Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002923.1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

165995 .. 168639

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002923.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgtgggcacaaagccgaaatttgggcccggtcaatagacaaaacttctatggccccaagggtggtgatgaaaatactgaattgccattgtcggactctccttcacctcaaacacttctggagccactgcagaccactccgaccatcgacgacccacttcagccactgaactccttctggttatcaaaattcaatgctcacaaaccagatccccctcccgaaaccacaaccacaaggacagaagctaggaggaaatccaaatatatttctcatgatgctgccatcaacttaattaaacgtgagagagatccacaacatgccttggaaatatttaacatggtttcggagcaaaagggtttcaaccacaataatgccacctatgcaactatcctcaataagcttgctcagtccaagaagttcaaggctgttgatgcagttctctatcaaatgaagtacgatgcctgcaaatatcatgagggtatatttcttaatctcatgaagcatttttcaaattcatctatgcatgaaagagtgcttgaaatgttctatgctatccagccaatagttcgggaaaagccgtctctcaaatgcataagtacttgtctaaatctactgattgaagcgaatcaggttgatttggcccaacagtttctcatgcatttgaagaagagtcttaacttgaagctgaatacatgcattgtcaacatcttggttaagcaccattgcacaaatggggatcttgaatctgcctttgaggttgtaaaggaaatgaaaaagtctaagctttcctatcctaatttgattacttactcgactctaattgatggtttatgtcaaagtggaagactgacagaagcaatggacctgtttgaggaaatgatctcaaaggatcagatattgcctgatgtgctaacgtacaacattttgattaatggtttttgccgtggtgggaaagttaatagggcaagaaagatattggattttatgaagagcaaaggatgcaacccaaatgtattcaattactcagctctgatgaatggattctgtaaggaggaaagattggaggagaccaaggagcttttggatgaaatgaagagctttggtatcaaaccagatacagttgtctacactactttaattgattgctactgtaggactgggagagttgacgaagcgatagagttgctcaaagagatgaaagaaagacggtgcaaagctgatactgtgactttcaatgtgatacttggaggactatgtagagaaggtagaattgaggatgcgcttgagatgctggacaaacttccttatgagggtatctatctgaataagggaagctacaggattgtgttgaattccttgtgtcagaaaggcgaactaaacaaagctaaagagttgttgagattgatgatgggtagggggtttgtaccacattatgcaacttcaaatgagttgctagttagcctttgtgaggctggaatggcagatgatgcaattatggctttatttggattggtggagatgggattcaagccactgcctgattcctggactctttttgttgaatcaatttgcagagaaagaaagctgctgcctgcatttgaactgctcgatgaattagttaatgaagagtttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

545

Amino Acids

62.16

Weight (kDa)

6.32

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1125
AclWI	GGATC	4 cut(s)	203, 302, 744, 897
AcsI	RAATTY	4 cut(s)	19, 188, 511, 1351
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	455, 598, 917, 1425
AfiI	CCNNNNNNNGG	5 cut(s)	22, 62, 871, 1310, 1468
AjnI	CCWGG	1 cut(s)	1544
Alw26I	GTCTC	2 cut(s)	585, 1061
AlwI	GGATC	4 cut(s)	203, 302, 744, 897
AlwNI	CAGNNNCTG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	25, 52, 639
ApaI	GGGCCC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	278, 1585, 1588
ApoI	RAATTY	4 cut(s)	19, 188, 511, 1351
AseI	ATTAAT	1 cut(s)	930
Asp700I	GAANNNNTTC	2 cut(s)	173, 1040
AspLEI	GCGC	1 cut(s)	1282
AspS9I	GGNCC	5 cut(s)	25, 26, 53, 640, 862
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	77, 96
AvaII	GGWCC	1 cut(s)	862
BaeGI	GKGCMC	2 cut(s)	10, 29
BaeI	ACNNNNGTAYC	2 cut(s)	1107, 1140
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	850
BbvI	GCAGC	3 cut(s)	265, 1572, 1575
BccI	CCATC	5 cut(s)	152, 290, 818, 1402, 1513
BceAI	ACGGC	2 cut(s)	562, 927
BcgI	CGANNNNNNTGC	2 cut(s)	1165, 1199
BciT130I	CCWGG	1 cut(s)	1546
BcnI	CCSGG	1 cut(s)	29
BcoDI	GTCTC	2 cut(s)	585, 1061
BfaI	CTAG	2 cut(s)	246, 1454
BfmI	CTRYAG	3 cut(s)	128, 1150, 1336
BisI	GCNGC	3 cut(s)	279, 1586, 1589
BlsI	GCNGC	3 cut(s)	280, 1587, 1590
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	2 cut(s)	29, 1546
Bme18I	GGWCC	1 cut(s)	862
BmgT120I	GGNCC	5 cut(s)	25, 26, 53, 640, 862
BmiI	GGNNCC	3 cut(s)	27, 55, 123
BmrFI	CCNGG	2 cut(s)	29, 1546
BmrI	ACTGGG	1 cut(s)	1167
BmsI	GCATC	7 cut(s)	265, 421, 448, 989, 1267, 1278, 1477
BmuI	ACTGGG	1 cut(s)	1167
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	1304
BpuMI	CCSGG	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	1061
BsaJI	CCNNGG	4 cut(s)	57, 321, 943, 1071
Bsc4I	CCNNNNNNNGG	5 cut(s)	22, 62, 871, 1310, 1468
Bse1I	ACTGG	1 cut(s)	1162
Bse3DI	GCAATG	2 cut(s)	721, 864
BseBI	CCWGG	1 cut(s)	1546
BseDI	CCNNGG	4 cut(s)	57, 321, 943, 1071
BseGI	GGATG	3 cut(s)	1004, 1090, 1282
BseLI	CCNNNNNNNGG	5 cut(s)	22, 62, 871, 1310, 1468
BseMI	GCAATG	2 cut(s)	721, 864
BseMII	CTCAG	2 cut(s)	419, 1038
BseNI	ACTGG	1 cut(s)	1162
BseRI	GAGGAG	1 cut(s)	1079
BseSI	GKGCMC	2 cut(s)	10, 29
BseXI	GCAGC	3 cut(s)	265, 1572, 1575
BshFI	GGCC	3 cut(s)	27, 54, 641
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	5 cut(s)	22, 62, 871, 1310, 1468
BsmAI	GTCTC	2 cut(s)	585, 1061
BsmBI	CGTCTC	1 cut(s)	585
BsnI	GGCC	3 cut(s)	27, 54, 641
Bso31I	GGTCTC	1 cut(s)	1061
Bsp120I	GGGCCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	10, 29
Bsp143I	GATC	5 cut(s)	208, 307, 736, 879, 889
BspANI	GGCC	3 cut(s)	27, 54, 641
BspCNI	CTCAG	2 cut(s)	418, 1037
BspHI	TCATGA	3 cut(s)	271, 472, 495
BspLI	GGNNCC	3 cut(s)	27, 55, 123
BspMAI	CTGCAG	1 cut(s)	132
BspPI	GGATC	4 cut(s)	203, 302, 744, 897
BspQI	GCTCTTC	2 cut(s)	983, 1088
BspTNI	GGTCTC	1 cut(s)	1061
BsrDI	GCAATG	2 cut(s)	721, 864
BsrI	ACTGG	1 cut(s)	1162
BssECI	CCNNGG	4 cut(s)	57, 321, 943, 1071
BssMI	GATC	5 cut(s)	208, 307, 736, 879, 889
BssT1I	CCWWGG	3 cut(s)	57, 321, 1071
Bst2UI	CCWGG	1 cut(s)	1546
Bst4CI	ACNGT	5 cut(s)	648, 1120, 1151, 1209, 1225
Bst6I	CTCTTC	4 cut(s)	662, 983, 1088, 1620
BstAPI	GCANNNNNTGC	2 cut(s)	999, 1487
BstC8I	GCNNGC	3 cut(s)	402, 463, 1593
BstDEI	CTNAG	3 cut(s)	405, 780, 1024
BstDSI	CCRYGG	1 cut(s)	943
BstENI	CCTNNNNNAGG	2 cut(s)	869, 1466
BstF5I	GGATG	3 cut(s)	1004, 1090, 1282
BstHHI	GCGC	1 cut(s)	1282
BstKTI	GATC	5 cut(s)	211, 310, 739, 882, 892
BstMAI	GTCTC	2 cut(s)	585, 1061
BstMBI	GATC	5 cut(s)	208, 307, 736, 879, 889
BstMWI	GCNNNNNNNGC	8 cut(s)	380, 431, 907, 999, 1288, 1478, 1487, 1496
BstNI	CCWGG	1 cut(s)	1546
BstNSI	RCATGY	2 cut(s)	320, 696
BstSCI	CCNGG	2 cut(s)	27, 1544
BstSFI	CTRYAG	3 cut(s)	128, 1150, 1336
BstSLI	GKGCMC	2 cut(s)	10, 29
BstV1I	GCAGC	3 cut(s)	265, 1572, 1575
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	3 cut(s)	208, 307, 736
BstYI	RGATCY	3 cut(s)	208, 307, 736
BsuRI	GGCC	3 cut(s)	27, 54, 641
BtgI	CCRYGG	1 cut(s)	943
BtsCI	GGATG	3 cut(s)	1004, 1090, 1282
BtsI	GCAGTG	2 cut(s)	125, 1532
BtsIMutI	CAGTG	3 cut(s)	125, 164, 1532
Cac8I	GCNNGC	3 cut(s)	402, 463, 1593
CaiI	CAGNNNCTG	1 cut(s)	166
CciI	TCATGA	3 cut(s)	271, 472, 495
CfoI	GCGC	1 cut(s)	1282
Cfr13I	GGNCC	5 cut(s)	25, 26, 53, 640, 862
Csp6I	GTAC	4 cut(s)	454, 597, 916, 1424
CviAII	CATG	8 cut(s)	272, 317, 337, 473, 496, 524, 655, 693
CviQI	GTAC	4 cut(s)	454, 597, 916, 1424
DdeI	CTNAG	3 cut(s)	405, 780, 1024
DpnI	GATC	5 cut(s)	210, 309, 738, 881, 891
DpnII	GATC	5 cut(s)	208, 307, 736, 879, 889
Eam1104I	CTCTTC	4 cut(s)	662, 983, 1088, 1620
EarI	CTCTTC	4 cut(s)	662, 983, 1088, 1620
Eco130I	CCWWGG	3 cut(s)	57, 321, 1071
Eco24I	GRGCYC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	1061
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	143
EcoNI	CCTNNNNNAGG	2 cut(s)	869, 1466
EcoRI	GAATTC	1 cut(s)	1351
EcoRII	CCWGG	1 cut(s)	1544
EcoT14I	CCWWGG	3 cut(s)	57, 321, 1071
EcoT22I	ATGCAT	4 cut(s)	525, 593, 660, 698
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	3 cut(s)	57, 321, 1071
Esp3I	CGTCTC	1 cut(s)	585
FaeI	CATG	8 cut(s)	275, 320, 340, 476, 499, 527, 658, 696
FatI	CATG	8 cut(s)	271, 316, 336, 472, 495, 523, 654, 692
FblI	GTMKAC	1 cut(s)	1125
Fnu4HI	GCNGC	3 cut(s)	279, 1586, 1589
FokI	GGATG	3 cut(s)	1011, 1097, 1289
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	3 cut(s)	279, 1586, 1589
FspBI	CTAG	2 cut(s)	246, 1454
GlaI	GCGC	1 cut(s)	1281
GluI	GCNGC	3 cut(s)	279, 1586, 1589
GsuI	CTGGAG	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	27, 54, 641
HapII	CCGG	1 cut(s)	29
HhaI	GCGC	1 cut(s)	1282
Hin1II	CATG	8 cut(s)	275, 320, 340, 476, 499, 527, 658, 696
Hin6I	GCGC	1 cut(s)	1280
HinP1I	GCGC	1 cut(s)	1280
HincII	GTYRAC	2 cut(s)	703, 1168
HindII	GTYRAC	2 cut(s)	703, 1168
HindIII	AAGCTT	2 cut(s)	398, 782
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	77, 96
Hpy166II	GTNNAC	3 cut(s)	703, 1126, 1168
Hpy188I	TCNGA	7 cut(s)	94, 141, 346, 894, 1032, 1323, 1365
Hpy188III	TCNNGA	7 cut(s)	119, 218, 272, 473, 496, 569, 740
Hpy8I	GTNNAC	3 cut(s)	703, 1126, 1168
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	111, 184, 1256
HpyCH4III	ACNGT	5 cut(s)	648, 1120, 1151, 1209, 1225
HpyCH4IV	ACGT	2 cut(s)	298, 914
HpyF10VI	GCNNNNNNNGC	8 cut(s)	380, 431, 907, 999, 1288, 1478, 1487, 1496
HpyF3I	CTNAG	3 cut(s)	405, 780, 1024
HpySE526I	ACGT	2 cut(s)	298, 914
Hsp92II	CATG	8 cut(s)	275, 320, 340, 476, 499, 527, 658, 696
HspAI	GCGC	1 cut(s)	1280
Kzo9I	GATC	5 cut(s)	208, 307, 736, 879, 889
LguI	GCTCTTC	2 cut(s)	983, 1088
LmnI	GCTCC	3 cut(s)	121, 346, 1075
Lsp1109I	GCAGC	3 cut(s)	265, 1572, 1575
LweI	GCATC	7 cut(s)	265, 421, 448, 989, 1267, 1278, 1477
MaeI	CTAG	2 cut(s)	246, 1454
MaeII	ACGT	2 cut(s)	298, 914
MaeIII	GTNAC	1 cut(s)	1225
MalI	GATC	5 cut(s)	210, 309, 738, 881, 891
MboI	GATC	5 cut(s)	208, 307, 736, 879, 889
MboII	GAAGA	6 cut(s)	676, 679, 855, 1000, 1105, 1637
MflI	RGATCY	3 cut(s)	208, 307, 736
MhlI	GDGCHC	2 cut(s)	10, 29
MlyI	GAGTC	4 cut(s)	89, 679, 808, 1543
MmeI	TCCRAC	2 cut(s)	72, 164
Mph1103I	ATGCAT	4 cut(s)	525, 593, 660, 698
MroXI	GAANNNNTTC	2 cut(s)	173, 1040
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 1546
MvaI	CCWGG	1 cut(s)	1546
MwoI	GCNNNNNNNGC	8 cut(s)	380, 431, 907, 999, 1288, 1478, 1487, 1496
NciI	CCSGG	1 cut(s)	29
NdeII	GATC	5 cut(s)	208, 307, 736, 879, 889
NlaIII	CATG	8 cut(s)	275, 320, 340, 476, 499, 527, 658, 696
NlaIV	GGNNCC	3 cut(s)	27, 55, 123
NmuCI	GTSAC	1 cut(s)	1225
NsiI	ATGCAT	4 cut(s)	525, 593, 660, 698
NspI	RCATGY	2 cut(s)	320, 696
PacI	TTAATTAA	1 cut(s)	294
PagI	TCATGA	3 cut(s)	271, 472, 495
PciSI	GCTCTTC	2 cut(s)	983, 1088
PdmI	GAANNNNTTC	2 cut(s)	173, 1040
PfeI	GAWTC	6 cut(s)	625, 743, 1041, 1524, 1541, 1562
PfoI	TCCNGGA	1 cut(s)	1544
PkrI	GCNGC	3 cut(s)	280, 1587, 1590
PleI	GAGTC	4 cut(s)	89, 678, 808, 1543
PpsI	GAGTC	4 cut(s)	89, 678, 808, 1543
PshBI	ATTAAT	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	1544
PspGI	CCWGG	1 cut(s)	1544
PspN4I	GGNNCC	3 cut(s)	27, 55, 123
PspOMI	GGGCCC	1 cut(s)	25
PspPI	GGNCC	5 cut(s)	25, 26, 53, 640, 862
PstI	CTGCAG	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	166
PsuI	RGATCY	3 cut(s)	208, 307, 736
RsaI	GTAC	4 cut(s)	455, 598, 917, 1425
RsaNI	GTAC	4 cut(s)	454, 597, 916, 1424
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	2 cut(s)	983, 1088
SatI	GCNGC	3 cut(s)	279, 1586, 1589
Sau3AI	GATC	5 cut(s)	208, 307, 736, 879, 889
Sau96I	GGNCC	5 cut(s)	25, 26, 53, 640, 862
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	4 cut(s)	89, 679, 808, 1543
ScrFI	CCNGG	2 cut(s)	29, 1546
SduI	GDGCHC	2 cut(s)	10, 29
SfaNI	GCATC	7 cut(s)	265, 421, 448, 989, 1267, 1278, 1477
SfcI	CTRYAG	3 cut(s)	128, 1150, 1336
SinI	GGWCC	1 cut(s)	862
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	1283
SmoI	CTYRAG	1 cut(s)	1283
SspI	AATATT	1 cut(s)	330
SspMI	CTAG	2 cut(s)	246, 1454
StyD4I	CCNGG	2 cut(s)	27, 1544
StyI	CCWWGG	3 cut(s)	57, 321, 1071
TaaI	ACNGT	5 cut(s)	648, 1120, 1151, 1209, 1225
TaiI	ACGT	2 cut(s)	301, 917
TaqI	TCGA	3 cut(s)	147, 812, 1608
TatI	WGTACW	1 cut(s)	596
TfiI	GAWTC	6 cut(s)	625, 743, 1041, 1524, 1541, 1562
TscAI	CASTG	3 cut(s)	132, 171, 1539
TseFI	GTSAC	1 cut(s)	1225
TseI	GCWGC	3 cut(s)	278, 1585, 1588
Tsp45I	GTSAC	1 cut(s)	1225
TspRI	CASTG	3 cut(s)	132, 171, 1539
VpaK11BI	GGWCC	1 cut(s)	862
VspI	ATTAAT	1 cut(s)	930
XagI	CCTNNNNNAGG	2 cut(s)	869, 1466
XapI	RAATTY	4 cut(s)	19, 188, 511, 1351
XceI	RCATGY	2 cut(s)	320, 696
XcmI	CCANNNNNNNNNTGG	2 cut(s)	728, 1078
XmiI	GTMKAC	1 cut(s)	1125
XmnI	GAANNNNTTC	2 cut(s)	173, 1040
XspI	CTAG	2 cut(s)	246, 1454
ZrmI	AGTACT	1 cut(s)	598
Zsp2I	ATGCAT	4 cut(s)	525, 593, 660, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.