Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001962.1

Orthogroup ID

OG0003089

Physical Location & Seq

Genomic Coordinates Forward (+)

17697 .. 18005

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001962.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

atggaggcggtggcaaagatggtgtccgagagacctgtggtgatcttcagcaagaactcatgctgcatgagccactcaatcaagaccttgctttgcgactttggggtgaacccagcagtgtatgaactggatgagatgcaaagagggagagaaatagagcaagctctgttgaggctcggatgcaacccatcggtgccggctgtgttcattggtggcgaatttgttggtggagccaatgaagtcatgagtcttcatcttaagcgctccttaatccccatgcttaagcgcgtcggtgctttatgggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

102

Amino Acids

11.22

Weight (kDa)

7.69

Isoelectric Point (pI)

55.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18600
fragaria_vesca	FvH4_4g17440 FvH4_4g17471 FvH4_4g17490 FvH4_4g17491 FvH4_4g17500 FvH4_4g17501
malus_domestica	MD13G1172100.v1.1
prunus_persica	Prupe.1G140400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0421381 RchiOBHm_Chr4g0421391 RchiOBHm_Chr4g0421401 RchiOBHm_Chr4g0421411
rosa_laevigata	RLG00000007688 RLG00000007691
rosa_multiflora	Rmu_sc0001962.1_g000003 Rmu_sc0001962.1_g000004 Rmu_sc0001962.1_g000006 Rmu_sc0001962.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363660 Rroxscaffold_5G00363670
rosa_rugosa	Rorug04G0170600 Rorug04G0170700 Rorug04G0170800 Rorug04G0170800
rosa_samantha	Rh4AG231600 Rh4AG231700 Rh4BG234400 Rh4BG234600 Rh4CG245800 Rh4CG245900 Rh4CG246200 Rh4DG229900 Rh4DG230000
rosa_wichuraiana	Rw4G020240 Rw4G020250 Rw4G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	1 cut(s)	288
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	31
AfeI	AGCGCT	1 cut(s)	263
AflII	CTTAAG	2 cut(s)	257, 281
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	25
Aor51HI	AGCGCT	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	218
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	264, 288
AsuHPI	GGTGA	2 cut(s)	52, 118
BanI	GGYRCC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	13, 196
BcoDI	GTCTC	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	265
BfrI	CTTAAG	2 cut(s)	257, 281
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	195, 232
BmsI	GCATC	2 cut(s)	126, 170
BpiI	GAAGAC	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	132
BseGI	GGATG	2 cut(s)	136, 185
BseNI	ACTGG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	112
Bsh1236I	CGCG	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	8
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	195, 232
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	2 cut(s)	257, 281
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	1 cut(s)	42
BstAFI	CTTAAG	2 cut(s)	257, 281
BstC8I	GCNNGC	2 cut(s)	162, 198
BstF5I	GGATG	2 cut(s)	136, 185
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 288
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	136, 185
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	162, 198
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	2 cut(s)	264, 288
Cfr10I	RCCGGY	1 cut(s)	196
CseI	GACGC	1 cut(s)	277
CviAII	CATG	4 cut(s)	60, 67, 244, 277
CviJI	RGCY	5 cut(s)	72, 164, 175, 200, 233
CviKI_1	RGCY	5 cut(s)	72, 164, 175, 200, 233
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	31
FaeI	CATG	4 cut(s)	63, 70, 247, 280
FaiI	YATR	6 cut(s)	61, 68, 123, 245, 278, 301
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	4 cut(s)	59, 66, 243, 276
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	2 cut(s)	143, 192
Fsp4HI	GCNGC	1 cut(s)	64
GlaI	GCGC	2 cut(s)	263, 287
GluI	GCNGC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	265
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	2 cut(s)	264, 288
Hin1II	CATG	4 cut(s)	63, 70, 247, 280
Hin6I	GCGC	2 cut(s)	262, 286
HinP1I	GCGC	2 cut(s)	262, 286
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	2 cut(s)	52, 118
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	28, 179
Hpy188III	TCNNGA	2 cut(s)	82, 244
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	66, 139, 183
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	63, 70, 247, 280
HspAI	GCGC	2 cut(s)	262, 286
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	230, 269
LpnPI	CCDG	4 cut(s)	48, 113, 126, 210
Lsp1109I	GCAGC	1 cut(s)	50
LweI	GCATC	2 cut(s)	126, 170
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	37, 242
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	2 cut(s)	137, 165
MroNI	GCCGGC	1 cut(s)	196
MseI	TTAA	3 cut(s)	258, 269, 282
MspCI	CTTAAG	2 cut(s)	257, 281
MspI	CCGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	69
NaeI	GCCGGC	1 cut(s)	198
NdeII	GATC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	196
NlaIII	CATG	4 cut(s)	63, 70, 247, 280
NlaIV	GGNNCC	2 cut(s)	195, 232
PagI	TCATGA	1 cut(s)	243
PdiI	GCCGGC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	195, 232
SaqAI	TTAA	3 cut(s)	258, 269, 282
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	256
SetI	ASST	3 cut(s)	37, 89, 166
SfaNI	GCATC	2 cut(s)	126, 170
SmlI	CTYRAG	2 cut(s)	257, 281
SmoI	CTYRAG	2 cut(s)	257, 281
Sse9I	AATT	1 cut(s)	218
SsiI	CCGC	1 cut(s)	8
TasI	AATT	1 cut(s)	218
Tru1I	TTAA	3 cut(s)	258, 269, 282
Tru9I	TTAA	3 cut(s)	258, 269, 282
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	4 cut(s)	138, 196, 242, 252
TspRI	CASTG	1 cut(s)	123
Vha464I	CTTAAG	2 cut(s)	257, 281
XapI	RAATTY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.