Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Reverse (-)

62352967 .. 62353799

Gene Structure 833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACCATCTATTTAAGATCCTCATGCTCTTCAGGTTGCAGGGCCCTTAAAACAGCTGCAGTTTTCATGAATCTAAGGAGAGTTCATTTTAGTTGGTGCCGTTGGTTCGCTTCCTCTCCTTCGACAATCTCATCATCTGTTTCATGGATCTCTCCTCTGCGGTTATCAAAATTCAATGCTCACAAACCAGATCCCCCTCCCGAGACCACAACCACAAGGACAGAAGGTAGGAGGAAATCCAAATATATTTCCCATGATGCTGCCATCAACTTAATTAAACGTGAGAGAGATCCACAACATGCCTTGGAAATATTTAACATGGTTTCGGAGCAAAAGGGTTTCAACCACAATAATGCCACCTATGCAACTATCCTCAATAAGCTTGGTCAGTCCAAGAAGTTCAAGGCTGTTGATGCAGTTCTCTATCAAATGAAGTACGATGCCTGCAAATATCATGAGGTGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

156

Amino Acids

17.89

Weight (kDa)

9.72

Isoelectric Point (pI)

64.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	4 cut(s)	12, 155, 185, 284
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	175, 343, 403
AluBI	AGCT	2 cut(s)	56, 382
AluI	AGCT	2 cut(s)	56, 382
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	12, 155, 185, 284
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	42
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	56, 260
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	42, 43
AvaI	CYCGRG	1 cut(s)	200
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	43, 247
BccI	CCATC	2 cut(s)	14, 272
BceAI	ACGGC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	57, 261
BlsI	GCNGC	2 cut(s)	58, 262
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	2 cut(s)	44, 98
BmsI	GCATC	3 cut(s)	247, 403, 430
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	43, 247
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	17, 147, 190, 289
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	44
BspHI	TCATGA	2 cut(s)	66, 454
BspLI	GGNNCC	2 cut(s)	44, 98
BspMAI	CTGCAG	1 cut(s)	61
BspPI	GGATC	4 cut(s)	12, 155, 185, 284
BspQI	GCTCTTC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	96
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	17, 147, 190, 289
BssT1I	CCWWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	74
BstKTI	GATC	4 cut(s)	20, 150, 193, 292
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	17, 147, 190, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 413
BstNSI	RCATGY	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	43, 247
BstX2I	RGATCY	4 cut(s)	17, 147, 190, 289
BstYI	RGATCY	4 cut(s)	17, 147, 190, 289
BsuRI	GGCC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	2 cut(s)	66, 454
Cfr13I	GGNCC	2 cut(s)	42, 43
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	7 cut(s)	24, 67, 144, 254, 299, 319, 455
CviJI	RGCY	4 cut(s)	44, 56, 382, 407
CviKI_1	RGCY	4 cut(s)	44, 56, 382, 407
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	4 cut(s)	19, 149, 192, 291
DpnII	GATC	4 cut(s)	17, 147, 190, 289
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	42, 43
EcoT14I	CCWWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	7 cut(s)	27, 70, 147, 257, 302, 322, 458
FaiI	YATR	9 cut(s)	25, 68, 145, 246, 255, 300, 320, 363, 456
FatI	CATG	7 cut(s)	23, 66, 143, 253, 298, 318, 454
Fnu4HI	GCNGC	2 cut(s)	57, 261
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	57, 261
GluI	GCNGC	2 cut(s)	57, 261
HaeIII	GGCC	1 cut(s)	44
Hin1II	CATG	7 cut(s)	27, 70, 147, 257, 302, 322, 458
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	3 cut(s)	67, 200, 455
HpyAV	CCTTC	2 cut(s)	129, 218
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	39, 59, 365, 416, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 413
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	7 cut(s)	27, 70, 147, 257, 302, 322, 458
Kzo9I	GATC	4 cut(s)	17, 147, 190, 289
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	4 cut(s)	18, 25, 201, 457
Lsp1109I	GCAGC	2 cut(s)	43, 247
LweI	GCATC	3 cut(s)	247, 403, 430
MaeII	ACGT	1 cut(s)	280
MalI	GATC	4 cut(s)	19, 149, 192, 291
MboI	GATC	4 cut(s)	17, 147, 190, 289
MboII	GAAGA	1 cut(s)	21
MflI	RGATCY	4 cut(s)	17, 147, 190, 289
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	170, 273
MnlI	CCTC	7 cut(s)	31, 124, 165, 207, 225, 383, 451
MseI	TTAA	5 cut(s)	14, 48, 272, 276, 315
MslI	CAYNNNNRTG	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	362, 413
NdeII	GATC	4 cut(s)	17, 147, 190, 289
NlaIII	CATG	7 cut(s)	27, 70, 147, 257, 302, 322, 458
NlaIV	GGNNCC	2 cut(s)	44, 98
NspI	RCATGY	1 cut(s)	302
PacI	TTAATTAA	1 cut(s)	276
PagI	TCATGA	2 cut(s)	66, 454
PciSI	GCTCTTC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	58, 262
PspN4I	GGNNCC	2 cut(s)	44, 98
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	4 cut(s)	17, 147, 190, 289
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	5 cut(s)	14, 48, 272, 276, 315
SatI	GCNGC	2 cut(s)	57, 261
Sau3AI	GATC	4 cut(s)	17, 147, 190, 289
Sau96I	GGNCC	2 cut(s)	42, 43
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	7 cut(s)	37, 58, 229, 283, 362, 384, 462
SfaNI	GCATC	3 cut(s)	247, 403, 430
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	351
Sse9I	AATT	2 cut(s)	170, 273
SsiI	CCGC	1 cut(s)	160
SspI	AATATT	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	303
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	170, 273
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	5 cut(s)	14, 48, 272, 276, 315
Tru9I	TTAA	5 cut(s)	14, 48, 272, 276, 315
TseI	GCWGC	2 cut(s)	56, 260
TspDTI	ATGAA	5 cut(s)	55, 74, 83, 132, 446
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.