Prupe.6G014100_v2.0.a1

PRLI-interacting factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
972228 .. 976201
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G014100.1

Sequence Viewer

Length: 1491 bp
ATGAACGATCAGTCGCAGCTGATGAATCAAGCGCCGATGATGAGTTTGAGCCAAGGTCAAGTCATGAGCCAGCCGATGCCGCAGATGATGAGCCAGCCGCCTCAGATGATGTCACAGTCATCTCAAGCCATGGCGGCTCAGCAGCAGCAGCAGCAGCAAATGATGATGAAGAGTCAGTCTCAGCCGTTGATGTTGAACCGAAACTACAAGGCTTGGCCTCAGCCTCAGCCTCAGCTACAGTTCGCGGCCCAAAAGCCTCCGTCGAATCTCGGACGCAACAATTGGAAAGGCAAGAAGGGCACCGACAAAAGGAACGACCAGAGAAGAATGGACAAGAATCTGAATGTCCCCAATTTGCCACCGAGTGGTCAGACCAGTAGCGGAGGAGGGCCGGGAGGGTACATACCCCCAACGCTTCATGAGTTACAGTCGCAGAATCGAATGAAAGCCCGGAAATTTTATCCCAAAAAGAAGTTTAACAATAGGTTTGCCCCTTACGCCCCAAGGAACACGACGTCCTTCATTATCAGAGCGAAGAAGTCCGGCGGCATAGCCTCGCTGGTTTCGCCTTGCCCGGTGACACCTGCTATTCTTCCCACGCCCATTTTCTCACCGTCGAGGGAGGTCTTGGGGGATATGGCGAAGGAGGAGTGGGGTGTTGATGGGTATGGGTCAATGAAGGGGTTGATTAGGCTGCGGTCGCCTGGAAATGATGATGACGAGGAAGAGGGTGGTGGTGGGTCAAGTGAGAGTGACGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGTCGGTTTGAGATGATATACCCGAACTACAGTGGGGTTGAGTATAACAACGTTTTGGAGAATCGAGTGGATGATCAGGATACCCATATAGCTCAATTGGAGGAAGAGAATCTGACATTGAAGGAGAGGCTTTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGCAGTTTCTTGAGAGGAGGCACCATGTAATGGAGGAGGTCAATGAGGAGGTGGTAGAAAATGGATCTGAGAATGATAGTGATGGAGGGTCAGATGTTCCCCATATGGTTATGGAAGGGGAGAGCAATGCTGAGGTGGTAGAGTATGTGTCCAGAGATGGAGGAAGTAGAAATGTTGGTGCCTTGGCTGAGAACGAACGTGTTAGGGACGTTGATGTAAGTATGGAAGACTATGCCCGCATTGAAATGATTTTAAAGGACAATGAAGTCAAAGATGAAACATCAAATGAGGTTAAAGATGAAACATCAAATGGGGTTGTAGGTGACGAGCAGAAAGAGGAAGGTAAGAATGAGCTTATACCGGAAGAAGTAATTGGAAATAAAAATGAGGTTAATGATAAGGTGAGTGAAGTTGGGACCAAGAATGAGAATGAGTTAATGCAGGGTGAGGTGAATGCGAAGAAGGATGAGGAAATGGGAATTGCGTGCCCAGAGAAGAGCATTGGCGACGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

497

Amino Acids

55.73

Weight (kDa)

4.83

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 592
AasI GACNNNNNNGTC 1 cut(s) 1238
AatII GACGTC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 592
AccB1I GGYRCC 3 cut(s) 299, 993, 1151
AccB7I CCANNNNNTGG 2 cut(s) 365, 1003
AccII CGCG 1 cut(s) 245
AciI CCGC 8 cut(s) 80, 98, 134, 245, 381, 546, 697, 1210
AclI AACGTT 1 cut(s) 852
AclWI GGATC 1 cut(s) 1045
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 515
AdeI CACNNNGTG 1 cut(s) 365
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 3 cut(s) 309, 365, 1003
AflIII ACRYGT 1 cut(s) 1171
AgsI TTSAA 3 cut(s) 196, 922, 1217
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 1329, 1361
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 4 cut(s) 19, 235, 893, 1327
AluI AGCT 4 cut(s) 19, 235, 893, 1327
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 1045
AoxI GGCC 3 cut(s) 215, 246, 389
ApeKI GCWGC 7 cut(s) 16, 142, 145, 148, 151, 154, 694
ApoI RAATTY 1 cut(s) 455
AspLEI GCGC 1 cut(s) 34
AspS9I GGNCC 4 cut(s) 247, 389, 790, 1389
AsuC2I CCSGG 3 cut(s) 393, 451, 575
AsuHPI GGTGA 6 cut(s) 589, 603, 1307, 1387, 1430, 1435
AvaII GGWCC 2 cut(s) 790, 1389
BaeGI GKGCMC 2 cut(s) 302, 1463
BanI GGYRCC 3 cut(s) 299, 993, 1151
BbsI GAAGAC 1 cut(s) 1206
BbvCI CCTCAGC 4 cut(s) 219, 225, 231, 1104
BbvI GCAGC 7 cut(s) 28, 154, 157, 160, 163, 166, 681
BccI CCATC 4 cut(s) 656, 934, 1049, 1124
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 874
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 3 cut(s) 393, 451, 575
BcoDI GTCTC 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 236, 829
BfoI RGCGCY 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 592
BfuI GTATCC 1 cut(s) 874
BglI GCCNNNNNGGC 1 cut(s) 134
BlpI GCTNAGC 1 cut(s) 138
Bme1390I CCNGG 4 cut(s) 393, 451, 575, 705
Bme18I GGWCC 2 cut(s) 790, 1389
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 4 cut(s) 247, 389, 790, 1389
BmiI GGNNCC 4 cut(s) 301, 995, 1153, 1390
BmrFI CCNGG 4 cut(s) 393, 451, 575, 705
BmsI GCATC 2 cut(s) 66, 963
BpiI GAAGAC 1 cut(s) 1206
BplI GAGNNNNNCTC 2 cut(s) 163, 195
Bpu10I CCTNAGC 4 cut(s) 219, 225, 231, 1104
Bpu1102I GCTNAGC 1 cut(s) 138
BpuEI CTTGAG 3 cut(s) 108, 982, 1004
BpuMI CCSGG 3 cut(s) 393, 451, 575
BsaHI GRCGYC 1 cut(s) 515
BsaJI CCNNGG 4 cut(s) 52, 129, 503, 1155
BsaWI WCCGGW 1 cut(s) 1333
BsaXI ACNNNNNCTCC 4 cut(s) 770, 800, 935, 965
Bsc4I CCNNNNNNNGG 3 cut(s) 309, 365, 1003
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 1105
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 4 cut(s) 52, 129, 503, 1155
BseGI GGATG 3 cut(s) 877, 978, 1444
BseLI CCNNNNNNNGG 3 cut(s) 309, 365, 1003
BseMI GCAATG 1 cut(s) 1105
BseMII CTCAG 9 cut(s) 116, 152, 194, 233, 239, 245, 1032, 1095, 1152
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 9 cut(s) 399, 662, 776, 796, 979, 982, 1003, 1022, 1034
BseSI GKGCMC 2 cut(s) 302, 1463
BseXI GCAGC 7 cut(s) 28, 154, 157, 160, 163, 166, 681
Bsh1236I CGCG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 701
BshFI GGCC 3 cut(s) 217, 248, 391
BshNI GGYRCC 3 cut(s) 299, 993, 1151
BsiEI CGRYCG 1 cut(s) 701
BsiSI CCGG 5 cut(s) 392, 451, 543, 575, 1334
BslFI GGGAC 4 cut(s) 332, 971, 1193, 1402
BslI CCNNNNNNNGG 3 cut(s) 309, 365, 1003
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 4 cut(s) 332, 971, 1193, 1402
BsmI GAATGC 1 cut(s) 1432
BsnI GGCC 3 cut(s) 217, 248, 391
Bsp1286I GDGCHC 2 cut(s) 302, 1463
Bsp143I GATC 3 cut(s) 7, 874, 1037
Bsp1720I GCTNAGC 1 cut(s) 138
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 8 cut(s) 80, 98, 134, 245, 381, 546, 697, 1210
BspANI GGCC 3 cut(s) 217, 248, 391
BspCNI CTCAG 9 cut(s) 115, 151, 193, 232, 238, 244, 1033, 1096, 1153
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 2 cut(s) 63, 418
BspLI GGNNCC 4 cut(s) 301, 995, 1153, 1390
BspMI ACCTGC 1 cut(s) 592
BspPI GGATC 1 cut(s) 1045
BspQI GCTCTTC 1 cut(s) 1463
BspT107I GGYRCC 3 cut(s) 299, 993, 1151
BsrDI GCAATG 1 cut(s) 1105
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 52, 129, 503, 1155
BssMI GATC 3 cut(s) 7, 874, 1037
BssNI GRCGYC 1 cut(s) 515
BssT1I CCWWGG 4 cut(s) 52, 129, 503, 1155
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 6 cut(s) 117, 240, 429, 615, 833, 1484
Bst6I CTCTTC 4 cut(s) 164, 720, 900, 1463
BstACI GRCGYC 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 71, 95, 1210, 1459
BstDEI CTNAG 9 cut(s) 102, 138, 180, 219, 225, 231, 1041, 1104, 1161
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 3 cut(s) 877, 978, 1444
BstFNI CGCG 1 cut(s) 245
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 3 cut(s) 10, 877, 1040
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 3 cut(s) 7, 874, 1037
BstMCI CGRYCG 1 cut(s) 701
BstMWI GCNNNNNNNGC 9 cut(s) 79, 134, 148, 151, 154, 297, 497, 565, 700
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 4 cut(s) 391, 449, 573, 703
BstSFI CTRYAG 2 cut(s) 236, 829
BstSLI GKGCMC 2 cut(s) 302, 1463
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 7 cut(s) 28, 154, 157, 160, 163, 166, 681
BstV2I GAAGAC 1 cut(s) 1206
BstX2I RGATCY 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 1037
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 217, 248, 391
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 3 cut(s) 877, 978, 1444
BtsIMutI CAGTG 1 cut(s) 838
BveI ACCTGC 1 cut(s) 592
Cac8I GCNNGC 4 cut(s) 71, 95, 1210, 1459
CciI TCATGA 2 cut(s) 63, 418
CfoI GCGC 1 cut(s) 34
Cfr13I GGNCC 4 cut(s) 247, 389, 790, 1389
CseI GACGC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 400
CviAII CATG 6 cut(s) 64, 130, 419, 767, 794, 998
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 9 cut(s) 102, 138, 180, 219, 225, 231, 1041, 1104, 1161
DpnI GATC 3 cut(s) 9, 876, 1039
DpnII GATC 3 cut(s) 7, 874, 1037
DraI TTTAAA 1 cut(s) 1227
DraIII CACNNNGTG 1 cut(s) 365
DrdI GACNNNNNNGTC 1 cut(s) 1238
DseDI GACNNNNNNGTC 1 cut(s) 1238
Eam1104I CTCTTC 4 cut(s) 164, 720, 900, 1463
EarI CTCTTC 4 cut(s) 164, 720, 900, 1463
Eco130I CCWWGG 4 cut(s) 52, 129, 503, 1155
Eco47I GGWCC 2 cut(s) 790, 1389
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 4 cut(s) 52, 129, 503, 1155
ErhI CCWWGG 4 cut(s) 52, 129, 503, 1155
FaeI CATG 6 cut(s) 67, 133, 422, 770, 797, 1001
FaqI GGGAC 4 cut(s) 332, 971, 1193, 1402
FatI CATG 6 cut(s) 63, 129, 418, 766, 793, 997
FauI CCCGC 1 cut(s) 1217
FauNDI CATATG 1 cut(s) 1077
FbaI TGATCA 1 cut(s) 874
FokI GGATG 3 cut(s) 884, 985, 1451
GlaI GCGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 3 cut(s) 217, 248, 391
HapII CCGG 5 cut(s) 392, 451, 543, 575, 1334
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 515
Hin1II CATG 6 cut(s) 67, 133, 422, 770, 797, 1001
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 8 cut(s) 25, 172, 265, 337, 436, 802, 862, 910
HpaII CCGG 5 cut(s) 392, 451, 543, 575, 1334
HphI GGTGA 6 cut(s) 589, 603, 1307, 1387, 1430, 1435
Hpy188I TCNGA 8 cut(s) 105, 272, 342, 372, 530, 915, 1042, 1066
Hpy188III TCNNGA 6 cut(s) 64, 419, 878, 937, 983, 1125
Hpy99I CGWCG 4 cut(s) 265, 517, 619, 1484
HpyAV CCTTC 8 cut(s) 289, 529, 637, 673, 916, 1082, 1307, 1429
HpyCH4III ACNGT 6 cut(s) 117, 240, 429, 615, 833, 1484
HpyCH4IV ACGT 5 cut(s) 515, 756, 852, 1171, 1182
HpyCH4V TGCA 2 cut(s) 976, 1414
HpyF10VI GCNNNNNNNGC 9 cut(s) 79, 134, 148, 151, 154, 297, 497, 565, 700
HpyF3I CTNAG 9 cut(s) 102, 138, 180, 219, 225, 231, 1041, 1104, 1161
HpySE526I ACGT 5 cut(s) 515, 756, 852, 1171, 1182
Hsp92I GRCGYC 1 cut(s) 515
Hsp92II CATG 6 cut(s) 67, 133, 422, 770, 797, 1001
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 3 cut(s) 7, 874, 1037
LguI GCTCTTC 1 cut(s) 1463
LmnI GCTCC 1 cut(s) 763
Lsp1109I GCAGC 7 cut(s) 28, 154, 157, 160, 163, 166, 681
LweI GCATC 2 cut(s) 66, 963
MaeII ACGT 5 cut(s) 515, 756, 852, 1171, 1182
MaeIII GTNAC 6 cut(s) 111, 423, 577, 752, 1295, 1484
MalI GATC 3 cut(s) 9, 876, 1039
MboI GATC 3 cut(s) 7, 874, 1037
MfeI CAATTG 2 cut(s) 280, 896
MflI RGATCY 1 cut(s) 1037
MhlI GDGCHC 2 cut(s) 302, 1463
MluCI AATT 6 cut(s) 280, 352, 455, 896, 1344, 1452
MlyI GAGTC 2 cut(s) 181, 811
MmeI TCCRAC 1 cut(s) 768
MseI TTAA 5 cut(s) 477, 1226, 1266, 1365, 1409
MslI CAYNNNNRTG 1 cut(s) 1217
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 5 cut(s) 392, 451, 543, 575, 1334
MspR9I CCNGG 4 cut(s) 393, 451, 575, 705
MunI CAATTG 2 cut(s) 280, 896
Mva1269I GAATGC 1 cut(s) 1432
MvaI CCWGG 1 cut(s) 705
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 9 cut(s) 79, 134, 148, 151, 154, 297, 497, 565, 700
NciI CCSGG 3 cut(s) 393, 451, 575
NcoI CCATGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 1077
NdeII GATC 3 cut(s) 7, 874, 1037
NlaIII CATG 6 cut(s) 67, 133, 422, 770, 797, 1001
NlaIV GGNNCC 4 cut(s) 301, 995, 1153, 1390
NmuCI GTSAC 5 cut(s) 111, 577, 752, 1295, 1484
NspI RCATGY 1 cut(s) 770
PagI TCATGA 2 cut(s) 63, 418
PaqCI CACCTGC 1 cut(s) 592
PciSI GCTCTTC 1 cut(s) 1463
PctI GAATGC 1 cut(s) 1432
PfeI GAWTC 6 cut(s) 25, 265, 337, 436, 862, 910
PflMI CCANNNNNTGG 2 cut(s) 365, 1003
PleI GAGTC 2 cut(s) 180, 810
PpsI GAGTC 2 cut(s) 180, 810
Psp1406I AACGTT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 4 cut(s) 301, 995, 1153, 1390
PspPI GGNCC 4 cut(s) 247, 389, 790, 1389
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
PsuI RGATCY 1 cut(s) 1037
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 1217
SapI GCTCTTC 1 cut(s) 1463
SaqAI TTAA 5 cut(s) 477, 1226, 1266, 1365, 1409
Sau3AI GATC 3 cut(s) 7, 874, 1037
Sau96I GGNCC 4 cut(s) 247, 389, 790, 1389
SchI GAGTC 2 cut(s) 181, 811
ScrFI CCNGG 4 cut(s) 393, 451, 575, 705
SduI GDGCHC 2 cut(s) 302, 1463
SfaNI GCATC 2 cut(s) 66, 963
SfcI CTRYAG 2 cut(s) 236, 829
SinI GGWCC 2 cut(s) 790, 1389
SmiMI CAYNNNNRTG 1 cut(s) 1217
SmlI CTYRAG 3 cut(s) 123, 961, 983
SmoI CTYRAG 3 cut(s) 123, 961, 983
Sse9I AATT 6 cut(s) 280, 352, 455, 896, 1344, 1452
SsiI CCGC 8 cut(s) 80, 98, 134, 245, 381, 546, 697, 1210
StyD4I CCNGG 4 cut(s) 391, 449, 573, 703
StyI CCWWGG 4 cut(s) 52, 129, 503, 1155
TaaI ACNGT 6 cut(s) 117, 240, 429, 615, 833, 1484
TaiI ACGT 5 cut(s) 518, 759, 855, 1174, 1185
TaqI TCGA 4 cut(s) 263, 439, 617, 865
TasI AATT 6 cut(s) 280, 352, 455, 896, 1344, 1452
TauI GCSGC 5 cut(s) 82, 100, 137, 248, 549
TfiI GAWTC 6 cut(s) 25, 265, 337, 436, 862, 910
Tru1I TTAA 5 cut(s) 477, 1226, 1266, 1365, 1409
Tru9I TTAA 5 cut(s) 477, 1226, 1266, 1365, 1409
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 5 cut(s) 111, 577, 752, 1295, 1484
TseI GCWGC 7 cut(s) 16, 142, 145, 148, 151, 154, 694
Tsp45I GTSAC 5 cut(s) 111, 577, 752, 1295, 1484
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 838
Van91I CCANNNNNTGG 2 cut(s) 365, 1003
VpaK11BI GGWCC 2 cut(s) 790, 1389
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 770
ZraI GACGTC 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.