Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001962.1

Orthogroup ID

OG0003089

Physical Location & Seq

Genomic Coordinates Forward (+)

13407 .. 13697

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001962.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atggcgtccgagagaccagtggtgatcttcagcaagagctcatgctgcatgagccactccatcaagaccttactttgcgactttggggtgaacccagcagtgtatgagctggatgagatgcaaagaggtagagaaatagagcaagctctgtcgaggcttggatgcaatccatctgtgccggctgtgttcattggtggtgaatttgtgggcggagccaatgagatcatgagtcttcatcttaaccgctccttaatccccatgcttaagcgcgttggcgcattgtgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

96

Amino Acids

10.51

Weight (kDa)

6.71

Isoelectric Point (pI)

58.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18600
fragaria_vesca	FvH4_4g17440 FvH4_4g17471 FvH4_4g17490 FvH4_4g17491 FvH4_4g17500 FvH4_4g17501
malus_domestica	MD13G1172100.v1.1
prunus_persica	Prupe.1G140400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0421381 RchiOBHm_Chr4g0421391 RchiOBHm_Chr4g0421401 RchiOBHm_Chr4g0421411
rosa_laevigata	RLG00000007688 RLG00000007691
rosa_multiflora	Rmu_sc0001962.1_g000003 Rmu_sc0001962.1_g000004 Rmu_sc0001962.1_g000006 Rmu_sc0001962.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363660 Rroxscaffold_5G00363670
rosa_rugosa	Rorug04G0170600 Rorug04G0170700 Rorug04G0170800 Rorug04G0170800
rosa_samantha	Rh4AG231600 Rh4AG231700 Rh4BG234400 Rh4BG234600 Rh4CG245800 Rh4CG245900 Rh4CG246200 Rh4DG229900 Rh4DG230000
rosa_wichuraiana	Rw4G020240 Rw4G020250 Rw4G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	210, 244
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	5
AflII	CTTAAG	1 cut(s)	263
AluBI	AGCT	3 cut(s)	39, 109, 146
AluI	AGCT	3 cut(s)	39, 109, 146
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	270, 278
AsuHPI	GGTGA	3 cut(s)	34, 100, 209
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	68, 178
BcoDI	GTCTC	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	2 cut(s)	108, 152
BpiI	GAAGAC	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	7
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	118, 167
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	7
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	24, 222
BspACI	CCGC	2 cut(s)	210, 244
BspFNI	CGCG	1 cut(s)	270
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	17
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	2 cut(s)	24, 222
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	144, 180
BstF5I	GGATG	2 cut(s)	118, 167
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	270, 278
BstKTI	GATC	2 cut(s)	27, 225
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	2 cut(s)	24, 222
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 51
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	118, 167
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	24, 105
Cac8I	GCNNGC	2 cut(s)	144, 180
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	2 cut(s)	270, 278
Cfr10I	RCCGGY	1 cut(s)	178
CviAII	CATG	4 cut(s)	42, 49, 226, 259
CviJI	RGCY	7 cut(s)	39, 54, 109, 146, 157, 182, 215
CviKI_1	RGCY	7 cut(s)	39, 54, 109, 146, 157, 182, 215
DpnI	GATC	2 cut(s)	26, 224
DpnII	GATC	2 cut(s)	24, 222
EciI	GGCGGA	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	7
Eco53kI	GAGCTC	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	4 cut(s)	45, 52, 229, 262
FaiI	YATR	5 cut(s)	43, 50, 105, 227, 260
FatI	CATG	4 cut(s)	41, 48, 225, 258
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	125, 174
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	46
GlaI	GCGC	2 cut(s)	269, 277
GluI	GCNGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	98
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	2 cut(s)	270, 278
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	45, 52, 229, 262
Hin6I	GCGC	2 cut(s)	268, 276
HinP1I	GCGC	2 cut(s)	268, 276
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	3 cut(s)	34, 100, 209
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	2 cut(s)	64, 226
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	48, 121, 165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 51
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	45, 52, 229, 262
HspAI	GCGC	2 cut(s)	268, 276
KroI	GCCGGC	1 cut(s)	178
KroNI	GCCGGC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	24, 222
LmnI	GCTCC	2 cut(s)	212, 251
LpnPI	CCDG	4 cut(s)	30, 95, 108, 192
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	2 cut(s)	108, 152
MalI	GATC	2 cut(s)	26, 224
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	2 cut(s)	24, 222
MboII	GAAGA	2 cut(s)	19, 224
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	2 cut(s)	119, 147
MroNI	GCCGGC	1 cut(s)	178
MseI	TTAA	3 cut(s)	240, 251, 264
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	45, 51
NaeI	GCCGGC	1 cut(s)	180
NdeII	GATC	2 cut(s)	24, 222
NgoMIV	GCCGGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	45, 52, 229, 262
NlaIV	GGNNCC	1 cut(s)	214
PagI	TCATGA	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	41
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	240, 251, 264
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	2 cut(s)	24, 222
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	5 cut(s)	41, 71, 111, 130, 148
SfaNI	GCATC	2 cut(s)	108, 152
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	2 cut(s)	210, 244
SstI	GAGCTC	1 cut(s)	41
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	3 cut(s)	240, 251, 264
Tru9I	TTAA	3 cut(s)	240, 251, 264
TscAI	CASTG	2 cut(s)	24, 105
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	178, 224
TspRI	CASTG	2 cut(s)	24, 105
Vha464I	CTTAAG	1 cut(s)	263
XapI	RAATTY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.