Rh4BG234600

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003089
Physical Location & Seq
Forward (+)
40066323 .. 40067047
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG234600.1

Sequence Viewer

Length: 309 bp
ATGGAGGCAGTGACAAGGATGGTGTCCGAAAGACCCGTAGTGATCTTCAGCAAGAGCTCATGCTGCATGTGCCACTCAATCAAGACCTTGCTTTGTGACTTTGGGGTGAACCCAGCAGTTCATGAGCTTGATGAGATGCAAGAAGGGAGAGAGATAGAGCAAGCTCTGTCAAGGCTTGGATGCAACCCATCCGTGCCGGCTGTGTTCATTGGCGGTGAACTCGTGGGTGGAGCCAATGAGATCATGAGTCTTCATCTTAACCGCTCCTTGATCCCCATGCTTAAGCACGTCGGCGCGTTATGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

102

Amino Acids

11.14

Weight (kDa)

5.73

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 1.2e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 264
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 213, 262
AclWI GGATC 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 31
AflII CTTAAG 1 cut(s) 281
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 3 cut(s) 57, 127, 164
AluI AGCT 3 cut(s) 57, 127, 164
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 265
ApeKI GCWGC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 118, 227
BanII GRGCYC 1 cut(s) 59
BauI CACGAG 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 13, 196
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 65
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 196
BseGI GGATG 3 cut(s) 24, 185, 188
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 42, 240, 270
BspACI CCGC 2 cut(s) 213, 262
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 2 cut(s) 121, 243
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 3 cut(s) 42, 240, 270
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 162, 198
BstF5I GGATG 3 cut(s) 24, 185, 188
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 3 cut(s) 45, 243, 273
BstMBI GATC 3 cut(s) 42, 240, 270
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstNSI RCATGY 1 cut(s) 70
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 242
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 3 cut(s) 24, 185, 188
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 162, 198
CciI TCATGA 2 cut(s) 121, 243
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 196
CviAII CATG 5 cut(s) 60, 67, 122, 244, 277
CviJI RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
CviKI_1 RGCY 6 cut(s) 57, 127, 164, 175, 200, 233
DpnI GATC 3 cut(s) 44, 242, 272
DpnII GATC 3 cut(s) 42, 240, 270
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 5 cut(s) 63, 70, 125, 247, 280
FaiI YATR 6 cut(s) 61, 68, 123, 245, 278, 301
FatI CATG 5 cut(s) 59, 66, 121, 243, 276
Fnu4HI GCNGC 1 cut(s) 64
FokI GGATG 3 cut(s) 31, 175, 192
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 64
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 116
HapII CCGG 1 cut(s) 197
HhaI GCGC 1 cut(s) 296
Hin1II CATG 5 cut(s) 63, 70, 125, 247, 280
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 197
HphI GGTGA 2 cut(s) 118, 227
Hpy166II GTNNAC 2 cut(s) 109, 218
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 3 cut(s) 82, 122, 244
Hpy8I GTNNAC 2 cut(s) 109, 218
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 66, 139, 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 5 cut(s) 63, 70, 125, 247, 280
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 196
KroNI GCCGGC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 42, 240, 270
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 2 cut(s) 126, 210
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 2 cut(s) 126, 170
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 2 cut(s) 10, 95
MalI GATC 3 cut(s) 44, 242, 272
MbiI CCGCTC 1 cut(s) 264
MboI GATC 3 cut(s) 42, 240, 270
MboII GAAGA 2 cut(s) 37, 242
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 256
MroNI GCCGGC 1 cut(s) 196
MseI TTAA 2 cut(s) 258, 282
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NaeI GCCGGC 1 cut(s) 198
NdeII GATC 3 cut(s) 42, 240, 270
NgoMIV GCCGGC 1 cut(s) 196
NlaIII CATG 5 cut(s) 63, 70, 125, 247, 280
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 10, 95
NspI RCATGY 1 cut(s) 70
PagI TCATGA 2 cut(s) 121, 243
PdiI GCCGGC 1 cut(s) 198
PkrI GCNGC 1 cut(s) 65
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 258, 282
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 3 cut(s) 42, 240, 270
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 59, 89, 129, 166, 291
SfaNI GCATC 2 cut(s) 126, 170
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SsiI CCGC 2 cut(s) 213, 262
SstI GAGCTC 1 cut(s) 59
TaiI ACGT 1 cut(s) 291
Tru1I TTAA 2 cut(s) 258, 282
Tru9I TTAA 2 cut(s) 258, 282
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 10, 95
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 2 cut(s) 10, 95
TspDTI ATGAA 3 cut(s) 110, 196, 242
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 281
XceI RCATGY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.