Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Forward (+)

36979782 .. 36983171

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGAACGATCAGTCACATCCGCCGCCGATGATGAGCCTCAGCCAAGCTCAAGCCATGAGCCAGCAGCCGCAGATGATGACTCAGCCGCCGCCGCAGATGATGGCGCCGTCGTCTCAAGCCATGGCTGCTCAGCAGCAGCAGATGATGATGAACAGTCAGTCTCAGCCGATGATGATGAACCGGAGCTACAAGGCTTGGCCGCCGCAGCAGCAGCAGTTCGCCGCCGGGAAGCCGCCGCAGTCGAATCTCGGAAGGAACAATTGGAAGGGGAAGAAGGGAAATGACAAGAGGAGAATGGAGAAGATTGTTCCCAATTTGCCCCTGAGCGGCGGTCAGAGCAGTACTGGAGGGTATAATGTTCCGAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGGTACATACCTCCGACGCTTAATGAGTTACAGTCTCAGAATCAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTATAACAATAGGTTCGCGCCTTATGCGCCAAGGAACACGACCTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATCGCCTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCTGTGCTGCCCACGCCCATATTTTCGCCGTCCAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGTTCGATGAAAGGGTTGATTCGGCTTAGGTCTCCGGGGAATGATGATGATGAGGAGGGAGGGGGCGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGCAGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTCTTGGAGAATAGAGTGGATGATCAGGATACCCACATTGCTCAGTTGGAGGAGGAAAATTTGACTTTGAAAGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGAAGGCATCATGTGATGGAGGTGAATGAGGAGGTTGTGGAGAATGGTTCTGAGAATGATAGTGATGGAGGGTCGGATGTGCCTCATATGGGCATGGGAGGTGAGAGCAACATTGAGGTGGTAGATTATGTGTCTAGAGATGGTGTTAGGGATGTCTCGATGGAAGAATATGTTCATGATGAAATGAAATTAAAGGAAAATGAGGTCAAAGATGAATTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACATAAGGATGAGGGAAGAAGGAATGATCTTGTAGGTGATGGAGTTGTTTCGGAGAAGGTTGAGGAAGCAAGCAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGACTAGTGAAGGCGAGACAAAGAATGAGAATGAGTTTGTGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAGGTCTTGAGGAATGAAGTTGAGACTAAGATTGAAAATGAGTTGATGCAGGGTCAGATGAATGCAGAGAAGGATGAAGAAATGGGAACTTCATGCACAGAGAATAATAATACTGAGGCGGTGAAGAATGAAGTTAAGACCAAGAATGAGAGTCAGTTGATGCAGGGTCAGATGAATGCAGAGAGGGATGAAGAAATGGGAATTTCCAGCACAGAGAAGAGCATTGGCGTAGGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

570

Amino Acids

63.81

Weight (kDa)

4.83

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1328
Acc36I	ACCTGC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	327
AccII	CGCG	1 cut(s)	500
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	2 cut(s)	197, 382
AcsI	RAATTY	4 cut(s)	364, 464, 916, 1671
AcuI	CTGAAG	1 cut(s)	1452
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	2 cut(s)	343, 404
AfiI	CCNNNNNNNGG	3 cut(s)	326, 377, 1082
AgsI	TTSAA	3 cut(s)	928, 1244, 1505
AhlI	ACTAGT	1 cut(s)	1367
AjnI	CCWGG	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
AluBI	AGCT	5 cut(s)	47, 186, 458, 542, 1360
AluI	AGCT	5 cut(s)	47, 186, 458, 542, 1360
Alw26I	GTCTC	7 cut(s)	117, 165, 438, 714, 1153, 1373, 1487
AlwI	GGATC	1 cut(s)	566
AoxI	GGCC	2 cut(s)	197, 382
ApeKI	GCWGC	9 cut(s)	64, 125, 133, 136, 205, 208, 211, 390, 601
ApoI	RAATTY	4 cut(s)	364, 464, 916, 1671
Asp700I	GAANNNNTTC	1 cut(s)	1164
AspLEI	GCGC	3 cut(s)	106, 502, 511
AspS9I	GGNCC	1 cut(s)	796
AsuC2I	CCSGG	2 cut(s)	226, 714
AsuHPI	GGTGA	7 cut(s)	598, 1027, 1106, 1292, 1375, 1426, 1603
AvaII	GGWCC	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	1440
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	9 cut(s)	76, 112, 145, 148, 217, 220, 223, 402, 588
BccI	CCATC	8 cut(s)	94, 665, 940, 1003, 1052, 1127, 1147, 1277
BceAI	ACGGC	3 cut(s)	91, 607, 663
BciT130I	CCWGG	1 cut(s)	628
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	2 cut(s)	226, 714
BcoDI	GTCTC	7 cut(s)	117, 165, 438, 714, 1153, 1373, 1487
BcuI	ACTAGT	1 cut(s)	1367
BfaI	CTAG	2 cut(s)	1128, 1368
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	801
BfuI	GTATCC	1 cut(s)	880
BlpI	GCTNAGC	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	3 cut(s)	226, 628, 714
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	3 cut(s)	226, 628, 714
BmsI	GCATC	3 cut(s)	1009, 1506, 1620
BpiI	GAAGAC	1 cut(s)	1440
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	3 cut(s)	38, 323, 704
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuEI	CTTGAG	5 cut(s)	33, 99, 988, 1010, 1498
BpuMI	CCSGG	2 cut(s)	226, 714
BsaHI	GRCGYC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	4 cut(s)	120, 512, 627, 713
BsaWI	WCCGGW	3 cut(s)	180, 551, 583
BsaXI	ACNNNNNCTCC	4 cut(s)	776, 806, 941, 971
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 377, 1082
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	3 cut(s)	894, 1324, 1459
BseBI	CCWGG	1 cut(s)	628
BseDI	CCNNGG	4 cut(s)	120, 512, 627, 713
BseGI	GGATG	9 cut(s)	16, 676, 883, 984, 1075, 1150, 1258, 1549, 1663
BseLI	CCNNNNNNNGG	3 cut(s)	326, 377, 1082
BseMI	GCAATG	3 cut(s)	894, 1324, 1459
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	9 cut(s)	76, 112, 145, 148, 217, 220, 223, 402, 588
BsgI	GTGCAG	1 cut(s)	1424
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	2 cut(s)	199, 384
BshNI	GGYRCC	1 cut(s)	103
BsiSI	CCGG	5 cut(s)	181, 225, 552, 584, 713
BslFI	GGGAC	2 cut(s)	656, 977
BslI	CCNNNNNNNGG	3 cut(s)	326, 377, 1082
BsmAI	GTCTC	7 cut(s)	117, 165, 438, 714, 1153, 1373, 1487
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	656, 977
BsmI	GAATGC	2 cut(s)	1537, 1651
BsnI	GGCC	2 cut(s)	199, 384
Bso31I	GGTCTC	1 cut(s)	714
Bsp143I	GATC	4 cut(s)	7, 558, 880, 1270
Bsp1720I	GCTNAGC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	2 cut(s)	199, 384
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	801
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	1682
BspT107I	GGYRCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	3 cut(s)	894, 1324, 1459
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	4 cut(s)	120, 512, 627, 713
BssMI	GATC	4 cut(s)	7, 558, 880, 1270
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	2 cut(s)	120, 512
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	3 cut(s)	155, 432, 839
Bst6I	CTCTTC	2 cut(s)	1230, 1682
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	62, 1315, 1450
BstDSI	CCRYGG	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	9 cut(s)	16, 676, 883, 984, 1075, 1150, 1258, 1549, 1663
BstFNI	CGCG	1 cut(s)	500
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	3 cut(s)	106, 502, 511
BstKTI	GATC	4 cut(s)	10, 561, 883, 1273
BstMAI	GTCTC	7 cut(s)	117, 165, 438, 714, 1153, 1373, 1487
BstMBI	GATC	4 cut(s)	7, 558, 880, 1270
BstNI	CCWGG	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	776
BstPI	GGTNACC	1 cut(s)	586
BstSCI	CCNGG	3 cut(s)	224, 626, 712
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	9 cut(s)	76, 112, 145, 148, 217, 220, 223, 402, 588
BstV2I	GAAGAC	1 cut(s)	1440
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	2 cut(s)	199, 384
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	9 cut(s)	16, 676, 883, 984, 1075, 1150, 1258, 1549, 1663
BtsIMutI	CAGTG	1 cut(s)	844
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	3 cut(s)	62, 1315, 1450
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	3 cut(s)	106, 502, 511
Cfr13I	GGNCC	1 cut(s)	796
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	342, 403
CviAII	CATG	9 cut(s)	55, 121, 773, 800, 1004, 1087, 1169, 1438, 1563
CviQI	GTAC	2 cut(s)	342, 403
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	4 cut(s)	9, 560, 882, 1272
DpnII	GATC	4 cut(s)	7, 558, 880, 1270
EaeI	YGGCCR	2 cut(s)	197, 382
Eam1104I	CTCTTC	2 cut(s)	1230, 1682
EarI	CTCTTC	2 cut(s)	1230, 1682
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	120, 512
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	1452
Eco91I	GGTNACC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	626
EcoT14I	CCWWGG	2 cut(s)	120, 512
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	120, 512
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	9 cut(s)	58, 124, 776, 803, 1007, 1090, 1172, 1441, 1566
FaqI	GGGAC	2 cut(s)	656, 977
FatI	CATG	9 cut(s)	54, 120, 772, 799, 1003, 1086, 1168, 1437, 1562
FauI	CCCGC	1 cut(s)	737
FauNDI	CATATG	1 cut(s)	1080
FbaI	TGATCA	1 cut(s)	880
FokI	GGATG	9 cut(s)	3, 683, 890, 991, 1082, 1157, 1265, 1556, 1670
FspBI	CTAG	2 cut(s)	1128, 1368
GlaI	GCGC	3 cut(s)	105, 501, 510
GsuI	CTGGAG	1 cut(s)	366
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	199, 384
HapII	CCGG	5 cut(s)	181, 225, 552, 584, 713
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	106, 502, 511
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	9 cut(s)	58, 124, 776, 803, 1007, 1090, 1172, 1441, 1566
Hin6I	GCGC	3 cut(s)	104, 500, 509
HinP1I	GCGC	3 cut(s)	104, 500, 509
HinfI	GANTC	6 cut(s)	79, 244, 439, 445, 697, 1621
HpaII	CCGG	5 cut(s)	181, 225, 552, 584, 713
HphI	GGTGA	7 cut(s)	598, 1027, 1106, 1292, 1375, 1426, 1603
Hpy166II	GTNNAC	1 cut(s)	1417
Hpy188III	TCNNGA	8 cut(s)	817, 884, 943, 989, 1128, 1150, 1169, 1477
Hpy8I	GTNNAC	1 cut(s)	1417
Hpy99I	CGWCG	2 cut(s)	112, 418
HpyCH4III	ACNGT	3 cut(s)	155, 432, 839
HpyCH4V	TGCA	8 cut(s)	1346, 1405, 1452, 1519, 1535, 1566, 1633, 1649
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	9 cut(s)	58, 124, 776, 803, 1007, 1090, 1172, 1441, 1566
HspAI	GCGC	3 cut(s)	104, 500, 509
KasI	GGCGCC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	7, 558, 880, 1270
LguI	GCTCTTC	1 cut(s)	1682
LmnI	GCTCC	2 cut(s)	183, 769
Lsp1109I	GCAGC	9 cut(s)	76, 112, 145, 148, 217, 220, 223, 402, 588
LweI	GCATC	3 cut(s)	1009, 1506, 1620
MaeI	CTAG	2 cut(s)	1128, 1368
MaeIII	GTNAC	5 cut(s)	12, 426, 586, 1363, 1703
MalI	GATC	4 cut(s)	9, 560, 882, 1272
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	4 cut(s)	7, 558, 880, 1270
MfeI	CAATTG	1 cut(s)	259
MlsI	TGGCCA	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	384
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	73, 1630
MmeI	TCCRAC	4 cut(s)	437, 774, 885, 1047
Mox20I	TGGCCA	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	1164
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	3 cut(s)	420, 1184, 1605
MslI	CAYNNNNRTG	2 cut(s)	1109, 1251
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	393
MspI	CCGG	5 cut(s)	181, 225, 552, 584, 713
MspR9I	CCNGG	3 cut(s)	226, 628, 714
MunI	CAATTG	1 cut(s)	259
Mva1269I	GAATGC	2 cut(s)	1537, 1651
MvaI	CCWGG	1 cut(s)	628
MvnI	CGCG	1 cut(s)	500
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	2 cut(s)	226, 714
NcoI	CCATGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	1080
NdeII	GATC	4 cut(s)	7, 558, 880, 1270
NlaIII	CATG	9 cut(s)	58, 124, 776, 803, 1007, 1090, 1172, 1441, 1566
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	4 cut(s)	12, 586, 1363, 1703
NspI	RCATGY	1 cut(s)	776
PagI	TCATGA	1 cut(s)	1168
PciSI	GCTCTTC	1 cut(s)	1682
PctI	GAATGC	2 cut(s)	1537, 1651
PdmI	GAANNNNTTC	1 cut(s)	1164
PfeI	GAWTC	4 cut(s)	244, 439, 445, 697
PleI	GAGTC	2 cut(s)	73, 1629
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	2 cut(s)	73, 1629
PsiI	TTATAA	1 cut(s)	1328
Psp6I	CCWGG	1 cut(s)	626
PspEI	GGTNACC	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	796
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	2 cut(s)	343, 404
RsaNI	GTAC	2 cut(s)	342, 403
RseI	CAYNNNNRTG	2 cut(s)	1109, 1251
SapI	GCTCTTC	1 cut(s)	1682
SaqAI	TTAA	3 cut(s)	420, 1184, 1605
Sau3AI	GATC	4 cut(s)	7, 558, 880, 1270
Sau96I	GGNCC	1 cut(s)	796
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	2 cut(s)	73, 1630
ScrFI	CCNGG	3 cut(s)	226, 628, 714
SfaNI	GCATC	3 cut(s)	1009, 1506, 1620
SfoI	GGCGCC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	2 cut(s)	1109, 1251
SmlI	CTYRAG	5 cut(s)	48, 114, 967, 989, 1477
SmoI	CTYRAG	5 cut(s)	48, 114, 967, 989, 1477
SpeI	ACTAGT	1 cut(s)	1367
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	2 cut(s)	1128, 1368
StyD4I	CCNGG	3 cut(s)	224, 626, 712
StyI	CCWWGG	2 cut(s)	120, 512
TaaI	ACNGT	3 cut(s)	155, 432, 839
TaqI	TCGA	6 cut(s)	242, 448, 683, 749, 816, 1151
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	4 cut(s)	244, 439, 445, 697
Tru1I	TTAA	3 cut(s)	420, 1184, 1605
Tru9I	TTAA	3 cut(s)	420, 1184, 1605
TscAI	CASTG	1 cut(s)	844
TseFI	GTSAC	4 cut(s)	12, 586, 1363, 1703
TseI	GCWGC	9 cut(s)	64, 125, 133, 136, 205, 208, 211, 390, 601
Tsp45I	GTSAC	4 cut(s)	12, 586, 1363, 1703
TspRI	CASTG	1 cut(s)	844
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	4 cut(s)	364, 464, 916, 1671
XbaI	TCTAGA	1 cut(s)	1127
XceI	RCATGY	1 cut(s)	776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	634
XmnI	GAANNNNTTC	1 cut(s)	1164
XspI	CTAG	2 cut(s)	1128, 1368
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.