Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Reverse (-)

6727342 .. 6730407

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAACGATCAATCTAAGCTGATGAATCCGCCACCTCCACAGCAGATGATTGGTCAGCCTCCACCGCAACAGAGGATGAATCCGCCGCCGCCGTCACAGGTACCACGGATTATGAACCAGAGTCCGTTATTAGGCCAATCTCATCCGATTATGGGAATGAATCAGCAGCCACCACAGGTTATGATGAACAGCAATCAGCCAATGATGATGAATCCACGCAACTTTAACCTTAACCAGAGTTTGAGTTCCGAGTATCAGCAGAATCTTGCTCCTAATAACTTTGGTTCGAAAATGAGTCGGAACAATTGGAAAGGGAAGAAGATTACAAGTGACAAGAGGCCAATGATGGAGCAGCAGCAGCAGCAAATTAGGAGGATGCATAACTCTGGGATTCCTATGTATAACCCTCAGCAACTTCCTGGTTCTGGTAGTATTCAGGTTGGTGCTGGTGGTTACAAGCCGCCGACTTTGAATGAGCTGCAGTCTCAGAATAGGTTAAAGACGAGGAAGTTTTATCCGAAGAAGAAGTATGGTAACCGATATGTTCCTTATGCGCCGAGGAACACGACTTCGTTTATTATCAGGGCGAAGAAATCTGGTGGAATTGCTGAGTTGGTGTCTCCATGCCCTGTGACACCGGCGGTGTTGCCTACGCCAATGTTCTCGCCGTCTAGGGAGGTGTTGGGTGATATGGCGAAGGAGGAGTGGGGGGTTGATGGTTATGGCTCTATGAAAGGGCTGATTAGGCTGAGAGCTGATGGGAATGAGTTGGAACCTTATGAGGAGGATGATGAAGATGAAGGAGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTTGAGGTTGAGAGGAGATTGGATCATGATTTGAGTCGGTTTGAGATGATTTATCCGAATTATGGTGGTTCTGAGTATAACAATGTTTTGGAAAACCGAGTGGATGATCAGGATAGCCATATTGCTCAACTGGAGGAAGAGAATTTAACTTTGAAGGAAAGGTTGTTTTTGATGGAAAGGGAGTTAGGTGACATGAGGAGAAGATTACAGTATCTCGAGAGGCGGGATATGGTTGCTCAAGATGCTAACGAGGAGGTTGTGGAGAATGAGTCTGAAAGTGATGGTGATGATACAGGGGGATCTGATGCTCGTACTAGTGGTGAAACAAAGGAGAACCATGTAGCTGCAGAAGATGTTTGTATGCAGGATGTTGCGGCAAGGGATAATGAGGCTGTGGTGAAGGAAAACAACAATAACAGCAAGAGCGTGGATGAAGTGAAAGCGAACAAACAATCGGTTGGTGTGGGAAGTTCTGGGGAAAGTAAACCTGAAGGTAAGGAAAAAGCTGAGACAGAGTTTCGGGAAGTTTCAGGGGAACAATGTGAGGAAGACAACCAAGGTGTGGTTGGTATGGATCAAAGTAAGGAAAATGAAATGGCAATTGAGAAGCTTGAAGATGCGTCTGAGAATGATTCTGCTGGAAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

494

Amino Acids

55.52

Weight (kDa)

4.84

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	1396
AciI	CCGC	9 cut(s)	29, 65, 83, 86, 89, 461, 641, 1057, 1208
AclWI	GGATC	3 cut(s)	864, 1141, 1416
AcsI	RAATTY	1 cut(s)	976
AcuI	CTGAAG	1 cut(s)	1344
AfaI	GTAC	2 cut(s)	102, 1147
AfiI	CCNNNNNNNGG	5 cut(s)	131, 152, 425, 896, 1396
AgsI	TTSAA	3 cut(s)	472, 988, 1448
AhlI	ACTAGT	1 cut(s)	1148
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	6 cut(s)	19, 478, 755, 1178, 1340, 1444
AluI	AGCT	6 cut(s)	19, 478, 755, 1178, 1340, 1444
Alw26I	GTCTC	3 cut(s)	489, 624, 1337
AlwI	GGATC	3 cut(s)	864, 1141, 1416
Ama87I	CYCGRG	1 cut(s)	1049
AoxI	GGCC	2 cut(s)	133, 338
ApeKI	GCWGC	7 cut(s)	166, 352, 355, 358, 361, 478, 1178
ApoI	RAATTY	1 cut(s)	976
Asp718I	GGTACC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	556
AsuHPI	GGTGA	5 cut(s)	698, 1034, 1130, 1166, 1243
AsuII	TTCGAA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	1049
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	1389
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	7 cut(s)	178, 364, 367, 370, 373, 465, 1165
BccI	CCATC	5 cut(s)	340, 710, 752, 1000, 1109
BceAI	ACGGC	2 cut(s)	76, 652
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	940
BcoDI	GTCTC	3 cut(s)	489, 624, 1337
BcuI	ACTAGT	1 cut(s)	1148
BfaI	CTAG	2 cut(s)	672, 1149
BfmI	CTRYAG	2 cut(s)	479, 1179
Bme1390I	CCNGG	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	1049
BmiI	GGNNCC	2 cut(s)	102, 774
BmrFI	CCNGG	1 cut(s)	420
BmsI	GCATC	4 cut(s)	366, 1066, 1129, 1441
BpiI	GAAGAC	1 cut(s)	1389
BpmI	CTGGAG	1 cut(s)	986
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	1056
BsaJI	CCNNGG	3 cut(s)	104, 557, 1390
BsaXI	ACNNNNNCTCC	2 cut(s)	1088, 1118
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 152, 425, 896, 1396
Bse118I	RCCGGY	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	104, 557, 1390
BseGI	GGATG	7 cut(s)	81, 142, 381, 793, 943, 1207, 1270
BseLI	CCNNNNNNNGG	5 cut(s)	131, 152, 425, 896, 1396
BseMII	CTCAG	7 cut(s)	422, 500, 600, 740, 897, 1332, 1449
BseNI	ACTGG	1 cut(s)	969
BseRI	GAGGAG	6 cut(s)	716, 797, 842, 862, 1045, 1100
BseXI	GCAGC	7 cut(s)	178, 364, 367, 370, 373, 465, 1165
BshFI	GGCC	2 cut(s)	135, 340
BshNI	GGYRCC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	1049
BsiSI	CCGG	1 cut(s)	638
BslI	CCNNNNNNNGG	5 cut(s)	131, 152, 425, 896, 1396
BsmAI	GTCTC	3 cut(s)	489, 624, 1337
BsnI	GGCC	2 cut(s)	135, 340
BsoBI	CYCGRG	1 cut(s)	1049
Bsp119I	TTCGAA	1 cut(s)	287
Bsp143I	GATC	5 cut(s)	7, 856, 940, 1133, 1408
BspACI	CCGC	9 cut(s)	29, 65, 83, 86, 89, 461, 641, 1057, 1208
BspANI	GGCC	2 cut(s)	135, 340
BspCNI	CTCAG	7 cut(s)	421, 499, 601, 741, 898, 1333, 1450
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	2 cut(s)	102, 774
BspMAI	CTGCAG	2 cut(s)	483, 1183
BspPI	GGATC	3 cut(s)	864, 1141, 1416
BspT104I	TTCGAA	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	969
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	3 cut(s)	104, 557, 1390
BssMI	GATC	5 cut(s)	7, 856, 940, 1133, 1408
BssT1I	CCWWGG	1 cut(s)	1390
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	1 cut(s)	1044
Bst6I	CTCTTC	1 cut(s)	966
BstBI	TTCGAA	1 cut(s)	287
BstDEI	CTNAG	8 cut(s)	15, 408, 486, 609, 749, 906, 1341, 1458
BstDSI	CCRYGG	1 cut(s)	104
BstEII	GGTNACC	1 cut(s)	533
BstF5I	GGATG	7 cut(s)	81, 142, 381, 793, 943, 1207, 1270
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	5 cut(s)	10, 859, 943, 1136, 1411
BstMAI	GTCTC	3 cut(s)	489, 624, 1337
BstMBI	GATC	5 cut(s)	7, 856, 940, 1133, 1408
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 358, 361, 745, 1076
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	836
BstPI	GGTNACC	1 cut(s)	533
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	479, 1179
BstV1I	GCAGC	7 cut(s)	178, 364, 367, 370, 373, 465, 1165
BstV2I	GAAGAC	1 cut(s)	1389
BstX2I	RGATCY	1 cut(s)	1133
BstYI	RGATCY	1 cut(s)	1133
BsuRI	GGCC	2 cut(s)	135, 340
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	7 cut(s)	81, 142, 381, 793, 943, 1207, 1270
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	637
CseI	GACGC	1 cut(s)	1443
Csp6I	GTAC	2 cut(s)	101, 1146
CviAII	CATG	5 cut(s)	624, 833, 860, 1027, 1172
CviQI	GTAC	2 cut(s)	101, 1146
DdeI	CTNAG	8 cut(s)	15, 408, 486, 609, 749, 906, 1341, 1458
DpnI	GATC	5 cut(s)	9, 858, 942, 1135, 1410
DpnII	GATC	5 cut(s)	7, 856, 940, 1133, 1408
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
EciI	GGCGGA	2 cut(s)	18, 72
Eco130I	CCWWGG	1 cut(s)	1390
Eco57I	CTGAAG	1 cut(s)	1344
Eco88I	CYCGRG	1 cut(s)	1049
Eco91I	GGTNACC	1 cut(s)	533
EcoO65I	GGTNACC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	1390
EcoT22I	ATGCAT	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	1390
FaeI	CATG	5 cut(s)	627, 836, 863, 1030, 1175
FatI	CATG	5 cut(s)	623, 832, 859, 1026, 1171
FauI	CCCGC	1 cut(s)	1050
FbaI	TGATCA	1 cut(s)	940
FokI	GGATG	7 cut(s)	88, 129, 388, 800, 950, 1214, 1277
FspBI	CTAG	2 cut(s)	672, 1149
GlaI	GCGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	986
HaeIII	GGCC	2 cut(s)	135, 340
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	1 cut(s)	1443
HhaI	GCGC	1 cut(s)	556
Hin1II	CATG	5 cut(s)	627, 836, 863, 1030, 1175
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HindIII	AAGCTT	1 cut(s)	1442
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	5 cut(s)	698, 1034, 1130, 1166, 1243
Hpy166II	GTNNAC	1 cut(s)	1319
Hpy188III	TCNNGA	6 cut(s)	860, 944, 1049, 1051, 1073, 1355
Hpy8I	GTNNAC	1 cut(s)	1319
HpyAV	CCTTC	5 cut(s)	691, 794, 982, 1228, 1319
HpyCH4III	ACNGT	1 cut(s)	1044
HpyCH4V	TGCA	4 cut(s)	379, 481, 1181, 1198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 358, 361, 745, 1076
HpyF3I	CTNAG	8 cut(s)	15, 408, 486, 609, 749, 906, 1341, 1458
Hsp92II	CATG	5 cut(s)	627, 836, 863, 1030, 1175
HspAI	GCGC	1 cut(s)	554
KpnI	GGTACC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	940
Kzo9I	GATC	5 cut(s)	7, 856, 940, 1133, 1408
LmnI	GCTCC	3 cut(s)	274, 349, 829
Lsp1109I	GCAGC	7 cut(s)	178, 364, 367, 370, 373, 465, 1165
LweI	GCATC	4 cut(s)	366, 1066, 1129, 1441
MaeI	CTAG	2 cut(s)	672, 1149
MaeIII	GTNAC	6 cut(s)	93, 329, 452, 533, 631, 1022
MalI	GATC	5 cut(s)	9, 858, 942, 1135, 1410
MboI	GATC	5 cut(s)	7, 856, 940, 1133, 1408
MfeI	CAATTG	2 cut(s)	304, 1434
MflI	RGATCY	1 cut(s)	1133
MluCI	AATT	6 cut(s)	304, 366, 603, 892, 976, 1434
MlyI	GAGTC	4 cut(s)	130, 304, 877, 1112
MmeI	TCCRAC	2 cut(s)	278, 750
Mph1103I	ATGCAT	1 cut(s)	381
MseI	TTAA	4 cut(s)	225, 231, 497, 980
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	2 cut(s)	304, 1434
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	5 cut(s)	64, 358, 361, 745, 1076
NdeII	GATC	5 cut(s)	7, 856, 940, 1133, 1408
NlaIII	CATG	5 cut(s)	627, 836, 863, 1030, 1175
NlaIV	GGNNCC	2 cut(s)	102, 774
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	4 cut(s)	93, 329, 631, 1022
NsiI	ATGCAT	1 cut(s)	381
NspI	RCATGY	1 cut(s)	836
NspV	TTCGAA	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	1049
PagI	TCATGA	1 cut(s)	859
PfeI	GAWTC	7 cut(s)	25, 79, 160, 211, 262, 391, 1466
PflMI	CCANNNNNTGG	1 cut(s)	1396
PleI	GAGTC	4 cut(s)	129, 303, 876, 1111
PpsI	GAGTC	4 cut(s)	129, 303, 876, 1111
Psp6I	CCWGG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	102, 774
PstI	CTGCAG	2 cut(s)	483, 1183
PsuI	RGATCY	1 cut(s)	1133
RsaI	GTAC	2 cut(s)	102, 1147
RsaNI	GTAC	2 cut(s)	101, 1146
SaqAI	TTAA	4 cut(s)	225, 231, 497, 980
Sau3AI	GATC	5 cut(s)	7, 856, 940, 1133, 1408
SchI	GAGTC	4 cut(s)	130, 304, 877, 1112
ScrFI	CCNGG	1 cut(s)	420
SfaNI	GCATC	4 cut(s)	366, 1066, 1129, 1441
SfcI	CTRYAG	2 cut(s)	479, 1179
Sfr274I	CTCGAG	1 cut(s)	1049
SfuI	TTCGAA	1 cut(s)	287
SgrAI	CRCCGGYG	1 cut(s)	637
SlaI	CTCGAG	1 cut(s)	1049
SmlI	CTYRAG	2 cut(s)	1049, 1071
SmoI	CTYRAG	2 cut(s)	1049, 1071
SpeI	ACTAGT	1 cut(s)	1148
Sse9I	AATT	6 cut(s)	304, 366, 603, 892, 976, 1434
SsiI	CCGC	9 cut(s)	29, 65, 83, 86, 89, 461, 641, 1057, 1208
SspMI	CTAG	2 cut(s)	672, 1149
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	1390
TaaI	ACNGT	1 cut(s)	1044
TaqI	TCGA	3 cut(s)	287, 809, 1050
TasI	AATT	6 cut(s)	304, 366, 603, 892, 976, 1434
TauI	GCSGC	4 cut(s)	88, 91, 463, 1211
TfiI	GAWTC	7 cut(s)	25, 79, 160, 211, 262, 391, 1466
Tru1I	TTAA	4 cut(s)	225, 231, 497, 980
Tru9I	TTAA	4 cut(s)	225, 231, 497, 980
TseFI	GTSAC	4 cut(s)	93, 329, 631, 1022
TseI	GCWGC	7 cut(s)	166, 352, 355, 358, 361, 478, 1178
Tsp45I	GTSAC	4 cut(s)	93, 329, 631, 1022
TspGWI	ACGGA	2 cut(s)	114, 121
Van91I	CCANNNNNTGG	1 cut(s)	1396
XapI	RAATTY	1 cut(s)	976
XceI	RCATGY	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1397
XhoI	CTCGAG	1 cut(s)	1049
XspI	CTAG	2 cut(s)	672, 1149
Zsp2I	ATGCAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.