Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Forward (+)

86148058 .. 86149833

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1776 bp

ATGAACGATAAGTCACAGTTGATGAATCAACCCCCACCGCCGACGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCTCAGCCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTGCTGCTGCTGCTCAGCAGCAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGTCGCAGCAGCAGCAGCAACAGTTCGTCGCCGCCCAGAAGCCGACGCAGTCGAATCTGGGAAGGAATAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGAGAAAAACGTTCCCAATTTGCCCCTGAGTGGTGGTCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGCGGAGGAGGAGGAGGAGGGTATATACCTCCGACGCTAAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCTTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCTGTGCTCCCCACGCCCATTTTCTCGCCGTCGAGGGAGGTGTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCTCCTGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGCCGGTTTGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACACACATTGCTCAGTTGGAGGAAGAGAATTTGACGTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCACCATGTGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAATGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATCGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGGTTAGAGATGTTTCGATGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACGTAAGAACGAGGGAAGAAGGAATGACCTTGTAGGTAATGGGGTCGTTTCAGAGAAGGTTGAGGAAGCAAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGACAAAGAATGAGAATGAGTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAAGTTATGAGAAATGAAGTTGAGACCAAGCTTGAAAATGAGTTGATGCGCGGTCAGATGAATGCAGAGAAGGATGAAGAATTGGGAACTTCATTCACAGAGAATAATAAGACCGAGGGTCAGGTGAAGAATGAAGTTGAGACCGAGAATGAGAGTGAGTTGATGCAGGGTCAGATGATTGCACAGAGGGATGAAGAAATGGGAATTGGCAGCACAGAGAAGAGCATTGGCGTCGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

592

Amino Acids

65.64

Weight (kDa)

4.86

Isoelectric Point (pI)

60.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1391
AatII	GACGTC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	1056
AccB7I	CCANNNNNTGG	1 cut(s)	1066
AccII	CGCG	1 cut(s)	1584
AclI	AACGTT	1 cut(s)	348
AcoI	YGGCCR	2 cut(s)	230, 427
AcsI	RAATTY	3 cut(s)	521, 973, 1243
AcuI	CTGAAG	1 cut(s)	1515
AcyI	GRCGYC	2 cut(s)	581, 1764
AdeI	CACNNNGTG	1 cut(s)	1063
AfiI	CCNNNNNNNGG	4 cut(s)	368, 422, 1066, 1142
AgsI	TTSAA	3 cut(s)	985, 1307, 1568
AhdI	GACNNNNNGTC	1 cut(s)	1650
AjnI	CCWGG	1 cut(s)	769
AjuI	GAANNNNNNNTTGG	4 cut(s)	286, 318, 1722, 1754
AloI	GAACNNNNNNTCC	2 cut(s)	980, 1012
AluBI	AGCT	6 cut(s)	65, 219, 515, 599, 1423, 1564
AluI	AGCT	6 cut(s)	65, 219, 515, 599, 1423, 1564
Alw21I	GWGCWC	1 cut(s)	660
Alw26I	GTCTC	4 cut(s)	771, 1436, 1550, 1667
AoxI	GGCC	2 cut(s)	230, 427
ApoI	RAATTY	3 cut(s)	521, 973, 1243
AspLEI	GCGC	2 cut(s)	559, 1584
AspS9I	GGNCC	1 cut(s)	853
AsuHPI	GGTGA	5 cut(s)	655, 1247, 1438, 1489, 1669
AvaII	GGWCC	1 cut(s)	853
BaeGI	GKGCMC	1 cut(s)	1137
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	1056
BbsI	GAAGAC	2 cut(s)	123, 1503
Bbv12I	GWGCWC	1 cut(s)	660
BccI	CCATC	7 cut(s)	88, 115, 722, 997, 1060, 1112, 1210
BceAI	ACGGC	4 cut(s)	184, 217, 664, 720
BcgI	CGANNNNNNTGC	1 cut(s)	1747
BciT130I	CCWGG	1 cut(s)	771
BciVI	GTATCC	1 cut(s)	937
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	4 cut(s)	771, 1436, 1550, 1667
BfuI	GTATCC	1 cut(s)	937
BlpI	GCTNAGC	2 cut(s)	99, 165
Bme1390I	CCNGG	1 cut(s)	771
Bme18I	GGWCC	1 cut(s)	853
BmeRI	GACNNNNNGTC	1 cut(s)	1650
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	126, 1058
BmrFI	CCNGG	1 cut(s)	771
BmsI	GCATC	3 cut(s)	1155, 1569, 1686
BpiI	GAAGAC	2 cut(s)	123, 1503
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	941
Bpu1102I	GCTNAGC	2 cut(s)	99, 165
BpuEI	CTTGAG	4 cut(s)	51, 120, 1045, 1067
BsaHI	GRCGYC	2 cut(s)	581, 1764
BsaI	GGTCTC	3 cut(s)	771, 1550, 1667
BsaJI	CCNNGG	4 cut(s)	141, 569, 770, 1647
BsaWI	WCCGGW	3 cut(s)	213, 608, 640
BsaXI	ACNNNNNCTCC	8 cut(s)	833, 863, 980, 998, 1010, 1028, 1085, 1115
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 422, 1066, 1142
Bse118I	RCCGGY	1 cut(s)	867
Bse3DI	GCAATG	2 cut(s)	951, 1522
BseBI	CCWGG	1 cut(s)	771
BseDI	CCNNGG	4 cut(s)	141, 569, 770, 1647
BseGI	GGATG	6 cut(s)	733, 940, 1041, 1135, 1612, 1729
BseLI	CCNNNNNNNGG	4 cut(s)	368, 422, 1066, 1142
BseMI	GCAATG	2 cut(s)	951, 1522
BseMII	CTCAG	8 cut(s)	47, 113, 179, 209, 356, 410, 971, 1410
BseSI	GKGCMC	1 cut(s)	1137
Bsh1236I	CGCG	1 cut(s)	1584
BshFI	GGCC	2 cut(s)	232, 429
BshNI	GGYRCC	1 cut(s)	1056
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	4 cut(s)	214, 609, 641, 868
BslFI	GGGAC	2 cut(s)	713, 1034
BslI	CCNNNNNNNGG	4 cut(s)	368, 422, 1066, 1142
BsmAI	GTCTC	4 cut(s)	771, 1436, 1550, 1667
BsmFI	GGGAC	2 cut(s)	713, 1034
BsmI	GAATGC	1 cut(s)	1600
BsnI	GGCC	2 cut(s)	232, 429
Bso31I	GGTCTC	3 cut(s)	771, 1550, 1667
Bsp1286I	GDGCHC	2 cut(s)	660, 1137
Bsp143I	GATC	1 cut(s)	937
Bsp1720I	GCTNAGC	2 cut(s)	99, 165
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	2 cut(s)	232, 429
BspCNI	CTCAG	8 cut(s)	48, 112, 178, 208, 357, 411, 970, 1411
BspFNI	CGCG	1 cut(s)	1584
BspLI	GGNNCC	2 cut(s)	126, 1058
BspQI	GCTCTTC	1 cut(s)	1748
BspT107I	GGYRCC	1 cut(s)	1056
BspTNI	GGTCTC	3 cut(s)	771, 1550, 1667
BsrDI	GCAATG	2 cut(s)	951, 1522
BsrFI	RCCGGY	1 cut(s)	867
BssAI	RCCGGY	1 cut(s)	867
BssECI	CCNNGG	4 cut(s)	141, 569, 770, 1647
BssMI	GATC	1 cut(s)	937
BssNI	GRCGYC	2 cut(s)	581, 1764
BssT1I	CCWWGG	2 cut(s)	141, 569
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	6 cut(s)	18, 188, 255, 495, 896, 1196
Bst6I	CTCTTC	3 cut(s)	963, 1293, 1748
BstACI	GRCGYC	2 cut(s)	581, 1764
BstC8I	GCNNGC	2 cut(s)	80, 1513
BstDEI	CTNAG	9 cut(s)	56, 99, 165, 195, 365, 419, 600, 957, 1419
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	643
BstF5I	GGATG	6 cut(s)	733, 940, 1041, 1135, 1612, 1729
BstFNI	CGCG	1 cut(s)	1584
BstHHI	GCGC	2 cut(s)	559, 1584
BstKTI	GATC	1 cut(s)	940
BstMAI	GTCTC	4 cut(s)	771, 1436, 1550, 1667
BstMBI	GATC	1 cut(s)	937
BstNI	CCWGG	1 cut(s)	771
BstNSI	RCATGY	1 cut(s)	833
BstPI	GGTNACC	1 cut(s)	643
BstSCI	CCNGG	1 cut(s)	769
BstSLI	GKGCMC	1 cut(s)	1137
BstUI	CGCG	1 cut(s)	1584
BstV2I	GAAGAC	2 cut(s)	123, 1503
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	232, 429
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	6 cut(s)	733, 940, 1041, 1135, 1612, 1729
BtsIMutI	CAGTG	1 cut(s)	901
Cac8I	GCNNGC	2 cut(s)	80, 1513
CfoI	GCGC	2 cut(s)	559, 1584
Cfr10I	RCCGGY	1 cut(s)	867
Cfr13I	GGNCC	1 cut(s)	853
CseI	GACGC	3 cut(s)	286, 487, 1753
CviAII	CATG	7 cut(s)	73, 142, 830, 857, 1061, 1232, 1501
DdeI	CTNAG	9 cut(s)	56, 99, 165, 195, 365, 419, 600, 957, 1419
DpnI	GATC	1 cut(s)	939
DpnII	GATC	1 cut(s)	937
DraI	TTTAAA	1 cut(s)	1248
DraIII	CACNNNGTG	1 cut(s)	1063
DriI	GACNNNNNGTC	1 cut(s)	1650
EaeI	YGGCCR	2 cut(s)	230, 427
Eam1104I	CTCTTC	3 cut(s)	963, 1293, 1748
Eam1105I	GACNNNNNGTC	1 cut(s)	1650
EarI	CTCTTC	3 cut(s)	963, 1293, 1748
EciI	GGCGGA	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	141, 569
Eco31I	GGTCTC	3 cut(s)	771, 1550, 1667
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	1515
Eco91I	GGTNACC	1 cut(s)	643
EcoO65I	GGTNACC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	769
EcoT14I	CCWWGG	2 cut(s)	141, 569
ErhI	CCWWGG	2 cut(s)	141, 569
FaeI	CATG	7 cut(s)	76, 145, 833, 860, 1064, 1235, 1504
FaqI	GGGAC	2 cut(s)	713, 1034
FatI	CATG	7 cut(s)	72, 141, 829, 856, 1060, 1231, 1500
FauNDI	CATATG	1 cut(s)	1140
FbaI	TGATCA	1 cut(s)	937
FokI	GGATG	6 cut(s)	740, 947, 1048, 1142, 1619, 1736
GlaI	GCGC	2 cut(s)	558, 1583
GsuI	CTGGAG	1 cut(s)	941
HaeIII	GGCC	2 cut(s)	232, 429
HapII	CCGG	4 cut(s)	214, 609, 641, 868
HgaI	GACGC	3 cut(s)	286, 487, 1753
HhaI	GCGC	2 cut(s)	559, 1584
Hin1I	GRCGYC	2 cut(s)	581, 1764
Hin1II	CATG	7 cut(s)	76, 145, 833, 860, 1064, 1235, 1504
Hin6I	GCGC	2 cut(s)	557, 1582
HinP1I	GCGC	2 cut(s)	557, 1582
HindIII	AAGCTT	1 cut(s)	1562
HinfI	GANTC	5 cut(s)	25, 52, 286, 502, 754
HpaII	CCGG	4 cut(s)	214, 609, 641, 868
HphI	GGTGA	5 cut(s)	655, 1247, 1438, 1489, 1669
Hpy166II	GTNNAC	1 cut(s)	1480
Hpy188I	TCNGA	9 cut(s)	57, 378, 477, 519, 1105, 1129, 1360, 1590, 1707
Hpy188III	TCNNGA	4 cut(s)	941, 1000, 1046, 1188
Hpy8I	GTNNAC	1 cut(s)	1480
Hpy99I	CGWCG	9 cut(s)	46, 238, 263, 280, 481, 583, 586, 685, 1769
HpyAV	CCTTC	9 cut(s)	288, 301, 310, 703, 979, 1320, 1357, 1483, 1597
HpyCH4III	ACNGT	6 cut(s)	18, 188, 255, 495, 896, 1196
HpyCH4IV	ACGT	4 cut(s)	348, 581, 980, 1309
HpyCH4V	TGCA	7 cut(s)	1231, 1409, 1468, 1515, 1598, 1699, 1715
HpyF3I	CTNAG	9 cut(s)	56, 99, 165, 195, 365, 419, 600, 957, 1419
HpySE526I	ACGT	4 cut(s)	348, 581, 980, 1309
Hsp92I	GRCGYC	2 cut(s)	581, 1764
Hsp92II	CATG	7 cut(s)	76, 145, 833, 860, 1064, 1235, 1504
HspAI	GCGC	2 cut(s)	557, 1582
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	1 cut(s)	937
LguI	GCTCTTC	1 cut(s)	1748
LmnI	GCTCC	4 cut(s)	130, 216, 663, 826
LweI	GCATC	3 cut(s)	1155, 1569, 1686
MaeII	ACGT	4 cut(s)	348, 581, 980, 1309
MaeIII	GTNAC	5 cut(s)	12, 489, 495, 643, 1769
MalI	GATC	1 cut(s)	939
MboI	GATC	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	660, 1137
MlsI	TGGCCA	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	5 cut(s)	500, 831, 942, 1083, 1107
Mox20I	TGGCCA	1 cut(s)	429
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	3 cut(s)	543, 1077, 1247
MslI	CAYNNNNRTG	1 cut(s)	1169
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	4 cut(s)	214, 609, 641, 868
MspR9I	CCNGG	1 cut(s)	771
Mva1269I	GAATGC	1 cut(s)	1600
MvaI	CCWGG	1 cut(s)	771
MvnI	CGCG	1 cut(s)	1584
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	1140
NdeII	GATC	1 cut(s)	937
NlaIII	CATG	7 cut(s)	76, 145, 833, 860, 1064, 1235, 1504
NlaIV	GGNNCC	2 cut(s)	126, 1058
NmuCI	GTSAC	4 cut(s)	12, 495, 643, 1769
NspI	RCATGY	1 cut(s)	833
PciSI	GCTCTTC	1 cut(s)	1748
PctI	GAATGC	1 cut(s)	1600
PfeI	GAWTC	4 cut(s)	25, 286, 502, 754
PflFI	GACNNNGTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	1066
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	1391
Psp1406I	AACGTT	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	769
PspEI	GGTNACC	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	2 cut(s)	126, 1058
PspPI	GGNCC	1 cut(s)	853
PsrI	GAACNNNNNNTAC	2 cut(s)	203, 235
PsyI	GACNNNGTC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	1169
SapI	GCTCTTC	1 cut(s)	1748
SaqAI	TTAA	3 cut(s)	543, 1077, 1247
Sau3AI	GATC	1 cut(s)	937
Sau96I	GGNCC	1 cut(s)	853
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	771
SduI	GDGCHC	2 cut(s)	660, 1137
SfaNI	GCATC	3 cut(s)	1155, 1569, 1686
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	1169
SmlI	CTYRAG	4 cut(s)	66, 135, 1024, 1046
SmoI	CTYRAG	4 cut(s)	66, 135, 1024, 1046
StyD4I	CCNGG	1 cut(s)	769
StyI	CCWWGG	2 cut(s)	141, 569
TaaI	ACNGT	6 cut(s)	18, 188, 255, 495, 896, 1196
TaiI	ACGT	4 cut(s)	351, 584, 983, 1312
TaqI	TCGA	6 cut(s)	284, 505, 683, 740, 806, 1214
TaqII	GACCGA	3 cut(s)	753, 1661, 1691
TauI	GCSGC	7 cut(s)	85, 88, 106, 109, 112, 115, 266
TfiI	GAWTC	4 cut(s)	25, 286, 502, 754
Tru1I	TTAA	3 cut(s)	543, 1077, 1247
Tru9I	TTAA	3 cut(s)	543, 1077, 1247
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	4 cut(s)	12, 495, 643, 1769
Tsp45I	GTSAC	4 cut(s)	12, 495, 643, 1769
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	901
Tth111I	GACNNNGTC	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	1066
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	3 cut(s)	521, 973, 1243
XceI	RCATGY	1 cut(s)	833
ZraI	GACGTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.