FvH4_4g17471

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003089
Physical Location & Seq
Forward (+)
21417691 .. 21418009
319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17471.t1

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTGACAAAGATGGCGTCCGAGAGACCAGTGGTGATCTTTAGCAAGAGCTCATGTTGCATGAGCCACTCAATCAAGACCTTGCTTTCCGACTTTGGTGTGAACCCCGCAGTGTATGAGCTTGATGAGATGCACAGAGGGAGAGAAATAGAGCAAGCTCTGTTGAGGCTCGGATGCAGCCCATCTGTGCCGGCTGTGTTCATTGGTGGCGAATTTGTTGGCGGAGCCAATGAAGTCATGAGCCTGCATCTTAAGCGCTCTTTAATCCCCATGCTTAAGCGCGTTGGTGCATTGTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.16

Weight (kDa)

7.76

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1.4e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 8, 114, 228
AcsI RAATTY 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 23
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AluBI AGCT 3 cut(s) 57, 127, 164
AluI AGCT 3 cut(s) 57, 127, 164
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 25
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspLEI GCGC 2 cut(s) 264, 288
AsuHPI GGTGA 2 cut(s) 22, 52
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 13, 196
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 3 cut(s) 126, 170, 262
BsaHI GRCGYC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 3 cut(s) 8, 114, 228
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 196
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 1 cut(s) 42
BssNI GRCGYC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 23
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 3 cut(s) 162, 198, 251
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 288
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 63, 259
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 195
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 42, 123
Cac8I GCNNGC 3 cut(s) 162, 198, 251
CciI TCATGA 1 cut(s) 243
CfoI GCGC 2 cut(s) 264, 288
Cfr10I RCCGGY 1 cut(s) 196
CseI GACGC 1 cut(s) 12
CviAII CATG 4 cut(s) 60, 67, 244, 277
CviJI RGCY 9 cut(s) 57, 72, 127, 164, 175, 186, 200, 233, 249
CviKI_1 RGCY 9 cut(s) 57, 72, 127, 164, 175, 186, 200, 233, 249
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 4 cut(s) 63, 70, 247, 280
FaiI YATR 5 cut(s) 61, 68, 123, 245, 278
FatI CATG 4 cut(s) 59, 66, 243, 276
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 184
GlaI GCGC 2 cut(s) 263, 287
GluI GCNGC 1 cut(s) 184
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 12
HhaI GCGC 2 cut(s) 264, 288
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 63, 70, 247, 280
Hin6I GCGC 2 cut(s) 262, 286
HinP1I GCGC 2 cut(s) 262, 286
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 22, 52
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 28, 97, 179
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 5 cut(s) 66, 139, 183, 253, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 259
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 63, 70, 247, 280
HspAI GCGC 2 cut(s) 262, 286
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 1 cut(s) 230
LpnPI CCDG 3 cut(s) 48, 210, 263
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 126, 170, 262
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 137, 165
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 3 cut(s) 258, 269, 282
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 63, 259
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 1 cut(s) 42
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 4 cut(s) 63, 70, 247, 280
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 10
PagI TCATGA 1 cut(s) 243
PdiI GCCGGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 3 cut(s) 258, 269, 282
SatI GCNGC 1 cut(s) 184
Sau3AI GATC 1 cut(s) 42
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 59, 89, 129, 166
SfaNI GCATC 3 cut(s) 126, 170, 262
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 1 cut(s) 218
SsiI CCGC 3 cut(s) 8, 114, 228
SstI GAGCTC 1 cut(s) 59
TasI AATT 1 cut(s) 218
Tru1I TTAA 3 cut(s) 258, 269, 282
Tru9I TTAA 3 cut(s) 258, 269, 282
TscAI CASTG 2 cut(s) 42, 123
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 196, 252
TspRI CASTG 2 cut(s) 42, 123
Vha464I CTTAAG 2 cut(s) 257, 281
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.