RLG00000007688

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003089
Physical Location & Seq
Reverse (-)
19895945 .. 19896253
309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007688

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTGACAAAGATGGCTTCCGAGAGACCGGTGGTGATCTTCAGCAAGAACTCATGCTGCATGTCCCACTCAATCAAGACCTTGCTTTGCGATTTTGGGGTCAACCCGGCAGTGCATGAGCTTGATGAGATGCAAAGAGGGAGAGAGATAGACCAAGCTCTTTTAAGGCTCGGATGCAACCCATCTGTGCCAGCTGTGTTCATTGGTGGCGAATTTATTGGTGGACCCAATGAGGTCATAAGTCTTCATCTTAAGCGCTCCTTAATTCCCATGCTTAAGCGCGTGGGCGCATTATGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.21

Weight (kDa)

7.71

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 2.2e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AgeI ACCGGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 127, 164, 200
AluI AGCT 3 cut(s) 127, 164, 200
Alw26I GTCTC 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 218
AsiGI ACCGGT 1 cut(s) 34
AspLEI GCGC 3 cut(s) 264, 288, 296
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 22, 52
AvaII GGWCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 13, 196
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 34
BseGI GGATG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 288
BshTI ACCGGT 1 cut(s) 34
BsiSI CCGG 2 cut(s) 35, 113
BslFI GGGAC 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 8
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 232
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 3 cut(s) 264, 288, 296
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 3 cut(s) 264, 288, 296
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 4 cut(s) 60, 67, 122, 277
CviJI RGCY 5 cut(s) 23, 127, 164, 175, 200
CviKI_1 RGCY 5 cut(s) 23, 127, 164, 175, 200
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 31
FaeI CATG 4 cut(s) 63, 70, 125, 280
FaiI YATR 6 cut(s) 61, 68, 123, 245, 278, 301
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 1 cut(s) 55
FatI CATG 4 cut(s) 59, 66, 121, 276
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 3 cut(s) 263, 287, 295
GluI GCNGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 2 cut(s) 35, 113
HhaI GCGC 3 cut(s) 264, 288, 296
Hin1II CATG 4 cut(s) 63, 70, 125, 280
Hin6I GCGC 3 cut(s) 262, 286, 294
HinP1I GCGC 3 cut(s) 262, 286, 294
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HpaII CCGG 2 cut(s) 35, 113
HphI GGTGA 2 cut(s) 22, 52
Hpy166II GTNNAC 2 cut(s) 109, 230
Hpy188I TCNGA 2 cut(s) 28, 179
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 2 cut(s) 109, 230
HpyCH4V TGCA 4 cut(s) 66, 121, 139, 183
Hsp92II CATG 4 cut(s) 63, 70, 125, 280
HspAI GCGC 3 cut(s) 262, 286, 294
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 3 cut(s) 48, 126, 210
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 126, 170
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 37, 242
MluCI AATT 2 cut(s) 218, 270
MnlI CCTC 2 cut(s) 137, 232
MseI TTAA 4 cut(s) 170, 258, 269, 282
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 2 cut(s) 35, 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 288
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 42
NlaIII CATG 4 cut(s) 63, 70, 125, 280
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 200
SaqAI TTAA 4 cut(s) 170, 258, 269, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 42
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 113
SetI ASST 5 cut(s) 89, 129, 166, 202, 243
SfaNI GCATC 2 cut(s) 126, 170
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 2 cut(s) 218, 270
SsiI CCGC 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 111
TasI AATT 2 cut(s) 218, 270
Tru1I TTAA 4 cut(s) 170, 258, 269, 282
Tru9I TTAA 4 cut(s) 170, 258, 269, 282
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 196, 242
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 2 cut(s) 257, 281
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 218
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.