Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Forward (+)

43224475 .. 43227831

Gene Structure 3357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G528200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGAATGTTATGAGAGTTAACTTTAGTCAGTGCCGGTGGTTCTCATCCTCTCCTTCAACACTCTCAGCATCACTTCCATGGATCTCTCCTCTTCAGTTTACAAAAGTCAACACTCACAAACCAGACCCCCCACCCGAAACCACTACCACCCAGACGGAAACCAGGAGGAAAACCAAGTATATTTCTCACGAATCTACCATCAACCTAATCAAACGTGAGAGAGATCCACAACATGCCTTGGAAATATTTAACATGGTATCGGAACAAAAGGGTTTTAACCACAATAATGCCACTTATGCAACTATCCTCCAGAAGCTTGCTCAGTCCAAGAAGTTCAAGGCTATCGATGCAATTCTTCACCAAATGACCTATGAGACCTGCAAATTCCATGAGGGTATATTCCTTAACCTCATGAAGCATTTTTCAAAATCCTCTATGCATGAAAGAGTGCTTGAAATGTTCTATGCTATCCAGCCAATAGTTCGTGAAAAGCCCTCTCTCAAATGCATCAGTACTTGTCTCAATTTACTGATTGAATCGAATCAGGTTGATTTGGCCCAACAATTTCTCATGCATCTGAAAAAGAATCTTAACTTCAAGCCAAATACGTGCATTGTCAACATCTTGGTTAAGCACCATTGCAAGAATGGGGACCTTGAATCTGCCTTTGAGGTTGTGAAGGAAATGAAAAAGTCTAAAATTTCTTACCCTAATTTGGTTACGTACTCAACTCTGTTGGGTGGTCTCTGTGAAAGTGATAAACTCACAGAAGCAATGGAGCTCTTTGAAGAAATGATTTCAAAGGATCAAATATTGCCTGATGCCCTAACTTACAGCGTTTTGATTAATGGGTTTTGCCATGGTGGGAAAGTTGATAGGGCTAGGAAGATATTGGAGTTTATGAAGAGCAATGGATGCCAGCCAAATGTATTCAATTACACGGCTCTGATGAATGGTTTCTGTAAGGAGAAAAGATTGCAGGAGGCCAAGGAGATTTTTCATGAAATGACGAGCTTTGGTATAAAGCCTGATACAGTTGGCTACACTGCTTTAATCAATTGCTGCTGTAGGACAGGAAAAATGAATGAAGCTATAGAGTTGCTCAAAGAGATGAAAGAAAGAGAATGCAAAGCTGATACTGTGACTTTCAATGTGATACTTGGAGGGTTGTGTAGAGAAGGTAGAATTGAGGATGCTCTTGAGATGCTGGAGAAACTTCCTTATGAGGGTGTCTATCTGAACAAGGCAAGCTACAGAATTGTGTTGAATTTCTTGTGTCAAAAAGGTGAATTGAACAAAGCGACACAGTTGTTGGGGTTGATGATGGGTAGGGGGTTTGTACCACATTATGCAACTTCAAATGACTTGCTGGTTCGACTTTCTGAGGCTGGAATGGCAGAAAACGCTGTTATGGCTTTGTCTAGATTAGTGGAGATGGGGTTCAAACCACAGCCTGATTCATGGGCTCTTTTGGTAGAGTCAATCTGCAGAGAAAGAAAGCTGCTGTCTGCATTTGAACTGCTCGATGAGTTAGTTGTTATAGAGCAGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

518

Amino Acids

59.0

Weight (kDa)

8.19

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	386
AclWI	GGATC	3 cut(s)	89, 218, 813
AcsI	RAATTY	3 cut(s)	383, 699, 1267
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	3 cut(s)	514, 725, 1341
AfiI	CCNNNNNNNGG	2 cut(s)	715, 1226
AjnI	CCWGG	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	1424, 1456
AluBI	AGCT	7 cut(s)	316, 781, 1014, 1091, 1133, 1251, 1501
AluI	AGCT	7 cut(s)	316, 781, 1014, 1091, 1133, 1251, 1501
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	3 cut(s)	368, 524, 749
AlwI	GGATC	3 cut(s)	89, 218, 813
AoxI	GGCC	2 cut(s)	555, 984
ApeKI	GCWGC	2 cut(s)	1062, 1501
ApoI	RAATTY	3 cut(s)	383, 699, 1267
AseI	ATTAAT	1 cut(s)	846
Asp700I	GAANNNNTTC	1 cut(s)	956
AspS9I	GGNCC	2 cut(s)	556, 652
AsuHPI	GGTGA	2 cut(s)	350, 1298
AvaII	GGWCC	1 cut(s)	652
BanII	GRGCYC	2 cut(s)	783, 1468
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	1049, 1488
BccI	CCATC	3 cut(s)	206, 1318, 1429
BceAI	ACGGC	1 cut(s)	957
BciT130I	CCWGG	1 cut(s)	163
BcoDI	GTCTC	3 cut(s)	368, 524, 749
BfaI	CTAG	2 cut(s)	882, 1422
BfmI	CTRYAG	4 cut(s)	1066, 1092, 1252, 1486
BfuAI	ACCTGC	1 cut(s)	386
BisI	GCNGC	2 cut(s)	1063, 1502
BlsI	GCNGC	2 cut(s)	1064, 1503
BmcAI	AGTACT	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	556, 652
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	8 cut(s)	77, 337, 516, 583, 811, 905, 1183, 1194
BpmI	CTGGAG	2 cut(s)	293, 1229
BpuEI	CTTGAG	1 cut(s)	1220
Bsa29I	ATCGAT	1 cut(s)	345
BsaAI	YACGTR	2 cut(s)	609, 723
BsaI	GGTCTC	2 cut(s)	368, 749
BsaJI	CCNNGG	4 cut(s)	77, 237, 859, 987
BsaXI	ACNNNNNCTCC	2 cut(s)	1424, 1454
Bsc4I	CCNNNNNNNGG	2 cut(s)	715, 1226
Bse118I	RCCGGY	1 cut(s)	33
Bse3DI	GCAATG	3 cut(s)	637, 780, 916
BseBI	CCWGG	1 cut(s)	163
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	77, 237, 859, 987
BseGI	GGATG	3 cut(s)	44, 920, 1198
BseLI	CCNNNNNNNGG	2 cut(s)	715, 1226
BseMI	GCAATG	3 cut(s)	637, 780, 916
BseMII	CTCAG	3 cut(s)	78, 335, 1374
BseRI	GAGGAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	1049, 1488
BshFI	GGCC	2 cut(s)	557, 986
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	715, 1226
BsmAI	GTCTC	3 cut(s)	368, 524, 749
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	1130
BsnI	GGCC	2 cut(s)	557, 986
Bso31I	GGTCTC	2 cut(s)	368, 749
Bsp1286I	GDGCHC	2 cut(s)	783, 1468
Bsp143I	GATC	3 cut(s)	81, 223, 805
Bsp19I	CCATGG	2 cut(s)	77, 859
BspANI	GGCC	2 cut(s)	557, 986
BspCNI	CTCAG	3 cut(s)	77, 334, 1375
BspDI	ATCGAT	1 cut(s)	345
BspHI	TCATGA	2 cut(s)	411, 1000
BspLI	GGNNCC	1 cut(s)	653
BspMAI	CTGCAG	1 cut(s)	1490
BspMI	ACCTGC	1 cut(s)	386
BspPI	GGATC	3 cut(s)	89, 218, 813
BspQI	GCTCTTC	1 cut(s)	899
BspTNI	GGTCTC	2 cut(s)	368, 749
BsrDI	GCAATG	3 cut(s)	637, 780, 916
BsrFI	RCCGGY	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	77, 237, 859, 987
BssMI	GATC	3 cut(s)	81, 223, 805
BssT1I	CCWWGG	4 cut(s)	77, 237, 859, 987
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	3 cut(s)	1036, 1141, 1308
Bst6I	CTCTTC	2 cut(s)	96, 899
BstAPI	GCANNNNNTGC	1 cut(s)	915
BstBAI	YACGTR	2 cut(s)	609, 723
BstC8I	GCNNGC	3 cut(s)	318, 920, 1249
BstDEI	CTNAG	3 cut(s)	64, 321, 1383
BstDSI	CCRYGG	2 cut(s)	77, 859
BstF5I	GGATG	3 cut(s)	44, 920, 1198
BstKTI	GATC	3 cut(s)	84, 226, 808
BstMAI	GTCTC	3 cut(s)	368, 524, 749
BstMBI	GATC	3 cut(s)	81, 223, 805
BstMWI	GCNNNNNNNGC	6 cut(s)	296, 347, 915, 1394, 1403, 1412
BstNI	CCWGG	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	4 cut(s)	1066, 1092, 1252, 1486
BstSNI	TACGTA	1 cut(s)	723
BstV1I	GCAGC	2 cut(s)	1049, 1488
BstX2I	RGATCY	2 cut(s)	81, 223
BstYI	RGATCY	2 cut(s)	81, 223
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	557, 986
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	2 cut(s)	77, 859
BtsCI	GGATG	3 cut(s)	44, 920, 1198
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	2 cut(s)	35, 1044
BveI	ACCTGC	1 cut(s)	386
Cac8I	GCNNGC	3 cut(s)	318, 920, 1249
CciI	TCATGA	2 cut(s)	411, 1000
Cfr10I	RCCGGY	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	556, 652
ClaI	ATCGAT	1 cut(s)	345
Csp6I	GTAC	3 cut(s)	513, 724, 1340
CviQI	GTAC	3 cut(s)	513, 724, 1340
DdeI	CTNAG	3 cut(s)	64, 321, 1383
DpnI	GATC	3 cut(s)	83, 225, 807
DpnII	GATC	3 cut(s)	81, 223, 805
Eam1104I	CTCTTC	2 cut(s)	96, 899
EarI	CTCTTC	2 cut(s)	96, 899
Ecl136II	GAGCTC	1 cut(s)	781
Eco105I	TACGTA	1 cut(s)	723
Eco130I	CCWWGG	4 cut(s)	77, 237, 859, 987
Eco24I	GRGCYC	2 cut(s)	783, 1468
Eco31I	GGTCTC	2 cut(s)	368, 749
Eco47I	GGWCC	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	781
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	4 cut(s)	77, 237, 859, 987
EcoT22I	ATGCAT	3 cut(s)	441, 509, 576
EcoT38I	GRGCYC	2 cut(s)	783, 1468
ErhI	CCWWGG	4 cut(s)	77, 237, 859, 987
FaqI	GGGAC	1 cut(s)	665
Fnu4HI	GCNGC	2 cut(s)	1063, 1502
FokI	GGATG	3 cut(s)	31, 927, 1205
FriOI	GRGCYC	2 cut(s)	783, 1468
Fsp4HI	GCNGC	2 cut(s)	1063, 1502
FspBI	CTAG	2 cut(s)	882, 1422
GluI	GCNGC	2 cut(s)	1063, 1502
GsuI	CTGGAG	2 cut(s)	293, 1229
HaeIII	GGCC	2 cut(s)	557, 986
HapII	CCGG	1 cut(s)	34
HincII	GTYRAC	3 cut(s)	19, 109, 619
HindII	GTYRAC	3 cut(s)	19, 109, 619
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	7 cut(s)	191, 536, 541, 586, 659, 1457, 1478
HpaI	GTTAAC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	350, 1298
Hpy166II	GTNNAC	4 cut(s)	19, 99, 109, 619
Hpy188I	TCNGA	5 cut(s)	262, 579, 948, 1239, 1384
Hpy188III	TCNNGA	7 cut(s)	188, 310, 412, 485, 1001, 1199, 1422
Hpy8I	GTNNAC	4 cut(s)	19, 99, 109, 619
HpyAV	CCTTC	3 cut(s)	63, 673, 1172
HpyCH4III	ACNGT	3 cut(s)	1036, 1141, 1308
HpyCH4IV	ACGT	3 cut(s)	214, 608, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	296, 347, 915, 1394, 1403, 1412
HpyF3I	CTNAG	3 cut(s)	64, 321, 1383
HpySE526I	ACGT	3 cut(s)	214, 608, 722
KspAI	GTTAAC	1 cut(s)	19
Kzo9I	GATC	3 cut(s)	81, 223, 805
LguI	GCTCTTC	1 cut(s)	899
LmnI	GCTCC	1 cut(s)	778
Lsp1109I	GCAGC	2 cut(s)	1049, 1488
LweI	GCATC	8 cut(s)	77, 337, 516, 583, 811, 905, 1183, 1194
MaeI	CTAG	2 cut(s)	882, 1422
MaeII	ACGT	3 cut(s)	214, 608, 722
MaeIII	GTNAC	2 cut(s)	718, 1141
MalI	GATC	3 cut(s)	83, 225, 807
MboI	GATC	3 cut(s)	81, 223, 805
MboII	GAAGA	5 cut(s)	83, 347, 800, 898, 916
MfeI	CAATTG	1 cut(s)	1057
MflI	RGATCY	2 cut(s)	81, 223
MhlI	GDGCHC	2 cut(s)	783, 1468
MlyI	GAGTC	1 cut(s)	1487
Mph1103I	ATGCAT	3 cut(s)	441, 509, 576
MroXI	GAANNNNTTC	1 cut(s)	956
MseI	TTAA	9 cut(s)	18, 249, 276, 405, 591, 630, 846, 1052, 1552
MslI	CAYNNNNRTG	2 cut(s)	76, 285
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	163
MunI	CAATTG	1 cut(s)	1057
Mva1269I	GAATGC	1 cut(s)	1130
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	6 cut(s)	296, 347, 915, 1394, 1403, 1412
NcoI	CCATGG	2 cut(s)	77, 859
NdeII	GATC	3 cut(s)	81, 223, 805
NlaIV	GGNNCC	1 cut(s)	653
NmuCI	GTSAC	1 cut(s)	1141
NsiI	ATGCAT	3 cut(s)	441, 509, 576
NspI	RCATGY	1 cut(s)	236
PagI	TCATGA	2 cut(s)	411, 1000
PciSI	GCTCTTC	1 cut(s)	899
PctI	GAATGC	1 cut(s)	1130
PdmI	GAANNNNTTC	1 cut(s)	956
PfeI	GAWTC	6 cut(s)	191, 536, 541, 586, 659, 1457
PkrI	GCNGC	2 cut(s)	1064, 1503
PleI	GAGTC	1 cut(s)	1486
PpsI	GAGTC	1 cut(s)	1486
Ppu21I	YACGTR	2 cut(s)	609, 723
PpuMI	RGGWCCY	1 cut(s)	652
PshBI	ATTAAT	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	2 cut(s)	556, 652
PspPPI	RGGWCCY	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	1490
PsuI	RGATCY	2 cut(s)	81, 223
RsaI	GTAC	3 cut(s)	514, 725, 1341
RsaNI	GTAC	3 cut(s)	513, 724, 1340
RseI	CAYNNNNRTG	2 cut(s)	76, 285
SacI	GAGCTC	1 cut(s)	783
SapI	GCTCTTC	1 cut(s)	899
SaqAI	TTAA	9 cut(s)	18, 249, 276, 405, 591, 630, 846, 1052, 1552
SatI	GCNGC	2 cut(s)	1063, 1502
Sau3AI	GATC	3 cut(s)	81, 223, 805
Sau96I	GGNCC	2 cut(s)	556, 652
ScaI	AGTACT	1 cut(s)	514
SchI	GAGTC	1 cut(s)	1487
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	783, 1468
SfaNI	GCATC	8 cut(s)	77, 337, 516, 583, 811, 905, 1183, 1194
SfcI	CTRYAG	4 cut(s)	1066, 1092, 1252, 1486
SinI	GGWCC	1 cut(s)	652
SmiMI	CAYNNNNRTG	2 cut(s)	76, 285
SmlI	CTYRAG	1 cut(s)	1199
SmoI	CTYRAG	1 cut(s)	1199
SnaBI	TACGTA	1 cut(s)	723
SspI	AATATT	2 cut(s)	246, 813
SspMI	CTAG	2 cut(s)	882, 1422
SstI	GAGCTC	1 cut(s)	783
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	4 cut(s)	77, 237, 859, 987
TaaI	ACNGT	3 cut(s)	1036, 1141, 1308
TaiI	ACGT	3 cut(s)	217, 611, 725
TaqI	TCGA	4 cut(s)	345, 539, 1375, 1524
TatI	WGTACW	1 cut(s)	512
TfiI	GAWTC	6 cut(s)	191, 536, 541, 586, 659, 1457
Tru1I	TTAA	9 cut(s)	18, 249, 276, 405, 591, 630, 846, 1052, 1552
Tru9I	TTAA	9 cut(s)	18, 249, 276, 405, 591, 630, 846, 1052, 1552
TscAI	CASTG	2 cut(s)	35, 1051
TseFI	GTSAC	1 cut(s)	1141
TseI	GCWGC	2 cut(s)	1062, 1501
Tsp45I	GTSAC	1 cut(s)	1141
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	35, 1051
VpaK11BI	GGWCC	1 cut(s)	652
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	3 cut(s)	383, 699, 1267
XbaI	TCTAGA	1 cut(s)	1421
XceI	RCATGY	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	644
XmnI	GAANNNNTTC	1 cut(s)	956
XspI	CTAG	2 cut(s)	882, 1422
ZrmI	AGTACT	1 cut(s)	514
Zsp2I	ATGCAT	3 cut(s)	441, 509, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.