Prupe.1G140400_v2.0.a1

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003089
Physical Location & Seq
Reverse (-)
11033366 .. 11033674
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G140400.1

Sequence Viewer

Length: 309 bp
ATGGAGGTGGTGACAAAGATGGCTTCAGAGAGACCAGTTGTGATCTTCAGCAAGAGCTCATGCTGCATGTGCCATTCAATCAAGACCCTGTTTTCTGATTTTGGGGTGAACCCAGCAGTGTACGAGCTTGACGAGATGCAGAGAGGGAAAGAGATAGAGCAAGCTCTTTCAAGGCTTGGCTGCAACCCTACTGTGCCTGCAGTGTTCATTGGGGGAGAGTTTGTGGGTGGAGCCAATGAGGTCATGAATCTTCATCTTCAGCGCTCCTTAATCCCGATGCTTAAACGCGCTGGAGCGTTGTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

6.71

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AcuI CTGAAG 3 cut(s) 9, 31, 242
AfaI GTAC 1 cut(s) 122
AfeI AGCGCT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 78, 171
AluBI AGCT 3 cut(s) 57, 127, 164
AluI AGCT 3 cut(s) 57, 127, 164
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 63, 180
AspLEI GCGC 2 cut(s) 264, 290
AsuHPI GGTGA 2 cut(s) 22, 118
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 50, 167
BccI CCATC 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 198
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 2 cut(s) 64, 181
BlsI GCNGC 2 cut(s) 65, 182
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 126, 267
BsaI GGTCTC 1 cut(s) 25
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse1I ACTGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 50, 167
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 42
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 35
BssMI GATC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 162, 198
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 290
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 198
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 50, 167
BtsI GCAGTG 2 cut(s) 123, 207
BtsIMutI CAGTG 2 cut(s) 123, 207
Cac8I GCNNGC 2 cut(s) 162, 198
CciI TCATGA 1 cut(s) 243
CfoI GCGC 2 cut(s) 264, 290
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 60, 67, 244
CviJI RGCY 7 cut(s) 23, 57, 127, 164, 175, 180, 233
CviKI_1 RGCY 7 cut(s) 23, 57, 127, 164, 175, 180, 233
CviQI GTAC 1 cut(s) 121
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 3 cut(s) 9, 31, 242
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 3 cut(s) 63, 70, 247
FaiI YATR 3 cut(s) 61, 68, 245
FatI CATG 3 cut(s) 59, 66, 243
Fnu4HI GCNGC 2 cut(s) 64, 181
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 64, 181
GlaI GCGC 2 cut(s) 263, 289
GluI GCNGC 2 cut(s) 64, 181
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 265
HhaI GCGC 2 cut(s) 264, 290
Hin1II CATG 3 cut(s) 63, 70, 247
Hin6I GCGC 2 cut(s) 262, 288
HinP1I GCGC 2 cut(s) 262, 288
HinfI GANTC 1 cut(s) 247
HphI GGTGA 2 cut(s) 22, 118
Hpy166II GTNNAC 2 cut(s) 109, 121
Hpy188I TCNGA 2 cut(s) 28, 97
Hpy188III TCNNGA 3 cut(s) 82, 244, 274
Hpy8I GTNNAC 2 cut(s) 109, 121
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 4 cut(s) 66, 139, 183, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
Hsp92II CATG 3 cut(s) 63, 70, 247
HspAI GCGC 2 cut(s) 262, 288
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 3 cut(s) 230, 269, 293
LpnPI CCDG 5 cut(s) 48, 101, 126, 210, 276
Lsp1109I GCAGC 2 cut(s) 50, 167
LweI GCATC 2 cut(s) 126, 267
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 3 cut(s) 37, 242, 248
MhlI GDGCHC 1 cut(s) 59
MnlI CCTC 2 cut(s) 137, 232
MseI TTAA 2 cut(s) 269, 282
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NdeII GATC 1 cut(s) 42
NlaIII CATG 3 cut(s) 63, 70, 247
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 70
PagI TCATGA 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 65, 182
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 202
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 269, 282
SatI GCNGC 2 cut(s) 64, 181
Sau3AI GATC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 9, 59, 129, 166, 243
SfaNI GCATC 2 cut(s) 126, 267
SfcI CTRYAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 59
TaaI ACNGT 1 cut(s) 193
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 269, 282
Tru9I TTAA 2 cut(s) 269, 282
TscAI CASTG 2 cut(s) 123, 207
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 63, 180
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 196, 242, 260
TspRI CASTG 2 cut(s) 123, 207
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.