FvH4_4g17440

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003089
Physical Location & Seq
Forward (+)
21375699 .. 21376443
745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17440.t1

Sequence Viewer

Length: 309 bp
ATGGAGGCGGTAACAAAGATGGTATCTGAGAGACCAGTGGTGATCTTCAGTAAGAGCTCATGCTGCATTAGCTACTCTATCAAGACCTTGCTTTCTGACTTTGGGGTGAACCCGGCAGTGTATGAGCTTGATGAGATGCAAAGAGGGAGAGAAATAGAGCAAGCTCTGTTGAGGCTGGGATGCAGCCCATCTGTTCCGGCTGTGTTCATTGGTGGCGAATTTGTTGGCGGAGCCAATGAAATCATGAGTCTTCATCTTAAGCGCTCCTTGATCCCCATGCTTAAGCGCGTTGGTGCATTATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

7.72

Isoelectric Point (pI)

54.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 13 - 75 5.2e-14 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 288
AciI CCGC 2 cut(s) 8, 228
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 31
AfeI AGCGCT 1 cut(s) 263
AflII CTTAAG 2 cut(s) 257, 281
AluBI AGCT 4 cut(s) 57, 72, 127, 164
AluI AGCT 4 cut(s) 57, 72, 127, 164
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 265
Aor51HI AGCGCT 1 cut(s) 263
ApeKI GCWGC 2 cut(s) 63, 183
ApoI RAATTY 1 cut(s) 218
AspLEI GCGC 2 cut(s) 264, 288
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 52, 118
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 50, 195
BccI CCATC 2 cut(s) 13, 196
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 25
BfoI RGCGCY 1 cut(s) 265
BfrI CTTAAG 2 cut(s) 257, 281
BisI GCNGC 2 cut(s) 64, 184
BlsI GCNGC 2 cut(s) 65, 185
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 126, 170
BpiI GAAGAC 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 50, 195
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 113, 197
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 42, 270
BspACI CCGC 2 cut(s) 8, 228
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 265
BspTI CTTAAG 2 cut(s) 257, 281
BspTNI GGTCTC 1 cut(s) 25
BsrI ACTGG 1 cut(s) 35
BssMI GATC 2 cut(s) 42, 270
BstAFI CTTAAG 2 cut(s) 257, 281
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 264, 288
BstKTI GATC 2 cut(s) 45, 273
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 2 cut(s) 42, 270
BstMWI GCNNNNNNNGC 2 cut(s) 63, 69
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 50, 195
BstV2I GAAGAC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 185
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 42, 123
Cac8I GCNNGC 1 cut(s) 162
CciI TCATGA 1 cut(s) 243
CfoI GCGC 2 cut(s) 264, 288
CviAII CATG 3 cut(s) 60, 244, 277
CviJI RGCY 8 cut(s) 57, 72, 127, 164, 175, 186, 200, 233
CviKI_1 RGCY 8 cut(s) 57, 72, 127, 164, 175, 186, 200, 233
DdeI CTNAG 1 cut(s) 27
DpnI GATC 2 cut(s) 44, 272
DpnII GATC 2 cut(s) 42, 270
EciI GGCGGA 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 263
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 3 cut(s) 63, 247, 280
FaiI YATR 5 cut(s) 61, 123, 245, 278, 301
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FatI CATG 3 cut(s) 59, 243, 276
Fnu4HI GCNGC 2 cut(s) 64, 184
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 64, 184
GlaI GCGC 2 cut(s) 263, 287
GluI GCNGC 2 cut(s) 64, 184
GsaI CCCAGC 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 265
HapII CCGG 2 cut(s) 113, 197
HhaI GCGC 2 cut(s) 264, 288
Hin1II CATG 3 cut(s) 63, 247, 280
Hin6I GCGC 2 cut(s) 262, 286
HinP1I GCGC 2 cut(s) 262, 286
HinfI GANTC 1 cut(s) 247
HpaII CCGG 2 cut(s) 113, 197
HphI GGTGA 2 cut(s) 52, 118
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 28, 97
Hpy188III TCNNGA 2 cut(s) 82, 244
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 66, 139, 183, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 69
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 3 cut(s) 63, 247, 280
HspAI GCGC 2 cut(s) 262, 286
Kzo9I GATC 2 cut(s) 42, 270
LmnI GCTCC 2 cut(s) 230, 269
LpnPI CCDG 4 cut(s) 48, 126, 161, 210
Lsp1109I GCAGC 2 cut(s) 50, 195
LweI GCATC 2 cut(s) 126, 170
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 44, 272
MboI GATC 2 cut(s) 42, 270
MboII GAAGA 2 cut(s) 37, 242
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 218
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 2 cut(s) 137, 165
MseI TTAA 2 cut(s) 258, 282
MspCI CTTAAG 2 cut(s) 257, 281
MspI CCGG 2 cut(s) 113, 197
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 63, 69
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 42, 270
NlaIII CATG 3 cut(s) 63, 247, 280
NlaIV GGNNCC 1 cut(s) 232
PagI TCATGA 1 cut(s) 243
PkrI GCNGC 2 cut(s) 65, 185
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 232
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 2 cut(s) 258, 282
SatI GCNGC 2 cut(s) 64, 184
Sau3AI GATC 2 cut(s) 42, 270
SchI GAGTC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 59, 74, 89, 129, 166
SfaNI GCATC 2 cut(s) 126, 170
SmlI CTYRAG 2 cut(s) 257, 281
SmoI CTYRAG 2 cut(s) 257, 281
Sse9I AATT 1 cut(s) 218
SsiI CCGC 2 cut(s) 8, 228
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 111
TasI AATT 1 cut(s) 218
Tru1I TTAA 2 cut(s) 258, 282
Tru9I TTAA 2 cut(s) 258, 282
TscAI CASTG 2 cut(s) 42, 123
TseI GCWGC 2 cut(s) 63, 183
TspDTI ATGAA 3 cut(s) 196, 242, 252
TspRI CASTG 2 cut(s) 42, 123
Vha464I CTTAAG 2 cut(s) 257, 281
XapI RAATTY 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.