Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Reverse (-)

878489 .. 879961

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g01120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGAACGATCAGTCACAGCTGATGAATCAAGCGCCACCGATGATGAGTTTGAGCCAAGCTCAAGTGATGAGCCAGCCGCCCCCGCAGATGATGAGTCAGACGCTGCAGCAGATGATGGCGCCGTCTTCTCAATCCCTGGCGGTTCAGCAGCAACAGCAGCAGCAGCAATCTCAGTTGATGATGATGAAGAGTCAGTCTCAGCCTATGATGATGAATCGGAACTACAAGGCTTGGCCTCAGCCGCAGCCTCAGTTCGCCGCCCAAAAGCCGCCGCCGTCGAATGTTGGACGCAACAATTGGAAGGGAAAGAAAGGCGGAGATAAGAGGAGAATGGACAAGAATGTCCCCAATTTGCCATTGAGTGGTCAGACAAGCGGAGGAGGAGGAGGAGGTGGAGGAGGAGGATACATACCCCCGACGCTTCATGAGTTACAGTCTCAGAATCGAATGAAAGCCCGGAAATTTTATCCGAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACATCGTATATTATTCGTGCGAAGAAGGCCGGCGGTATAGCCTCACTAGTTTCGCCTTATCCGGTGACTCCGGCTGTTCTGCCCACACCCATGTTCTCGCCTTCGCGGGAAGTCTTGGGGGATATGGCGAAAGAGGAGTGGGGTGTTGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCGCCTGGAAATGATGATGATGAGGGTGGTGGTGGATCGAGCGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGTAGGTTTGAGATGGTGTACCCGAATTACAGTGGGGTTGAGTATAACAATGCTTTGGAGAATAGAGTGGATGATCAGGATACGCATATAGCTCAATTGGAGGAGGAGAATCTGACATTGAAGGAGAGGCTTTTCTTGATGGAGAGGGAGTTGGCGGATTTGAGGAGGCGGATGCAGTTCATTGAGAGGAGGTGCCATGTGATGGGGGATGTCAATGAAGAGGTGGTGGAAAATGCATTTGAAAATGATAGTGATGGAGGGTCGGACGCGCCCCATATGGGTATGGAGGGTGAGAACAATCCTGAGATGGTAGATTATGTGTTGAGAGATGGAGGAAGTAGAAGTGTTGGCGCATTGGCCGAGAATGAAAGTGCTAGGGATGTAGATGTAGGTATGGAAGAATATGTACCCAATGAAATGATTCTAAAGGAAAATGAGGTGAAAGATGAAACAAGAAATGAGTTTGTAGGTAACGAAGAGATTGAGGAATTTAAGAGCGAGCTTACTCCAGAAAAAGTAATTGGAAATAAAAATGAGGTTGAAGATAAGATGGTGAAAGATGAAGTTGAGATCAAGAATGAGACTGAGATAATGCAGGGTGAGATGAATGCAAAGAAGGATGAGGAAATGGGAATTGCGTGCCTGGAGAAGAGCATTGGCGACGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

491

Amino Acids

54.94

Weight (kDa)

4.84

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
AccB1I	GGYRCC	2 cut(s)	118, 993
AccB7I	CCANNNNNTGG	2 cut(s)	362, 1003
AccII	CGCG	2 cut(s)	625, 1070
AclWI	GGATC	1 cut(s)	748
AcoI	YGGCCR	1 cut(s)	1158
AcsI	RAATTY	2 cut(s)	461, 1289
AcyI	GRCGYC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	821, 1209
AfiI	CCNNNNNNNGG	3 cut(s)	362, 1003, 1079
AgsI	TTSAA	3 cut(s)	922, 1043, 1343
AhlI	ACTAGT	1 cut(s)	565
AjnI	CCWGG	3 cut(s)	135, 709, 1443
AjuI	GAANNNNNNNTTGG	2 cut(s)	1305, 1337
AluBI	AGCT	4 cut(s)	19, 59, 893, 1303
AluI	AGCT	4 cut(s)	19, 59, 893, 1303
Alw26I	GTCTC	3 cut(s)	201, 441, 1376
AlwI	GGATC	1 cut(s)	748
AlwNI	CAGNNNCTG	1 cut(s)	103
AoxI	GGCC	3 cut(s)	233, 546, 1158
ApeKI	GCWGC	7 cut(s)	103, 106, 148, 157, 160, 163, 244
ApoI	RAATTY	2 cut(s)	461, 1289
Asp700I	GAANNNNTTC	1 cut(s)	1221
AspLEI	GCGC	5 cut(s)	34, 121, 499, 1072, 1154
AspS9I	GGNCC	1 cut(s)	790
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	5 cut(s)	595, 1103, 1252, 1366, 1412
AvaII	GGWCC	1 cut(s)	790
BanI	GGYRCC	2 cut(s)	118, 993
BarI	GAAGNNNNNNTAC	2 cut(s)	1191, 1223
BbsI	GAAGAC	1 cut(s)	117
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	7 cut(s)	90, 118, 160, 169, 172, 175, 256
BccI	CCATC	9 cut(s)	109, 662, 808, 934, 997, 1049, 1102, 1124, 1345
BceAI	ACGGC	2 cut(s)	106, 259
BciT130I	CCWGG	3 cut(s)	137, 711, 1445
BciVI	GTATCC	2 cut(s)	398, 874
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	201, 441, 1376
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	2 cut(s)	566, 1176
BfmI	CTRYAG	1 cut(s)	104
BfoI	RGCGCY	2 cut(s)	35, 122
BfuI	GTATCC	2 cut(s)	398, 874
Bme1390I	CCNGG	4 cut(s)	137, 457, 711, 1445
Bme18I	GGWCC	1 cut(s)	790
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	2 cut(s)	120, 995
BmrFI	CCNGG	4 cut(s)	137, 457, 711, 1445
BmsI	GCATC	1 cut(s)	963
BpiI	GAAGAC	1 cut(s)	117
BplI	GAGNNNNNCTC	4 cut(s)	43, 75, 181, 213
BpmI	CTGGAG	2 cut(s)	1293, 1466
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	457
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	135, 509
BsaWI	WCCGGW	1 cut(s)	580
BsaXI	ACNNNNNCTCC	4 cut(s)	770, 800, 935, 965
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 1003, 1079
Bse118I	RCCGGY	1 cut(s)	548
BseBI	CCWGG	3 cut(s)	137, 711, 1445
BseDI	CCNNGG	2 cut(s)	135, 509
BseGI	GGATG	5 cut(s)	877, 978, 1015, 1186, 1426
BseLI	CCNNNNNNNGG	3 cut(s)	362, 1003, 1079
BseMII	CTCAG	7 cut(s)	185, 212, 251, 263, 452, 1095, 1377
BseXI	GCAGC	7 cut(s)	90, 118, 160, 169, 172, 175, 256
Bsh1236I	CGCG	2 cut(s)	625, 1070
Bsh1285I	CGRYCG	1 cut(s)	707
BshFI	GGCC	3 cut(s)	235, 548, 1160
BshNI	GGYRCC	2 cut(s)	118, 993
BsiEI	CGRYCG	1 cut(s)	707
BsiSI	CCGG	4 cut(s)	457, 549, 581, 590
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	362, 1003, 1079
BsmAI	GTCTC	3 cut(s)	201, 441, 1376
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	1 cut(s)	1414
BsnI	GGCC	3 cut(s)	235, 548, 1160
Bsp143I	GATC	4 cut(s)	7, 740, 874, 1371
BspANI	GGCC	3 cut(s)	235, 548, 1160
BspCNI	CTCAG	7 cut(s)	184, 211, 250, 262, 451, 1096, 1378
BspFNI	CGCG	2 cut(s)	625, 1070
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	120, 995
BspMAI	CTGCAG	1 cut(s)	108
BspPI	GGATC	1 cut(s)	748
BspQI	GCTCTTC	1 cut(s)	1445
BspT107I	GGYRCC	2 cut(s)	118, 993
BsrFI	RCCGGY	1 cut(s)	548
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	135, 509
BssMI	GATC	4 cut(s)	7, 740, 874, 1371
BssNI	GRCGYC	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	3 cut(s)	137, 711, 1445
Bst4CI	ACNGT	3 cut(s)	435, 833, 1466
Bst6I	CTCTTC	4 cut(s)	182, 1014, 1272, 1445
BstACI	GRCGYC	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	74, 550, 1301, 1441
BstDEI	CTNAG	7 cut(s)	171, 198, 237, 249, 438, 1104, 1386
BstF5I	GGATG	5 cut(s)	877, 978, 1015, 1186, 1426
BstFNI	CGCG	2 cut(s)	625, 1070
BstH2I	RGCGCY	2 cut(s)	35, 122
BstHHI	GCGC	5 cut(s)	34, 121, 499, 1072, 1154
BstKTI	GATC	4 cut(s)	10, 743, 877, 1374
BstMAI	GTCTC	3 cut(s)	201, 441, 1376
BstMBI	GATC	4 cut(s)	7, 740, 874, 1371
BstMCI	CGRYCG	1 cut(s)	707
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 154, 157, 163, 241, 503, 545, 706
BstNI	CCWGG	3 cut(s)	137, 711, 1445
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	4 cut(s)	135, 455, 709, 1443
BstSFI	CTRYAG	1 cut(s)	104
BstUI	CGCG	2 cut(s)	625, 1070
BstV1I	GCAGC	7 cut(s)	90, 118, 160, 169, 172, 175, 256
BstV2I	GAAGAC	1 cut(s)	117
BsuI	GTATCC	2 cut(s)	398, 874
BsuRI	GGCC	3 cut(s)	235, 548, 1160
BtsCI	GGATG	5 cut(s)	877, 978, 1015, 1186, 1426
BtsIMutI	CAGTG	1 cut(s)	838
Cac8I	GCNNGC	4 cut(s)	74, 550, 1301, 1441
CaiI	CAGNNNCTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	5 cut(s)	34, 121, 499, 1072, 1154
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	790
CseI	GACGC	4 cut(s)	109, 297, 427, 1076
Csp6I	GTAC	2 cut(s)	820, 1208
CviAII	CATG	5 cut(s)	425, 610, 767, 794, 998
CviQI	GTAC	2 cut(s)	820, 1208
DdeI	CTNAG	7 cut(s)	171, 198, 237, 249, 438, 1104, 1386
DinI	GGCGCC	1 cut(s)	120
DpnI	GATC	4 cut(s)	9, 742, 876, 1373
DpnII	GATC	4 cut(s)	7, 740, 874, 1371
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	1158
Eam1104I	CTCTTC	4 cut(s)	182, 1014, 1272, 1445
EarI	CTCTTC	4 cut(s)	182, 1014, 1272, 1445
EciI	GGCGGA	3 cut(s)	330, 971, 985
Eco130I	CCWWGG	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	790
EcoRII	CCWGG	3 cut(s)	135, 709, 1443
EcoT14I	CCWWGG	1 cut(s)	509
EcoT22I	ATGCAT	1 cut(s)	1039
EgeI	GGCGCC	1 cut(s)	120
EheI	GGCGCC	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	5 cut(s)	428, 613, 770, 797, 1001
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	5 cut(s)	424, 609, 766, 793, 997
FauI	CCCGC	2 cut(s)	90, 618
FauNDI	CATATG	1 cut(s)	1077
FbaI	TGATCA	1 cut(s)	874
FokI	GGATG	5 cut(s)	884, 985, 1022, 1193, 1433
FspBI	CTAG	2 cut(s)	566, 1176
GlaI	GCGC	5 cut(s)	33, 120, 498, 1071, 1153
GsuI	CTGGAG	2 cut(s)	1293, 1466
HaeII	RGCGCY	2 cut(s)	35, 122
HaeIII	GGCC	3 cut(s)	235, 548, 1160
HapII	CCGG	4 cut(s)	457, 549, 581, 590
HgaI	GACGC	4 cut(s)	109, 297, 427, 1076
HhaI	GCGC	5 cut(s)	34, 121, 499, 1072, 1154
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	5 cut(s)	428, 613, 770, 797, 1001
Hin6I	GCGC	5 cut(s)	32, 119, 497, 1070, 1152
HinP1I	GCGC	5 cut(s)	32, 119, 497, 1070, 1152
HinfI	GANTC	9 cut(s)	25, 94, 190, 214, 442, 586, 694, 910, 1222
HpaII	CCGG	4 cut(s)	457, 549, 581, 590
HphI	GGTGA	5 cut(s)	595, 1103, 1252, 1366, 1412
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	7 cut(s)	99, 219, 369, 441, 471, 915, 1066
Hpy188III	TCNNGA	6 cut(s)	425, 878, 937, 1103, 1310, 1375
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	3 cut(s)	280, 421, 1466
HpyAV	CCTTC	5 cut(s)	295, 538, 630, 916, 1411
HpyCH4III	ACNGT	3 cut(s)	435, 833, 1466
HpyCH4V	TGCA	5 cut(s)	106, 976, 1037, 1396, 1412
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 154, 157, 163, 241, 503, 545, 706
HpyF3I	CTNAG	7 cut(s)	171, 198, 237, 249, 438, 1104, 1386
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	5 cut(s)	428, 613, 770, 797, 1001
HspAI	GCGC	5 cut(s)	32, 119, 497, 1070, 1152
KasI	GGCGCC	1 cut(s)	118
KroI	GCCGGC	1 cut(s)	548
KroNI	GCCGGC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	7, 740, 874, 1371
LguI	GCTCTTC	1 cut(s)	1445
LmnI	GCTCC	1 cut(s)	763
Lsp1109I	GCAGC	7 cut(s)	90, 118, 160, 169, 172, 175, 256
LweI	GCATC	1 cut(s)	963
MaeI	CTAG	2 cut(s)	566, 1176
MaeIII	GTNAC	5 cut(s)	12, 429, 583, 1271, 1466
MalI	GATC	4 cut(s)	9, 742, 876, 1373
MboI	GATC	4 cut(s)	7, 740, 874, 1371
MboII	GAAGA	8 cut(s)	117, 199, 553, 1031, 1211, 1289, 1355, 1462
MfeI	CAATTG	2 cut(s)	295, 896
MluCI	AATT	8 cut(s)	295, 349, 461, 826, 896, 1289, 1320, 1434
Mly113I	GGCGCC	1 cut(s)	119
MlyI	GAGTC	3 cut(s)	103, 199, 580
MmeI	TCCRAC	3 cut(s)	265, 768, 1044
Mph1103I	ATGCAT	1 cut(s)	1039
MroNI	GCCGGC	1 cut(s)	548
MroXI	GAANNNNTTC	1 cut(s)	1221
MseI	TTAA	2 cut(s)	483, 1293
MslI	CAYNNNNRTG	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	4 cut(s)	457, 549, 581, 590
MspR9I	CCNGG	4 cut(s)	137, 457, 711, 1445
MunI	CAATTG	2 cut(s)	295, 896
Mva1269I	GAATGC	1 cut(s)	1414
MvaI	CCWGG	3 cut(s)	137, 711, 1445
MvnI	CGCG	2 cut(s)	625, 1070
MwoI	GCNNNNNNNGC	8 cut(s)	82, 154, 157, 163, 241, 503, 545, 706
NaeI	GCCGGC	1 cut(s)	550
NarI	GGCGCC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	457
NdeI	CATATG	1 cut(s)	1077
NdeII	GATC	4 cut(s)	7, 740, 874, 1371
NgoMIV	GCCGGC	1 cut(s)	548
NlaIII	CATG	5 cut(s)	428, 613, 770, 797, 1001
NlaIV	GGNNCC	2 cut(s)	120, 995
NmeAIII	GCCGAG	1 cut(s)	1186
NmuCI	GTSAC	3 cut(s)	12, 583, 1466
NsiI	ATGCAT	1 cut(s)	1039
NspI	RCATGY	1 cut(s)	770
PagI	TCATGA	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	1445
PctI	GAATGC	1 cut(s)	1414
PdiI	GCCGGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	1221
PfeI	GAWTC	6 cut(s)	25, 214, 442, 694, 910, 1222
PflMI	CCANNNNNTGG	2 cut(s)	362, 1003
PleI	GAGTC	3 cut(s)	102, 198, 580
PluTI	GGCGCC	1 cut(s)	122
PpsI	GAGTC	3 cut(s)	102, 198, 580
Psp6I	CCWGG	3 cut(s)	135, 709, 1443
PspGI	CCWGG	3 cut(s)	135, 709, 1443
PspN4I	GGNNCC	2 cut(s)	120, 995
PspPI	GGNCC	1 cut(s)	790
PstI	CTGCAG	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	2 cut(s)	821, 1209
RsaNI	GTAC	2 cut(s)	820, 1208
RseI	CAYNNNNRTG	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	1445
SaqAI	TTAA	2 cut(s)	483, 1293
Sau3AI	GATC	4 cut(s)	7, 740, 874, 1371
Sau96I	GGNCC	1 cut(s)	790
SchI	GAGTC	3 cut(s)	103, 199, 580
ScrFI	CCNGG	4 cut(s)	137, 457, 711, 1445
SfaNI	GCATC	1 cut(s)	963
SfcI	CTRYAG	1 cut(s)	104
SfoI	GGCGCC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	565
Sse9I	AATT	8 cut(s)	295, 349, 461, 826, 896, 1289, 1320, 1434
SspDI	GGCGCC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	566, 1176
StyD4I	CCNGG	4 cut(s)	135, 455, 709, 1443
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	3 cut(s)	435, 833, 1466
TaqI	TCGA	4 cut(s)	278, 445, 680, 743
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	8 cut(s)	295, 349, 461, 826, 896, 1289, 1320, 1434
TauI	GCSGC	5 cut(s)	79, 244, 260, 271, 274
TfiI	GAWTC	6 cut(s)	25, 214, 442, 694, 910, 1222
Tru1I	TTAA	2 cut(s)	483, 1293
Tru9I	TTAA	2 cut(s)	483, 1293
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	3 cut(s)	12, 583, 1466
TseI	GCWGC	7 cut(s)	103, 106, 148, 157, 160, 163, 244
Tsp45I	GTSAC	3 cut(s)	12, 583, 1466
TspRI	CASTG	1 cut(s)	838
Van91I	CCANNNNNTGG	2 cut(s)	362, 1003
VpaK11BI	GGWCC	1 cut(s)	790
XapI	RAATTY	2 cut(s)	461, 1289
XceI	RCATGY	1 cut(s)	770
XmnI	GAANNNNTTC	1 cut(s)	1221
XspI	CTAG	2 cut(s)	566, 1176
Zsp2I	ATGCAT	1 cut(s)	1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.