Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027070.1

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Reverse (-)

3380 .. 5815

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027070.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

atgaacgataagtcacagttgatgaatcaacccccaccgccgccgatgttgagtctgagccaagctcaagccatgagccagccgccgccgatgatggctcagccgccgccgccgcagatgatggctccgtcttctcaagccatggctgctgctgctgctgctcagcagcaagtacagatgatgatgaacagtcaatctcagccgttgatgatgaaccggagctacaaggcttggccgccgcagcagcagcagcagcagcagttcgtcgccgcccagaagccgccgcagtcgaatctgggaaggaataattggaagggtaagaagggaaatgacaagcggagaatggagaaaaacgttcccaatttgcccctgagcggtggccaaagcagtagcggaggagggtataatgttcccaatttgcccctgagtggtggccagagcagcggaggaggcggaggagggtatatacctccgacgcttaacgagttacagtcacagaatcgaatgaaagctcggaaattttaccccaaaaagaagtttaacaataggtttgcgccttacgccccaaggaacacgacgtcgtttatcattagagctaagaagtccggtgggattgcttcgctggtttcgccttgtccggtgacccctgccgtgctccccacgcccattttctcgccgtcgagggaggttttgggggacacggcgaaggaggagtggggtgtggatgggtatgggtcgatgaaagggttgattcggcttcggtctcccgggaatgatgatgatgaggagggagggggtgggtcgagtgagagtgatgtggaggagcatgtggaggtggagaggaggttggaccatgatctgagccggttcgagatgatatacccgaattacagtggggttgagtataataatgtgctggagaatagagtggatgatcaggatacacacattgctcagttggaggaagagaatttgactttgaaggagaggctgttcttgatggagagggagttgggggacttgaggaggaggatgttgtttcttgagaggaggcaccatgtgatggaggaggttaatgaggaggttgtggagaatgggtcggagaacgatagtgatggagggtcggatgtgccccatatgggcatagggggagagagcaacattgaggtggtagattatgtgtccagaaacggtgggtttggggatgtttcgatggaagaatatgtgcatggtgaaatgaatttaaaggaaaatgaggtcaaagatgaagtgagaaatgaggttgtaggtaatgaagagattgaacgtaagaacgagggaagaaggaatgaccttgtaggtgatggggtcgtttcagagaagtctgccaggctgatggggaaggataggatgaactggggttgttctgaaattcttctcttttctgacctaataatgttcgtagggatcaggaattttgagctagcccatactgaaggtctaagactgttttctccgtcgtcaagaagtccaaagattgagaagagaccagtacttgttttggacttcatcactgagcagacatgtttattgtatgaggaagctgcttcatccgctccatctgtgatcttccaaatctttggtttgctgcatggactccttcacaacagactcaaccatgtggctgtgggttccaagttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

560

Amino Acids

62.18

Weight (kDa)

5.51

Isoelectric Point (pI)

64.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	1053
AccB7I	CCANNNNNTGG	1 cut(s)	1063
AccBSI	CCGCTC	2 cut(s)	375, 1595
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	1 cut(s)	1454
AcoI	YGGCCR	3 cut(s)	233, 379, 433
AcsI	RAATTY	5 cut(s)	518, 970, 1240, 1410, 1453
AcuI	CTGAAG	1 cut(s)	1494
AcyI	GRCGYC	1 cut(s)	578
AdeI	CACNNNGTG	1 cut(s)	1060
AfaI	GTAC	2 cut(s)	174, 1533
AfiI	CCNNNNNNNGG	4 cut(s)	374, 428, 1063, 1139
AflIII	ACRYGT	1 cut(s)	1562
AgsI	TTSAA	2 cut(s)	982, 1304
AjnI	CCWGG	1 cut(s)	1367
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AloI	GAACNNNNNNTCC	2 cut(s)	977, 1009
AluBI	AGCT	6 cut(s)	65, 222, 512, 596, 1462, 1583
AluI	AGCT	6 cut(s)	65, 222, 512, 596, 1462, 1583
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	768, 1519
AlwI	GGATC	1 cut(s)	1454
Ama87I	CYCGRG	1 cut(s)	767
AoxI	GGCC	3 cut(s)	233, 379, 433
ApoI	RAATTY	5 cut(s)	518, 970, 1240, 1410, 1453
Asp700I	GAANNNNTTC	1 cut(s)	1413
AspLEI	GCGC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	850
AsuC2I	CCSGG	2 cut(s)	768, 769
AsuHPI	GGTGA	3 cut(s)	652, 1244, 1352
AsuNHI	GCTAGC	1 cut(s)	1462
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	1 cut(s)	850
BaeGI	GKGCMC	1 cut(s)	1134
BalI	TGGCCA	2 cut(s)	381, 435
BanI	GGYRCC	1 cut(s)	1053
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	657
BceAI	ACGGC	4 cut(s)	187, 635, 661, 717
BciT130I	CCWGG	1 cut(s)	1369
BciVI	GTATCC	1 cut(s)	934
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	2 cut(s)	768, 769
BcoDI	GTCTC	2 cut(s)	768, 1519
BfaI	CTAG	1 cut(s)	1463
BfuI	GTATCC	1 cut(s)	934
BlpI	GCTNAGC	2 cut(s)	99, 162
BmcAI	AGTACT	1 cut(s)	1533
Bme1390I	CCNGG	3 cut(s)	768, 769, 1369
Bme18I	GGWCC	1 cut(s)	850
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	1 cut(s)	850
BmiI	GGNNCC	3 cut(s)	126, 1055, 1672
BmrFI	CCNGG	3 cut(s)	768, 769, 1369
BmrI	ACTGGG	1 cut(s)	1405
BmtI	GCTAGC	1 cut(s)	1466
BmuI	ACTGGG	1 cut(s)	1405
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	938
Bpu10I	CCTNAGC	1 cut(s)	371
Bpu1102I	GCTNAGC	2 cut(s)	99, 162
BpuEI	CTTGAG	4 cut(s)	51, 120, 1042, 1064
BpuMI	CCSGG	2 cut(s)	768, 769
BsaHI	GRCGYC	1 cut(s)	578
BsaI	GGTCTC	2 cut(s)	768, 1519
BsaJI	CCNNGG	3 cut(s)	141, 566, 767
BsaWI	WCCGGW	3 cut(s)	216, 605, 637
BsaXI	ACNNNNNCTCC	8 cut(s)	830, 860, 977, 995, 1007, 1025, 1082, 1112
Bsc4I	CCNNNNNNNGG	4 cut(s)	374, 428, 1063, 1139
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	2 cut(s)	1400, 1529
Bse3DI	GCAATG	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	1369
BseDI	CCNNGG	3 cut(s)	141, 566, 767
BseGI	GGATG	7 cut(s)	730, 937, 1038, 1132, 1210, 1395, 1589
BseLI	CCNNNNNNNGG	4 cut(s)	374, 428, 1063, 1139
BseMI	GCAATG	1 cut(s)	948
BseMII	CTCAG	9 cut(s)	47, 113, 176, 212, 362, 416, 851, 968, 1545
BseNI	ACTGG	2 cut(s)	1400, 1529
BseSI	GKGCMC	1 cut(s)	1134
BshFI	GGCC	3 cut(s)	235, 381, 435
BshNI	GGYRCC	1 cut(s)	1053
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	767
BsiSI	CCGG	5 cut(s)	217, 606, 638, 768, 865
BslFI	GGGAC	2 cut(s)	710, 1031
BslI	CCNNNNNNNGG	4 cut(s)	374, 428, 1063, 1139
BsmAI	GTCTC	2 cut(s)	768, 1519
BsmFI	GGGAC	2 cut(s)	710, 1031
BsnI	GGCC	3 cut(s)	235, 381, 435
Bso31I	GGTCTC	2 cut(s)	768, 1519
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	2 cut(s)	657, 1134
Bsp143I	GATC	4 cut(s)	856, 934, 1446, 1605
Bsp1720I	GCTNAGC	2 cut(s)	99, 162
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	3 cut(s)	235, 381, 435
BspCNI	CTCAG	9 cut(s)	48, 112, 175, 211, 363, 417, 852, 967, 1546
BspLI	GGNNCC	3 cut(s)	126, 1055, 1672
BspOI	GCTAGC	1 cut(s)	1466
BspPI	GGATC	1 cut(s)	1454
BspT107I	GGYRCC	1 cut(s)	1053
BspTNI	GGTCTC	2 cut(s)	768, 1519
BsrBI	CCGCTC	2 cut(s)	375, 1595
BsrDI	GCAATG	1 cut(s)	948
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	1400, 1529
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	3 cut(s)	141, 566, 767
BssMI	GATC	4 cut(s)	856, 934, 1446, 1605
BssNI	GRCGYC	1 cut(s)	578
BssT1I	CCWWGG	2 cut(s)	141, 566
Bst2UI	CCWGG	1 cut(s)	1369
Bst4CI	ACNGT	6 cut(s)	18, 191, 492, 893, 1193, 1488
Bst6I	CTCTTC	3 cut(s)	960, 1290, 1517
BstACI	GRCGYC	1 cut(s)	578
BstC8I	GCNNGC	2 cut(s)	80, 1464
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	640
BstF5I	GGATG	7 cut(s)	730, 937, 1038, 1132, 1210, 1395, 1589
BstHHI	GCGC	1 cut(s)	556
BstKTI	GATC	4 cut(s)	859, 937, 1449, 1608
BstMAI	GTCTC	2 cut(s)	768, 1519
BstMBI	GATC	4 cut(s)	856, 934, 1446, 1605
BstNI	CCWGG	1 cut(s)	1369
BstNSI	RCATGY	2 cut(s)	830, 1566
BstPI	GGTNACC	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	766, 767, 1367
BstSLI	GKGCMC	1 cut(s)	1134
BstV2I	GAAGAC	1 cut(s)	123
BstXI	CCANNNNNNTGG	2 cut(s)	1375, 1619
BsuI	GTATCC	1 cut(s)	934
BsuRI	GGCC	3 cut(s)	235, 381, 435
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	7 cut(s)	730, 937, 1038, 1132, 1210, 1395, 1589
BtsIMutI	CAGTG	2 cut(s)	898, 1551
Cac8I	GCNNGC	2 cut(s)	80, 1464
CfoI	GCGC	1 cut(s)	556
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	1 cut(s)	850
Cfr9I	CCCGGG	1 cut(s)	767
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	173, 1532
CviAII	CATG	9 cut(s)	73, 142, 827, 854, 1058, 1229, 1563, 1631, 1658
CviQI	GTAC	2 cut(s)	173, 1532
DpnI	GATC	4 cut(s)	858, 936, 1448, 1607
DpnII	GATC	4 cut(s)	856, 934, 1446, 1605
DraI	TTTAAA	1 cut(s)	1245
DraIII	CACNNNGTG	1 cut(s)	1060
EaeI	YGGCCR	3 cut(s)	233, 379, 433
Eam1104I	CTCTTC	3 cut(s)	960, 1290, 1517
EarI	CTCTTC	3 cut(s)	960, 1290, 1517
EciI	GGCGGA	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	141, 566
Eco31I	GGTCTC	2 cut(s)	768, 1519
Eco47I	GGWCC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	1494
Eco88I	CYCGRG	1 cut(s)	767
Eco91I	GGTNACC	1 cut(s)	640
EcoO65I	GGTNACC	1 cut(s)	640
EcoRII	CCWGG	1 cut(s)	1367
EcoT14I	CCWWGG	2 cut(s)	141, 566
ErhI	CCWWGG	2 cut(s)	141, 566
FaeI	CATG	9 cut(s)	76, 145, 830, 857, 1061, 1232, 1566, 1634, 1661
FaqI	GGGAC	2 cut(s)	710, 1031
FatI	CATG	9 cut(s)	72, 141, 826, 853, 1057, 1228, 1562, 1630, 1657
FauNDI	CATATG	1 cut(s)	1137
FbaI	TGATCA	1 cut(s)	934
FokI	GGATG	7 cut(s)	737, 944, 1045, 1139, 1217, 1402, 1576
FspBI	CTAG	1 cut(s)	1463
GlaI	GCGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	938
HaeIII	GGCC	3 cut(s)	235, 381, 435
HapII	CCGG	5 cut(s)	217, 606, 638, 768, 865
HgaI	GACGC	1 cut(s)	484
HhaI	GCGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	578
Hin1II	CATG	9 cut(s)	76, 145, 830, 857, 1061, 1232, 1566, 1634, 1661
Hin6I	GCGC	1 cut(s)	554
HinP1I	GCGC	1 cut(s)	554
HinfI	GANTC	7 cut(s)	25, 52, 292, 499, 751, 1635, 1650
HpaII	CCGG	5 cut(s)	217, 606, 638, 768, 865
HphI	GGTGA	3 cut(s)	652, 1244, 1352
Hpy188I	TCNGA	9 cut(s)	57, 474, 516, 861, 1102, 1126, 1357, 1408, 1426
Hpy188III	TCNNGA	7 cut(s)	871, 938, 997, 1043, 1185, 1450, 1503
Hpy99I	CGWCG	6 cut(s)	269, 478, 580, 583, 682, 1501
HpyAV	CCTTC	9 cut(s)	294, 307, 316, 700, 976, 1317, 1375, 1469, 1649
HpyCH4III	ACNGT	6 cut(s)	18, 191, 492, 893, 1193, 1488
HpyCH4IV	ACGT	3 cut(s)	354, 578, 1306
HpyCH4V	TGCA	2 cut(s)	1228, 1630
HpySE526I	ACGT	3 cut(s)	354, 578, 1306
Hsp92I	GRCGYC	1 cut(s)	578
Hsp92II	CATG	9 cut(s)	76, 145, 830, 857, 1061, 1232, 1566, 1634, 1661
HspAI	GCGC	1 cut(s)	554
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	856, 934, 1446, 1605
LmnI	GCTCC	5 cut(s)	130, 219, 660, 823, 1600
MaeI	CTAG	1 cut(s)	1463
MaeII	ACGT	3 cut(s)	354, 578, 1306
MaeIII	GTNAC	4 cut(s)	12, 486, 492, 640
MalI	GATC	4 cut(s)	858, 936, 1448, 1607
MbiI	CCGCTC	2 cut(s)	375, 1595
MboI	GATC	4 cut(s)	856, 934, 1446, 1605
MboII	GAAGA	8 cut(s)	123, 977, 1229, 1307, 1332, 1406, 1534, 1600
MhlI	GDGCHC	2 cut(s)	657, 1134
MlsI	TGGCCA	2 cut(s)	381, 435
MluCI	AATT	9 cut(s)	307, 361, 415, 518, 886, 970, 1240, 1410, 1453
MluNI	TGGCCA	2 cut(s)	381, 435
MlyI	GAGTC	3 cut(s)	61, 1629, 1644
MmeI	TCCRAC	5 cut(s)	497, 828, 939, 1080, 1104
Mox20I	TGGCCA	2 cut(s)	381, 435
MroXI	GAANNNNTTC	1 cut(s)	1413
MscI	TGGCCA	2 cut(s)	381, 435
MseI	TTAA	4 cut(s)	480, 540, 1074, 1244
MslI	CAYNNNNRTG	1 cut(s)	1166
Msp20I	TGGCCA	2 cut(s)	381, 435
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	5 cut(s)	217, 606, 638, 768, 865
MspR9I	CCNGG	3 cut(s)	768, 769, 1369
MvaI	CCWGG	1 cut(s)	1369
NciI	CCSGG	2 cut(s)	768, 769
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	1137
NdeII	GATC	4 cut(s)	856, 934, 1446, 1605
NheI	GCTAGC	1 cut(s)	1462
NlaIII	CATG	9 cut(s)	76, 145, 830, 857, 1061, 1232, 1566, 1634, 1661
NlaIV	GGNNCC	3 cut(s)	126, 1055, 1672
NmuCI	GTSAC	3 cut(s)	12, 492, 640
NspI	RCATGY	2 cut(s)	830, 1566
PciI	ACATGT	1 cut(s)	1562
PdmI	GAANNNNTTC	1 cut(s)	1413
PfeI	GAWTC	4 cut(s)	25, 292, 499, 751
PflMI	CCANNNNNTGG	1 cut(s)	1063
PleI	GAGTC	3 cut(s)	60, 1629, 1644
PpsI	GAGTC	3 cut(s)	60, 1629, 1644
PscI	ACATGT	1 cut(s)	1562
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	1367
PspEI	GGTNACC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	1367
PspN4I	GGNNCC	3 cut(s)	126, 1055, 1672
PspPI	GGNCC	1 cut(s)	850
PsrI	GAACNNNNNNTAC	2 cut(s)	206, 238
RsaI	GTAC	2 cut(s)	174, 1533
RsaNI	GTAC	2 cut(s)	173, 1532
RseI	CAYNNNNRTG	1 cut(s)	1166
SaqAI	TTAA	4 cut(s)	480, 540, 1074, 1244
Sau3AI	GATC	4 cut(s)	856, 934, 1446, 1605
Sau96I	GGNCC	1 cut(s)	850
ScaI	AGTACT	1 cut(s)	1533
SchI	GAGTC	3 cut(s)	61, 1629, 1644
ScrFI	CCNGG	3 cut(s)	768, 769, 1369
SduI	GDGCHC	2 cut(s)	657, 1134
SinI	GGWCC	1 cut(s)	850
SmaI	CCCGGG	1 cut(s)	769
SmiMI	CAYNNNNRTG	1 cut(s)	1166
SmlI	CTYRAG	4 cut(s)	66, 135, 1021, 1043
SmoI	CTYRAG	4 cut(s)	66, 135, 1021, 1043
Sse9I	AATT	9 cut(s)	307, 361, 415, 518, 886, 970, 1240, 1410, 1453
SspMI	CTAG	1 cut(s)	1463
StyD4I	CCNGG	3 cut(s)	766, 767, 1367
StyI	CCWWGG	2 cut(s)	141, 566
TaaI	ACNGT	6 cut(s)	18, 191, 492, 893, 1193, 1488
TaiI	ACGT	3 cut(s)	357, 581, 1309
TaqI	TCGA	7 cut(s)	290, 502, 680, 737, 803, 870, 1211
TaqII	GACCGA	1 cut(s)	750
TasI	AATT	9 cut(s)	307, 361, 415, 518, 886, 970, 1240, 1410, 1453
TatI	WGTACW	2 cut(s)	172, 1531
TfiI	GAWTC	4 cut(s)	25, 292, 499, 751
Tru1I	TTAA	4 cut(s)	480, 540, 1074, 1244
Tru9I	TTAA	4 cut(s)	480, 540, 1074, 1244
TscAI	CASTG	2 cut(s)	898, 1558
TseFI	GTSAC	3 cut(s)	12, 492, 640
Tsp45I	GTSAC	3 cut(s)	12, 492, 640
TspGWI	ACGGA	2 cut(s)	117, 1485
TspMI	CCCGGG	1 cut(s)	767
TspRI	CASTG	2 cut(s)	898, 1558
Van91I	CCANNNNNTGG	1 cut(s)	1063
VpaK11BI	GGWCC	1 cut(s)	850
XapI	RAATTY	5 cut(s)	518, 970, 1240, 1410, 1453
XceI	RCATGY	2 cut(s)	830, 1566
XmaI	CCCGGG	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	1413
XspI	CTAG	1 cut(s)	1463
ZraI	GACGTC	1 cut(s)	579
ZrmI	AGTACT	1 cut(s)	1533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.