Rw4G020250

Monothiol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003089
Physical Location & Seq
Reverse (-)
44002840 .. 44008266
5427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G020250.1

Sequence Viewer

Length: 243 bp
ATGAGCCACTCAATCAAGACCTTGCTTTGCGACTTTGGGGTGAACCCAGCAGTGTATGAACTGGATGAGATGCAAAGAGGGAGAGAAATAGAGCAAGCTCTGTTGAGGCTCGGATGCAACCCATCGGTGCCGGCTGTGTTCATTGGTGGCGAATTTGTTGGTGGAGCCAATGAAGTCATGAGTCTTCATCTTAAGCGCTCCTTAATTCCCATGCTTAAGCGCGTGGGCGCATTATGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

80

Amino Acids

8.81

Weight (kDa)

6.71

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 2 - 53 3.2e-09 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccII CGCG 1 cut(s) 222
AcsI RAATTY 1 cut(s) 152
AfeI AGCGCT 1 cut(s) 197
AflII CTTAAG 2 cut(s) 191, 215
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 197
ApoI RAATTY 1 cut(s) 152
AspLEI GCGC 3 cut(s) 198, 222, 230
AsuHPI GGTGA 1 cut(s) 52
BanI GGYRCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 176
BccI CCATC 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 199
BfrI CTTAAG 2 cut(s) 191, 215
BmiI GGNNCC 2 cut(s) 129, 166
BmsI GCATC 2 cut(s) 60, 104
BpiI GAAGAC 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 70, 119
BseNI ACTGG 1 cut(s) 66
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 131
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 129, 166
BspT107I GGYRCC 1 cut(s) 127
BspTI CTTAAG 2 cut(s) 191, 215
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 130
BstAFI CTTAAG 2 cut(s) 191, 215
BstC8I GCNNGC 2 cut(s) 96, 132
BstF5I GGATG 2 cut(s) 70, 119
BstFNI CGCG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 3 cut(s) 198, 222, 230
BstUI CGCG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 70, 119
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 96, 132
CciI TCATGA 1 cut(s) 177
CfoI GCGC 3 cut(s) 198, 222, 230
Cfr10I RCCGGY 1 cut(s) 130
CviAII CATG 2 cut(s) 178, 211
CviJI RGCY 5 cut(s) 6, 98, 109, 134, 167
CviKI_1 RGCY 5 cut(s) 6, 98, 109, 134, 167
Eco47III AGCGCT 1 cut(s) 197
FaeI CATG 2 cut(s) 181, 214
FaiI YATR 4 cut(s) 57, 179, 212, 235
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 2 cut(s) 177, 210
FokI GGATG 2 cut(s) 77, 126
GlaI GCGC 3 cut(s) 197, 221, 229
GsaI CCCAGC 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 199
HapII CCGG 1 cut(s) 131
HhaI GCGC 3 cut(s) 198, 222, 230
Hin1II CATG 2 cut(s) 181, 214
Hin6I GCGC 3 cut(s) 196, 220, 228
HinP1I GCGC 3 cut(s) 196, 220, 228
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 16, 178
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 73, 117
Hsp92II CATG 2 cut(s) 181, 214
HspAI GCGC 3 cut(s) 196, 220, 228
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 164, 203
LpnPI CCDG 3 cut(s) 47, 60, 144
LweI GCATC 2 cut(s) 60, 104
MboII GAAGA 1 cut(s) 176
MluCI AATT 2 cut(s) 152, 204
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 2 cut(s) 71, 99
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 3 cut(s) 192, 203, 216
MspCI CTTAAG 2 cut(s) 191, 215
MspI CCGG 1 cut(s) 131
MvnI CGCG 1 cut(s) 222
NaeI GCCGGC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 181, 214
NlaIV GGNNCC 2 cut(s) 129, 166
PagI TCATGA 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 129, 166
SaqAI TTAA 3 cut(s) 192, 203, 216
SchI GAGTC 1 cut(s) 190
SetI ASST 2 cut(s) 23, 100
SfaNI GCATC 2 cut(s) 60, 104
SmlI CTYRAG 2 cut(s) 191, 215
SmoI CTYRAG 2 cut(s) 191, 215
Sse9I AATT 2 cut(s) 152, 204
TasI AATT 2 cut(s) 152, 204
Tru1I TTAA 3 cut(s) 192, 203, 216
Tru9I TTAA 3 cut(s) 192, 203, 216
TscAI CASTG 1 cut(s) 57
TspDTI ATGAA 4 cut(s) 72, 130, 176, 186
TspRI CASTG 1 cut(s) 57
Vha464I CTTAAG 2 cut(s) 191, 215
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.