Rh4DG230000

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003089
Physical Location & Seq
Forward (+)
43617582 .. 43617890
309 bp
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UTR
Exon/CDS
Intron
Rh4DG230000.1

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTGGCAAAGATGGTGTCCGAGAGACCTGTGGTGATCTTCAGCAAGAACTCATGCTGCATGAGCCACTCAATCAAGACCTTGCTTTGCGACTTTGGGGTGAACCCAGCAGTGTATGAACTGGATGAGATGCAAAGAGGGAGAGAAATAGAGCAAGCTCTGTTGAGGCTCGGATGCAACCCATCGGTGCCGGCTGTGTTCATTGGTGGCGAATTTGTTGGTGGAGCCAATGAAGTCATGAGTCTTCATCTTAAGCGCTCCTTAATCCCCATGCTTAAGCGCGTCGGTGCTTTATGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

7.69

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 5e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 193
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 264, 288
AsuHPI GGTGA 2 cut(s) 52, 118
BanI GGYRCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 13, 196
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmiI GGNNCC 2 cut(s) 195, 232
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 136, 185
BseNI ACTGG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 8
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 2 cut(s) 195, 232
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 2 cut(s) 162, 198
BstF5I GGATG 2 cut(s) 136, 185
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 288
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 136, 185
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 162, 198
CciI TCATGA 1 cut(s) 243
CfoI GCGC 2 cut(s) 264, 288
Cfr10I RCCGGY 1 cut(s) 196
CseI GACGC 1 cut(s) 277
CviAII CATG 4 cut(s) 60, 67, 244, 277
CviJI RGCY 5 cut(s) 72, 164, 175, 200, 233
CviKI_1 RGCY 5 cut(s) 72, 164, 175, 200, 233
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 31
FaeI CATG 4 cut(s) 63, 70, 247, 280
FaiI YATR 6 cut(s) 61, 68, 123, 245, 278, 301
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 4 cut(s) 59, 66, 243, 276
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 2 cut(s) 143, 192
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 2 cut(s) 263, 287
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 277
HhaI GCGC 2 cut(s) 264, 288
Hin1II CATG 4 cut(s) 63, 70, 247, 280
Hin6I GCGC 2 cut(s) 262, 286
HinP1I GCGC 2 cut(s) 262, 286
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 52, 118
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 28, 179
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 66, 139, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
Hsp92II CATG 4 cut(s) 63, 70, 247, 280
HspAI GCGC 2 cut(s) 262, 286
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 4 cut(s) 48, 113, 126, 210
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 126, 170
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 37, 242
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 2 cut(s) 137, 165
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 3 cut(s) 258, 269, 282
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 69
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 1 cut(s) 42
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 4 cut(s) 63, 70, 247, 280
NlaIV GGNNCC 2 cut(s) 195, 232
PagI TCATGA 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 195, 232
SaqAI TTAA 3 cut(s) 258, 269, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 256
SetI ASST 3 cut(s) 37, 89, 166
SfaNI GCATC 2 cut(s) 126, 170
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 1 cut(s) 218
SsiI CCGC 1 cut(s) 8
TasI AATT 1 cut(s) 218
Tru1I TTAA 3 cut(s) 258, 269, 282
Tru9I TTAA 3 cut(s) 258, 269, 282
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 63
TspDTI ATGAA 4 cut(s) 138, 196, 242, 252
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 2 cut(s) 257, 281
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.