AT5G18600

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003089
Physical Location & Seq
Reverse (-)
6183166 .. 6184038
873 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G18600.1

Sequence Viewer

Length: 309 bp
ATGGATATGATAACGAAGATGGTGATGGAGAGACCGGTGGTGATTTACAGCAAGAGCTCTTGCTGTATGTCTCACACGATCAAGACTTTGCTCTGCGATTTCGGAGCAAATCCAGCGGTTTACGAGCTGGATGAGATATCTAGAGGGAGGGAGATCGAGCAGGCGTTGTTGCGGCTCGGGTGTAGCCCCGCAGTTCCGGGCGTTTTCATTGGTGGAGAGTTGGTCGGTGGAGCCAACGAGGTCATGAGTCTACATCTTAACGGATCCTTGATTCCCATGCTTAAGCGGGCTGGTGCATTGTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.04

Weight (kDa)

6.06

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 3.6e-13 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 250
AciI CCGC 4 cut(s) 116, 172, 189, 286
AclWI GGATC 2 cut(s) 258, 271
AflII CTTAAG 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 34
AluBI AGCT 2 cut(s) 57, 127
AluI AGCT 2 cut(s) 57, 127
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 25, 75
AlwI GGATC 2 cut(s) 258, 271
Ama87I CYCGRG 1 cut(s) 176
AsiGI ACCGGT 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 34, 52
AvaI CYCGRG 1 cut(s) 176
BamHI GGATCC 1 cut(s) 263
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BccI CCATC 2 cut(s) 13, 19
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 25, 75
BfaI CTAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 232, 265
BmrFI CCNGG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse118I RCCGGY 1 cut(s) 34
BseGI GGATG 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 35, 197
BsmAI GTCTC 2 cut(s) 25, 75
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 78, 153, 263
BspACI CCGC 4 cut(s) 116, 172, 189, 286
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 232, 265
BspPI GGATC 2 cut(s) 258, 271
BspTI CTTAAG 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 3 cut(s) 78, 153, 263
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 162, 288
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 3 cut(s) 81, 156, 266
BstMAI GTCTC 2 cut(s) 25, 75
BstMBI GATC 3 cut(s) 78, 153, 263
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 162, 288
CciI TCATGA 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 2 cut(s) 244, 277
CviJI RGCY 6 cut(s) 57, 127, 175, 186, 233, 290
CviKI_1 RGCY 6 cut(s) 57, 127, 175, 186, 233, 290
DpnI GATC 3 cut(s) 80, 155, 265
DpnII GATC 3 cut(s) 78, 153, 263
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco32I GATATC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 57
EcoRV GATATC 1 cut(s) 138
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 247, 280
FaiI YATR 4 cut(s) 8, 68, 245, 278
FatI CATG 2 cut(s) 243, 276
FauI CCCGC 2 cut(s) 196, 279
FblI GTMKAC 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 173
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 173
FspBI CTAG 1 cut(s) 141
GluI GCNGC 1 cut(s) 173
HapII CCGG 2 cut(s) 35, 197
Hin1II CATG 2 cut(s) 247, 280
HinfI GANTC 2 cut(s) 247, 271
HpaII CCGG 2 cut(s) 35, 197
HphI GGTGA 2 cut(s) 34, 52
Hpy166II GTNNAC 2 cut(s) 121, 251
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 82, 141, 244
Hpy8I GTNNAC 2 cut(s) 121, 251
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 2 cut(s) 247, 280
Kzo9I GATC 3 cut(s) 78, 153, 263
LmnI GCTCC 2 cut(s) 104, 230
LpnPI CCDG 6 cut(s) 48, 113, 126, 146, 210, 276
MaeI CTAG 1 cut(s) 141
MalI GATC 3 cut(s) 80, 155, 265
MboI GATC 3 cut(s) 78, 153, 263
MboII GAAGA 1 cut(s) 28
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 3 cut(s) 137, 141, 232
MseI TTAA 2 cut(s) 258, 282
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 2 cut(s) 35, 197
MspR9I CCNGG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 1 cut(s) 198
NdeII GATC 3 cut(s) 78, 153, 263
NlaIII CATG 2 cut(s) 247, 280
NlaIV GGNNCC 2 cut(s) 232, 265
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 1 cut(s) 271
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 1 cut(s) 174
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 2 cut(s) 232, 265
PsuI RGATCY 1 cut(s) 263
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 258, 282
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 3 cut(s) 78, 153, 263
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 59
SetI ASST 3 cut(s) 59, 129, 243
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 4 cut(s) 116, 172, 189, 286
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 1 cut(s) 156
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 2 cut(s) 258, 282
Tru9I TTAA 2 cut(s) 258, 282
TspDTI ATGAA 1 cut(s) 196
TspGWI ACGGA 1 cut(s) 276
Vha464I CTTAAG 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 250
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.