MD11G1016000.v1.1

PRLI-interacting factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
1259381 .. 1262905
3525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1016000.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGAACGATCAGTCACAGCTGATGAATCAAGCGCCACCGATGATGAGTTTGAGCCAAGCTCAAGTGATGAGCCAGCCGCCCCCGCAGATGATGAGTCAGCCGCTGCAGCAGATGATGGCGCCGTCTTCTCAATCCCTGGCGGTTCAGCAGCAACAGCAGCAGCAGCAGCAATCTCAGTTGATGATGATGAAGAGTCAGTCTCAGCCTATGATGATGAATCGGAACTACAAGGCTTGGCCTCAGCCGCAGCCTCAGTTCGCCGCCCAAAAGCCGCCGCCGTCAAATGTTGGACGCAACAATTGGAAAGGCAAGAAGGGCGGAGATAAGAGGAGAACGGACAAGAATGTCCCCAATTTGCCGTTGAGTGGTCAGACAAGCGGAGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATACATACCCCCGACGCTTCATGAGTTACAGTCTCAGAATCGAATGAAAGCCCGGAAATTTTACCCCAAAAAAAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACATCGTATATTATTCGTGCGAAGAAGGCCGGCGGTATAGCCTCACTAGTTTCGCCTTATCCGGTGACTCCGGCTGTTCTGCCCACACCCATGTTCTCGCCTTCGCGGGAAGTCTTGGGGGATATGGCGAAAGAGGAGTGGGGTGTTGATGGGTATGGGTCGATGAAGGGGTTGATTCGGCTTCGGTCGCCTGGAAATGATGATGATGAGGGTGGTGGTGGATCGAGCGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGTAGGTTCGAGATGGTGTACCCGAATTACAGTGGGGTTGAGTATAACAATGCTTTGGAGAATAGAGTGGATGATCAGGATACGCATATAGCTCAATTGGAGGAGGAGAATCTGACATTGAAGGAGAGACTTTTCTTGATGGAGAGGGAGTTGGCGGATTTGAGGAGGCGGATGCAGTTCATTGAGAGGAGGTGCCATGTGATGGGGGAGGTCAATGAAGAGGTGGTGGAAAATGCATTTGAAAATGATAGCGATGGAGGGTCGGATGCACCCCATATGGGAATGGAGGGTGAGAACAATCCTGAGATGGTAGATTATGTATCGAGAGATGGAGGAAGTAGAAGTGTTGGCGCATTGGCCGAGAATGAAAGTGTTAGGGATGTTGATGTAGGTATGGAAGAATATGTGCCCAATGAAATGATTCTAAAGGAAAATGAGGTGAAAGATGAAACACGAAATGAGTTTGTAGGTAGCGAAGAGGTTGAGGAATTTAAGAGTGAGCTTACTCCAGAAAAAGTAACTGGAAATAAAAATGAGGCTGAAGATAAGATGGTGAAAGATGAAGTTGAGATCAAGAATGAGACTGAGTTAATGCAGGGTGAGATGAATGCAAAGAAGGATGAGGAAATGGGAATTGCGTGCCTGGAGAAGAGCATTGGCGACGTGTGTTGGTGGGAAAGAGAGGACGAACTGTTGGTGTTCTCAATTTTCTGCCCCATTCCGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

514

Amino Acids

57.53

Weight (kDa)

4.81

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 344
AccB1I GGYRCC 2 cut(s) 118, 1005
AccB7I CCANNNNNTGG 1 cut(s) 1015
AccII CGCG 1 cut(s) 637
AclWI GGATC 1 cut(s) 760
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 2 cut(s) 473, 1301
AcuI CTGAAG 1 cut(s) 1374
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 3 cut(s) 365, 1015, 1091
AflIII ACRYGT 1 cut(s) 1476
AgsI TTSAA 2 cut(s) 934, 1055
AhlI ACTAGT 1 cut(s) 577
AjiI CACGTC 1 cut(s) 1477
AjnI CCWGG 3 cut(s) 135, 721, 1455
AluBI AGCT 4 cut(s) 19, 59, 905, 1315
AluI AGCT 4 cut(s) 19, 59, 905, 1315
Alw26I GTCTC 4 cut(s) 204, 453, 934, 1388
AlwI GGATC 1 cut(s) 760
AlwNI CAGNNNCTG 1 cut(s) 103
AoxI GGCC 3 cut(s) 236, 558, 1170
ApeKI GCWGC 8 cut(s) 103, 106, 148, 157, 160, 163, 166, 247
ApoI RAATTY 2 cut(s) 473, 1301
Asp700I GAANNNNTTC 1 cut(s) 1233
AspLEI GCGC 4 cut(s) 34, 121, 511, 1166
AspS9I GGNCC 1 cut(s) 802
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 5 cut(s) 607, 1115, 1264, 1378, 1424
AvaII GGWCC 1 cut(s) 802
BaeGI GKGCMC 1 cut(s) 1224
BanI GGYRCC 2 cut(s) 118, 1005
BbsI GAAGAC 1 cut(s) 117
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 8 cut(s) 90, 118, 160, 169, 172, 175, 178, 259
BccI CCATC 9 cut(s) 109, 674, 820, 946, 1009, 1061, 1114, 1136, 1357
BceAI ACGGC 3 cut(s) 106, 262, 343
BciT130I CCWGG 3 cut(s) 137, 723, 1457
BciVI GTATCC 2 cut(s) 410, 886
BclI TGATCA 1 cut(s) 886
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 4 cut(s) 204, 453, 934, 1388
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 104
BfoI RGCGCY 2 cut(s) 35, 122
BfuI GTATCC 2 cut(s) 410, 886
Bme1390I CCNGG 4 cut(s) 137, 469, 723, 1457
Bme18I GGWCC 1 cut(s) 802
BmgBI CACGTC 1 cut(s) 1477
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 2 cut(s) 120, 1007
BmrFI CCNGG 4 cut(s) 137, 469, 723, 1457
BmsI GCATC 2 cut(s) 975, 1069
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 4 cut(s) 43, 75, 184, 216
BpmI CTGGAG 2 cut(s) 1305, 1478
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 135, 521
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 4 cut(s) 782, 812, 947, 977
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 1015, 1091
Bse118I RCCGGY 1 cut(s) 560
Bse1I ACTGG 1 cut(s) 1339
BseBI CCWGG 3 cut(s) 137, 723, 1457
BseDI CCNNGG 2 cut(s) 135, 521
BseGI GGATG 5 cut(s) 889, 990, 1084, 1198, 1438
BseLI CCNNNNNNNGG 3 cut(s) 365, 1015, 1091
BseMII CTCAG 7 cut(s) 188, 215, 254, 266, 464, 1107, 1389
BseNI ACTGG 1 cut(s) 1339
BseSI GKGCMC 1 cut(s) 1224
BseXI GCAGC 8 cut(s) 90, 118, 160, 169, 172, 175, 178, 259
Bsh1236I CGCG 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 719
BshFI GGCC 3 cut(s) 238, 560, 1172
BshNI GGYRCC 2 cut(s) 118, 1005
BsiEI CGRYCG 1 cut(s) 719
BsiSI CCGG 4 cut(s) 469, 561, 593, 602
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 3 cut(s) 365, 1015, 1091
BsmAI GTCTC 4 cut(s) 204, 453, 934, 1388
BsmFI GGGAC 1 cut(s) 332
BsmI GAATGC 1 cut(s) 1426
BsnI GGCC 3 cut(s) 238, 560, 1172
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp143I GATC 4 cut(s) 7, 752, 886, 1383
BspANI GGCC 3 cut(s) 238, 560, 1172
BspCNI CTCAG 7 cut(s) 187, 214, 253, 265, 463, 1108, 1390
BspFNI CGCG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 120, 1007
BspMAI CTGCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 760
BspQI GCTCTTC 1 cut(s) 1457
BspT107I GGYRCC 2 cut(s) 118, 1005
BsrFI RCCGGY 1 cut(s) 560
BsrI ACTGG 1 cut(s) 1339
BssAI RCCGGY 1 cut(s) 560
BssECI CCNNGG 2 cut(s) 135, 521
BssMI GATC 4 cut(s) 7, 752, 886, 1383
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 3 cut(s) 137, 723, 1457
Bst4CI ACNGT 3 cut(s) 447, 845, 1506
Bst6I CTCTTC 4 cut(s) 185, 1026, 1284, 1457
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 74, 562, 1453
BstDEI CTNAG 7 cut(s) 174, 201, 240, 252, 450, 1116, 1398
BstF5I GGATG 5 cut(s) 889, 990, 1084, 1198, 1438
BstFNI CGCG 1 cut(s) 637
BstH2I RGCGCY 2 cut(s) 35, 122
BstHHI GCGC 4 cut(s) 34, 121, 511, 1166
BstKTI GATC 4 cut(s) 10, 755, 889, 1386
BstMAI GTCTC 4 cut(s) 204, 453, 934, 1388
BstMBI GATC 4 cut(s) 7, 752, 886, 1383
BstMCI CGRYCG 1 cut(s) 719
BstNI CCWGG 3 cut(s) 137, 723, 1457
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 4 cut(s) 135, 467, 721, 1455
BstSFI CTRYAG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 1224
BstUI CGCG 1 cut(s) 637
BstV1I GCAGC 8 cut(s) 90, 118, 160, 169, 172, 175, 178, 259
BstV2I GAAGAC 1 cut(s) 117
BsuI GTATCC 2 cut(s) 410, 886
BsuRI GGCC 3 cut(s) 238, 560, 1172
BtgZI GCGATG 1 cut(s) 1080
BtrI CACGTC 1 cut(s) 1477
BtsCI GGATG 5 cut(s) 889, 990, 1084, 1198, 1438
BtsIMutI CAGTG 1 cut(s) 850
Cac8I GCNNGC 3 cut(s) 74, 562, 1453
CaiI CAGNNNCTG 1 cut(s) 103
CciI TCATGA 1 cut(s) 436
CfoI GCGC 4 cut(s) 34, 121, 511, 1166
Cfr10I RCCGGY 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 2 cut(s) 300, 439
Csp6I GTAC 1 cut(s) 832
CviAII CATG 5 cut(s) 437, 622, 779, 806, 1010
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 7 cut(s) 174, 201, 240, 252, 450, 1116, 1398
DinI GGCGCC 1 cut(s) 120
DpnI GATC 4 cut(s) 9, 754, 888, 1385
DpnII GATC 4 cut(s) 7, 752, 886, 1383
DrdI GACNNNNNNGTC 1 cut(s) 344
DseDI GACNNNNNNGTC 1 cut(s) 344
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 4 cut(s) 185, 1026, 1284, 1457
EarI CTCTTC 4 cut(s) 185, 1026, 1284, 1457
EciI GGCGGA 3 cut(s) 333, 983, 997
Eco130I CCWWGG 1 cut(s) 521
Eco47I GGWCC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 1374
EcoRII CCWGG 3 cut(s) 135, 721, 1455
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 1 cut(s) 1051
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 5 cut(s) 440, 625, 782, 809, 1013
FaqI GGGAC 1 cut(s) 332
FatI CATG 5 cut(s) 436, 621, 778, 805, 1009
FauI CCCGC 2 cut(s) 90, 630
FauNDI CATATG 1 cut(s) 1089
FbaI TGATCA 1 cut(s) 886
FokI GGATG 5 cut(s) 896, 997, 1091, 1205, 1445
FspBI CTAG 1 cut(s) 578
GlaI GCGC 4 cut(s) 33, 120, 510, 1165
GsuI CTGGAG 2 cut(s) 1305, 1478
HaeII RGCGCY 2 cut(s) 35, 122
HaeIII GGCC 3 cut(s) 238, 560, 1172
HapII CCGG 4 cut(s) 469, 561, 593, 602
HgaI GACGC 2 cut(s) 300, 439
HhaI GCGC 4 cut(s) 34, 121, 511, 1166
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 5 cut(s) 440, 625, 782, 809, 1013
Hin6I GCGC 4 cut(s) 32, 119, 509, 1164
HinP1I GCGC 4 cut(s) 32, 119, 509, 1164
HinfI GANTC 9 cut(s) 25, 94, 193, 217, 454, 598, 706, 922, 1234
HpaII CCGG 4 cut(s) 469, 561, 593, 602
HphI GGTGA 5 cut(s) 607, 1115, 1264, 1378, 1424
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 6 cut(s) 222, 372, 453, 927, 1078, 1536
Hpy188III TCNNGA 8 cut(s) 437, 823, 890, 949, 1115, 1137, 1322, 1387
Hpy8I GTNNAC 1 cut(s) 832
Hpy99I CGWCG 2 cut(s) 433, 1478
HpyAV CCTTC 6 cut(s) 307, 550, 642, 691, 928, 1423
HpyCH4III ACNGT 3 cut(s) 447, 845, 1506
HpyCH4IV ACGT 1 cut(s) 1476
HpyCH4V TGCA 6 cut(s) 106, 988, 1049, 1082, 1408, 1424
HpyF3I CTNAG 7 cut(s) 174, 201, 240, 252, 450, 1116, 1398
HpySE526I ACGT 1 cut(s) 1476
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 5 cut(s) 440, 625, 782, 809, 1013
HspAI GCGC 4 cut(s) 32, 119, 509, 1164
KasI GGCGCC 1 cut(s) 118
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 886
Kzo9I GATC 4 cut(s) 7, 752, 886, 1383
LguI GCTCTTC 1 cut(s) 1457
LmnI GCTCC 1 cut(s) 775
Lsp1109I GCAGC 8 cut(s) 90, 118, 160, 169, 172, 175, 178, 259
LweI GCATC 2 cut(s) 975, 1069
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 1476
MaeIII GTNAC 4 cut(s) 12, 441, 595, 1330
MalI GATC 4 cut(s) 9, 754, 888, 1385
MboI GATC 4 cut(s) 7, 752, 886, 1383
MboII GAAGA 8 cut(s) 117, 202, 565, 1043, 1223, 1301, 1367, 1474
MfeI CAATTG 2 cut(s) 298, 908
MhlI GDGCHC 1 cut(s) 1224
MluCI AATT 8 cut(s) 298, 352, 473, 838, 908, 1301, 1446, 1518
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 3 cut(s) 103, 202, 592
MmeI TCCRAC 3 cut(s) 268, 780, 1056
Mph1103I ATGCAT 1 cut(s) 1051
MroNI GCCGGC 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 1233
MseI TTAA 3 cut(s) 495, 1305, 1403
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 2 cut(s) 19, 103
MspI CCGG 4 cut(s) 469, 561, 593, 602
MspR9I CCNGG 4 cut(s) 137, 469, 723, 1457
MunI CAATTG 2 cut(s) 298, 908
Mva1269I GAATGC 1 cut(s) 1426
MvaI CCWGG 3 cut(s) 137, 723, 1457
MvnI CGCG 1 cut(s) 637
NaeI GCCGGC 1 cut(s) 562
NarI GGCGCC 1 cut(s) 119
NciI CCSGG 1 cut(s) 469
NdeI CATATG 1 cut(s) 1089
NdeII GATC 4 cut(s) 7, 752, 886, 1383
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 5 cut(s) 440, 625, 782, 809, 1013
NlaIV GGNNCC 2 cut(s) 120, 1007
NmeAIII GCCGAG 1 cut(s) 1198
NmuCI GTSAC 2 cut(s) 12, 595
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 1 cut(s) 782
PagI TCATGA 1 cut(s) 436
PciSI GCTCTTC 1 cut(s) 1457
PctI GAATGC 1 cut(s) 1426
PdiI GCCGGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 1233
PfeI GAWTC 6 cut(s) 25, 217, 454, 706, 922, 1234
PflMI CCANNNNNTGG 1 cut(s) 1015
PleI GAGTC 3 cut(s) 102, 201, 592
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 3 cut(s) 102, 201, 592
Psp6I CCWGG 3 cut(s) 135, 721, 1455
PspGI CCWGG 3 cut(s) 135, 721, 1455
PspN4I GGNNCC 2 cut(s) 120, 1007
PspPI GGNCC 1 cut(s) 802
PstI CTGCAG 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
RseI CAYNNNNRTG 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 1457
SaqAI TTAA 3 cut(s) 495, 1305, 1403
Sau3AI GATC 4 cut(s) 7, 752, 886, 1383
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 3 cut(s) 103, 202, 592
ScrFI CCNGG 4 cut(s) 137, 469, 723, 1457
SduI GDGCHC 1 cut(s) 1224
SfaNI GCATC 2 cut(s) 975, 1069
SfcI CTRYAG 1 cut(s) 104
SfoI GGCGCC 1 cut(s) 120
SinI GGWCC 1 cut(s) 802
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 60
SmoI CTYRAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 8 cut(s) 298, 352, 473, 838, 908, 1301, 1446, 1518
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 135, 467, 721, 1455
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 3 cut(s) 447, 845, 1506
TaiI ACGT 1 cut(s) 1479
TaqI TCGA 5 cut(s) 457, 692, 755, 822, 1136
TaqII GACCGA 1 cut(s) 705
TasI AATT 8 cut(s) 298, 352, 473, 838, 908, 1301, 1446, 1518
TauI GCSGC 6 cut(s) 79, 103, 247, 263, 274, 277
TfiI GAWTC 6 cut(s) 25, 217, 454, 706, 922, 1234
Tru1I TTAA 3 cut(s) 495, 1305, 1403
Tru9I TTAA 3 cut(s) 495, 1305, 1403
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 2 cut(s) 12, 595
TseI GCWGC 8 cut(s) 103, 106, 148, 157, 160, 163, 166, 247
Tsp45I GTSAC 2 cut(s) 12, 595
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 850
Van91I CCANNNNNTGG 1 cut(s) 1015
VpaK11BI GGWCC 1 cut(s) 802
XapI RAATTY 2 cut(s) 473, 1301
XceI RCATGY 1 cut(s) 782
XmnI GAANNNNTTC 1 cut(s) 1233
XspI CTAG 1 cut(s) 578
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.