FvH4_4g17490

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003089
Physical Location & Seq
Forward (+)
21441227 .. 21441535
309 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17490.t1

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTGACAAAGATGGTGTCCGAGAGACCGGTGGTGATCTTCAGCAAGAGCTCATGCTGCATAAGCCACTCAATCAAGACCTTGCTTTCCGACTTTGGGGTGAACCCAGCAGTGTATGAGCTTGATGAGATGCAAAGAGGGAGAGAAATAGAGCAAGCTCTGTTGAGGCTCGGGTGCAGCCCATCTGTTCCGGCTGTGTTCATTGGTGGCGAATTTGTTGGCGGAGCCAATGAAGTCATGAGTCTTCATCTTAAGCGCTCCTTAATCCCAATGCTTAAGCGTGTCGGTGCATTGTGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.16

Weight (kDa)

7.74

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 8e-15 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 228
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 102
AflII CTTAAG 2 cut(s) 257, 281
AgeI ACCGGT 1 cut(s) 34
AluBI AGCT 3 cut(s) 57, 127, 164
AluI AGCT 3 cut(s) 57, 127, 164
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 176
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 63, 183
ApoI RAATTY 1 cut(s) 218
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AsiGI ACCGGT 1 cut(s) 34
AspLEI GCGC 1 cut(s) 264
AsuHPI GGTGA 3 cut(s) 22, 52, 118
AvaI CYCGRG 1 cut(s) 176
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 50, 195
BccI CCATC 2 cut(s) 13, 196
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 2 cut(s) 64, 184
BlsI GCNGC 2 cut(s) 65, 185
BmeT110I CYCGRG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 232
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse118I RCCGGY 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 102
BseXI GCAGC 2 cut(s) 50, 195
BseYI CCCAGC 1 cut(s) 112
BsgI GTGCAG 1 cut(s) 202
BshTI ACCGGT 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 2 cut(s) 35, 197
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 8, 228
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 34
BssAI RCCGGY 1 cut(s) 34
BssMI GATC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstV1I GCAGC 2 cut(s) 50, 195
BstV2I GAAGAC 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 34
CviAII CATG 2 cut(s) 60, 244
CviJI RGCY 8 cut(s) 57, 72, 127, 164, 175, 186, 200, 233
CviKI_1 RGCY 8 cut(s) 57, 72, 127, 164, 175, 186, 200, 233
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 63, 247
FaiI YATR 4 cut(s) 61, 68, 123, 245
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 2 cut(s) 59, 243
Fnu4HI GCNGC 2 cut(s) 64, 184
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 64, 184
GlaI GCGC 1 cut(s) 263
GluI GCNGC 2 cut(s) 64, 184
GsaI CCCAGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 2 cut(s) 35, 197
HhaI GCGC 1 cut(s) 264
Hin1II CATG 2 cut(s) 63, 247
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 35, 197
HphI GGTGA 3 cut(s) 22, 52, 118
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 28, 97
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 66, 139, 183, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
Hsp92II CATG 2 cut(s) 63, 247
HspAI GCGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 42
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 3 cut(s) 48, 126, 210
Lsp1109I GCAGC 2 cut(s) 50, 195
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 10
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 37, 242
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 137, 165
MseI TTAA 4 cut(s) 258, 269, 282, 307
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 2 cut(s) 35, 197
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 63, 247
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 10
PagI TCATGA 1 cut(s) 243
PinAI ACCGGT 1 cut(s) 34
PkrI GCNGC 2 cut(s) 65, 185
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 4 cut(s) 258, 269, 282, 307
SatI GCNGC 2 cut(s) 64, 184
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 59, 89, 129, 166
SfaNI GCATC 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 8, 228
SstI GAGCTC 1 cut(s) 59
TasI AATT 1 cut(s) 218
Tru1I TTAA 4 cut(s) 258, 269, 282, 307
Tru9I TTAA 4 cut(s) 258, 269, 282, 307
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 63, 183
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 3 cut(s) 196, 242, 252
TspRI CASTG 1 cut(s) 123
Vha464I CTTAAG 2 cut(s) 257, 281
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.