 741, 823, 1038, 1085
MlyI	GAGTC	1 cut(s)	205
MnlI	CCTC	8 cut(s)	274, 337, 517, 529, 713, 739, 775, 934
Mph1103I	ATGCAT	4 cut(s)	51, 119, 186, 224
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	9 cut(s)	15, 131, 201, 240, 402, 429, 608, 1092, 1108
MspR9I	CCNGG	1 cut(s)	1018
MvaI	CCWGG	1 cut(s)	1018
MwoI	GCNNNNNNNGC	4 cut(s)	379, 760, 950, 959
NdeII	GATC	4 cut(s)	262, 351, 361, 499
NlaIII	CATG	4 cut(s)	25, 53, 184, 222
NmuCI	GTSAC	1 cut(s)	697
NsiI	ATGCAT	4 cut(s)	51, 119, 186, 224
NspI	RCATGY	1 cut(s)	222
PagI	TCATGA	1 cut(s)	21
PciSI	GCTCTTC	2 cut(s)	455, 560
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	5 cut(s)	151, 269, 513, 1013, 1034
PkrI	GCNGC	2 cut(s)	1059, 1062
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	1016
PspGI	CCWGG	1 cut(s)	1016
PspPI	GGNCC	2 cut(s)	166, 334
PsuI	RGATCY	2 cut(s)	262, 499
RsaI	GTAC	4 cut(s)	60, 124, 389, 897
RsaNI	GTAC	4 cut(s)	59, 123, 388, 896
SapI	GCTCTTC	2 cut(s)	455, 560
SaqAI	TTAA	9 cut(s)	15, 131, 201, 240, 402, 429, 608, 1092, 1108
SatI	GCNGC	2 cut(s)	1058, 1061
Sau3AI	GATC	4 cut(s)	262, 351, 361, 499
Sau96I	GGNCC	2 cut(s)	166, 334
ScaI	AGTACT	2 cut(s)	60, 124
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	1018
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	3 cut(s)	739, 750, 949
SfcI	CTRYAG	2 cut(s)	622, 808
SinI	GGWCC	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	291, 490, 609, 741, 823, 1038, 1085
SspI	AATATT	1 cut(s)	369
SspMI	CTAG	1 cut(s)	926
StyD4I	CCNGG	1 cut(s)	1016
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	5 cut(s)	174, 592, 623, 681, 697
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	279, 1080
TasI	AATT	7 cut(s)	291, 490, 609, 741, 823, 1038, 1085
TatI	WGTACW	2 cut(s)	58, 122
TfiI	GAWTC	5 cut(s)	151, 269, 513, 1013, 1034
Tru1I	TTAA	9 cut(s)	15, 131, 201, 240, 402, 429, 608, 1092, 1108
Tru9I	TTAA	9 cut(s)	15, 131, 201, 240, 402, 429, 608, 1092, 1108
TscAI	CASTG	1 cut(s)	1011
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	2 cut(s)	1057, 1060
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	9 cut(s)	38, 66, 473, 521, 573, 578, 683, 1098, 1110
TspRI	CASTG	1 cut(s)	1011
VpaK11BI	GGWCC	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	402
XagI	CCTNNNNNAGG	2 cut(s)	341, 938
XapI	RAATTY	1 cut(s)	823
XceI	RCATGY	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	254, 550
XmiI	GTMKAC	1 cut(s)	597
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	1 cut(s)	926
ZrmI	AGTACT	2 cut(s)	60, 124
Zsp2I	ATGCAT	4 cut(s)	51, 119, 186, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.