Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Reverse (-)

1180641 .. 1183584

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1014800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGAACGATCAGTCAAAGCTGATGAATCGAGCGCCGCCGATGATGAGTTTGAGCCAAGCTCAAGTGATGAACCAGCCGCTGCCACAGATGATGAGTCAGCCGCAGCCGCAGATGATGGCACCGTCGTCGCAGGCCATGGCGGTTCAGCAGCAATCTCAGTTGATGATGATGAAGAGTCAGTCTCAGCCGATGATGATGAATCGGAACTACAAGGCTTGGCCTCAGCCGCAGCCTCAATTCGCTGCCCAAAAGCCGCCGCCGTCGAATCTTGGGCGTAACAATTGGAAAGGCAAGAAGGGCGGAGATAAGAGGAGGATGGACAAGAATGTCCCCAATTTGCCGCTGAGTGGTCAGACCAGCGGAGGAGGAGGAGGCGGAGGAGGAGGGTACATACCGCCGACGCTTCACGAGTTACAGTCTCAGAATCGAATGAAAGCCCGGAAATTTTACCCGAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATTATTAGAGCGAAGAAGGCCGGCGGCATAGCCTCGCTGGTTTCACCTTGTGCCGTAACTCCGGCTGTTCTGCCCACGCCCATGTTCTCGCCTTCGAGCGAGGTCTTGGGAGATATGGCGAAAGAGGAGTGGGGTATTGATGGCTATGGGTCAATGAAAGGGTTGATTCGGCTTCGGTCACCTGGAAATGATGACGAGGAGGGTGGTGGCGGATCGAGTGAGAGCGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGACTTGAGTCGGTTCGAGATGGTGTACCCGAACTACAGCGGGGTTGAGTATAACAATGCTTTGGAGAATAGGGTGGATGATCAGGATACTCATATTGCTCAATTAGAGGAAGAGAATCTGACCTTGAAGGAGAGGCTTTTCTTGATGGAGAGGGAGTTGGCGGATTTGAGAAGGAGGATGCAGTTCATTGAGAAGAGGTACCATGTGATGGGGGAGGTCAATGAAGAGGTGGTGGAAAATGGATCTGAAAATGATAGTGATGGAGGGTCGGATGCCCCTCATATGGGTACAGAGGGTGAGAGCAATCCTGAGATGGTAGAGTATGTGTCGAGAGATGGAGGAAGCAGAAGTGTTGGCCCATTGGCCGAGGATGAAATTGTTAGGGATGTTGATGTAGGGATGGAAGAATATGTGCCCGATGAAATGATTTTGAAGGTAAATGAGGCGAATGATGAAACACGAAATGAGTTTGTAGGTAACGAAGAGGTTGAGGAATTTAAGAGTGAGCTTACCCCAGAAGAACTAATTGGAAATAAAAATGAGGTTGAAGATAAGAAAGTGAAGGATGAAGTCGAGTCAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

455

Amino Acids

50.84

Weight (kDa)

4.92

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
AatII	GACGTC	1 cut(s)	506
Acc65I	GGTACC	1 cut(s)	975
AccB1I	GGYRCC	2 cut(s)	118, 975
AccB7I	CCANNNNNTGG	1 cut(s)	985
AclWI	GGATC	2 cut(s)	730, 1027
AcoI	YGGCCR	1 cut(s)	1140
AcsI	RAATTY	2 cut(s)	443, 1271
AcyI	GRCGYC	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	4 cut(s)	389, 803, 977, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	347, 985, 1060, 1061
AgsI	TTSAA	3 cut(s)	904, 1210, 1325
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	2 cut(s)	1287, 1319
AluBI	AGCT	3 cut(s)	19, 59, 1285
AluI	AGCT	3 cut(s)	19, 59, 1285
Alw26I	GTCTC	2 cut(s)	186, 423
AlwI	GGATC	2 cut(s)	730, 1027
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	5 cut(s)	132, 218, 528, 1132, 1140
ApeKI	GCWGC	5 cut(s)	79, 103, 148, 229, 242
ApoI	RAATTY	2 cut(s)	443, 1271
Asp718I	GGTACC	1 cut(s)	975
AspLEI	GCGC	2 cut(s)	34, 481
AspS9I	GGNCC	2 cut(s)	772, 1133
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	3 cut(s)	546, 681, 1085
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	1194
BanI	GGYRCC	2 cut(s)	118, 975
BauI	CACGAG	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	66, 115, 160, 229, 241
BceAI	ACGGC	2 cut(s)	244, 548
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	1 cut(s)	693
BciVI	GTATCC	1 cut(s)	856
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	186, 423
BfmI	CTRYAG	1 cut(s)	811
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	856
Bme1390I	CCNGG	2 cut(s)	439, 693
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	772, 1133
BmiI	GGNNCC	2 cut(s)	120, 977
BmrFI	CCNGG	2 cut(s)	439, 693
BmsI	GCATC	2 cut(s)	945, 1039
BoxI	GACNNNNGTC	1 cut(s)	783
BplI	GAGNNNNNCTC	4 cut(s)	43, 75, 166, 198
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	45, 802
BpuMI	CCSGG	1 cut(s)	439
BsaHI	GRCGYC	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	135, 491, 1143
BsaXI	ACNNNNNCTCC	4 cut(s)	752, 782, 917, 947
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 985, 1060, 1061
Bse118I	RCCGGY	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	3 cut(s)	135, 491, 1143
BseGI	GGATG	8 cut(s)	321, 859, 960, 1054, 1153, 1168, 1182, 1348
BseLI	CCNNNNNNNGG	4 cut(s)	347, 985, 1060, 1061
BseMII	CTCAG	6 cut(s)	170, 197, 236, 335, 434, 1077
BseSI	GKGCMC	1 cut(s)	1194
BseXI	GCAGC	5 cut(s)	66, 115, 160, 229, 241
BshFI	GGCC	5 cut(s)	134, 220, 530, 1134, 1142
BshNI	GGYRCC	2 cut(s)	118, 975
BsiSI	CCGG	3 cut(s)	439, 531, 572
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	4 cut(s)	347, 985, 1060, 1061
BsmAI	GTCTC	2 cut(s)	186, 423
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	5 cut(s)	134, 220, 530, 1134, 1142
Bsp1286I	GDGCHC	1 cut(s)	1194
Bsp143I	GATC	4 cut(s)	7, 722, 856, 1019
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	5 cut(s)	134, 220, 530, 1134, 1142
BspCNI	CTCAG	6 cut(s)	169, 196, 235, 336, 433, 1078
BspLI	GGNNCC	2 cut(s)	120, 977
BspPI	GGATC	2 cut(s)	730, 1027
BspT107I	GGYRCC	2 cut(s)	118, 975
BsrFI	RCCGGY	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	3 cut(s)	135, 491, 1143
BssMI	GATC	4 cut(s)	7, 722, 856, 1019
BssNI	GRCGYC	1 cut(s)	503
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	135, 491
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	693
Bst4CI	ACNGT	2 cut(s)	123, 417
Bst6I	CTCTTC	5 cut(s)	167, 882, 965, 996, 1254
BstACI	GRCGYC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	132, 532
BstDEI	CTNAG	6 cut(s)	156, 183, 222, 344, 420, 1086
BstDSI	CCRYGG	1 cut(s)	135
BstEII	GGTNACC	1 cut(s)	687
BstF5I	GGATG	8 cut(s)	321, 859, 960, 1054, 1153, 1168, 1182, 1348
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 481
BstKTI	GATC	4 cut(s)	10, 725, 859, 1022
BstMAI	GTCTC	2 cut(s)	186, 423
BstMBI	GATC	4 cut(s)	7, 722, 856, 1019
BstMWI	GCNNNNNNNGC	5 cut(s)	106, 226, 297, 485, 527
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	752
BstPAI	GACNNNNGTC	1 cut(s)	783
BstPI	GGTNACC	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	437, 691
BstSFI	CTRYAG	1 cut(s)	811
BstSLI	GKGCMC	1 cut(s)	1194
BstV1I	GCAGC	5 cut(s)	66, 115, 160, 229, 241
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
BsuI	GTATCC	1 cut(s)	856
BsuRI	GGCC	5 cut(s)	134, 220, 530, 1134, 1142
BtgI	CCRYGG	1 cut(s)	135
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	8 cut(s)	321, 859, 960, 1054, 1153, 1168, 1182, 1348
Cac8I	GCNNGC	2 cut(s)	132, 532
CaiI	CAGNNNCTG	1 cut(s)	79
CfoI	GCGC	2 cut(s)	34, 481
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	772, 1133
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	4 cut(s)	388, 802, 976, 1065
CviAII	CATG	5 cut(s)	136, 592, 749, 776, 980
CviQI	GTAC	4 cut(s)	388, 802, 976, 1065
DdeI	CTNAG	6 cut(s)	156, 183, 222, 344, 420, 1086
DpnI	GATC	4 cut(s)	9, 724, 858, 1021
DpnII	GATC	4 cut(s)	7, 722, 856, 1019
DraIII	CACNNNGTG	1 cut(s)	560
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	1140
Eam1104I	CTCTTC	5 cut(s)	167, 882, 965, 996, 1254
EarI	CTCTTC	5 cut(s)	167, 882, 965, 996, 1254
EciI	GGCGGA	4 cut(s)	315, 390, 735, 953
Eco130I	CCWWGG	2 cut(s)	135, 491
Eco47I	GGWCC	1 cut(s)	772
Eco91I	GGTNACC	1 cut(s)	687
EcoO65I	GGTNACC	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	691
EcoT14I	CCWWGG	2 cut(s)	135, 491
ErhI	CCWWGG	2 cut(s)	135, 491
FaeI	CATG	5 cut(s)	139, 595, 752, 779, 983
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	5 cut(s)	135, 591, 748, 775, 979
FauI	CCCGC	1 cut(s)	809
FauNDI	CATATG	1 cut(s)	1059
FbaI	TGATCA	1 cut(s)	856
FokI	GGATG	8 cut(s)	328, 866, 967, 1061, 1160, 1175, 1189, 1355
GlaI	GCGC	2 cut(s)	33, 480
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	5 cut(s)	134, 220, 530, 1134, 1142
HapII	CCGG	3 cut(s)	439, 531, 572
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	34, 481
Hin1I	GRCGYC	1 cut(s)	503
Hin1II	CATG	5 cut(s)	139, 595, 752, 779, 983
Hin6I	GCGC	2 cut(s)	32, 479
HinP1I	GCGC	2 cut(s)	32, 479
HpaII	CCGG	3 cut(s)	439, 531, 572
HphI	GGTGA	3 cut(s)	546, 681, 1085
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	6 cut(s)	204, 354, 423, 897, 1024, 1048
Hpy188III	TCNNGA	7 cut(s)	407, 793, 860, 919, 1085, 1107, 1356
Hpy8I	GTNNAC	1 cut(s)	802
Hpy99I	CGWCG	6 cut(s)	127, 130, 265, 403, 505, 508
HpyAV	CCTTC	7 cut(s)	289, 520, 612, 898, 942, 1204, 1333
HpyCH4III	ACNGT	2 cut(s)	123, 417
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	1 cut(s)	958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	106, 226, 297, 485, 527
HpyF3I	CTNAG	6 cut(s)	156, 183, 222, 344, 420, 1086
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	503
Hsp92II	CATG	5 cut(s)	139, 595, 752, 779, 983
HspAI	GCGC	2 cut(s)	32, 479
KpnI	GGTACC	1 cut(s)	979
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	7, 722, 856, 1019
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	5 cut(s)	66, 115, 160, 229, 241
LweI	GCATC	2 cut(s)	945, 1039
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	5 cut(s)	275, 411, 565, 687, 1253
MalI	GATC	4 cut(s)	9, 724, 858, 1021
MboI	GATC	4 cut(s)	7, 722, 856, 1019
MboII	GAAGA	9 cut(s)	184, 535, 899, 982, 1013, 1193, 1271, 1307, 1337
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	1 cut(s)	1194
MluCI	AATT	8 cut(s)	236, 280, 334, 443, 878, 1152, 1271, 1302
MlyI	GAGTC	4 cut(s)	103, 184, 793, 1361
MmeI	TCCRAC	2 cut(s)	750, 1026
MroNI	GCCGGC	1 cut(s)	530
MseI	TTAA	2 cut(s)	465, 1275
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	4 cut(s)	79, 343, 360, 816
MspI	CCGG	3 cut(s)	439, 531, 572
MspR9I	CCNGG	2 cut(s)	439, 693
MunI	CAATTG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	5 cut(s)	106, 226, 297, 485, 527
NaeI	GCCGGC	1 cut(s)	532
NciI	CCSGG	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	135
NdeI	CATATG	1 cut(s)	1059
NdeII	GATC	4 cut(s)	7, 722, 856, 1019
NgoMIV	GCCGGC	1 cut(s)	530
NlaIII	CATG	5 cut(s)	139, 595, 752, 779, 983
NlaIV	GGNNCC	2 cut(s)	120, 977
NmeAIII	GCCGAG	1 cut(s)	1168
NmuCI	GTSAC	1 cut(s)	687
NspI	RCATGY	1 cut(s)	752
PdiI	GCCGGC	1 cut(s)	532
PfeI	GAWTC	6 cut(s)	25, 199, 265, 424, 676, 892
PflMI	CCANNNNNTGG	1 cut(s)	985
PleI	GAGTC	4 cut(s)	102, 183, 792, 1360
PpsI	GAGTC	4 cut(s)	102, 183, 792, 1360
PshAI	GACNNNNGTC	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	691
PspEI	GGTNACC	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	120, 977
PspPI	GGNCC	2 cut(s)	772, 1133
PstNI	CAGNNNCTG	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	1019
RsaI	GTAC	4 cut(s)	389, 803, 977, 1066
RsaNI	GTAC	4 cut(s)	388, 802, 976, 1065
RseI	CAYNNNNRTG	1 cut(s)	590
SaqAI	TTAA	2 cut(s)	465, 1275
Sau3AI	GATC	4 cut(s)	7, 722, 856, 1019
Sau96I	GGNCC	2 cut(s)	772, 1133
SchI	GAGTC	4 cut(s)	103, 184, 793, 1361
ScrFI	CCNGG	2 cut(s)	439, 693
SduI	GDGCHC	1 cut(s)	1194
SfaNI	GCATC	2 cut(s)	945, 1039
SfcI	CTRYAG	1 cut(s)	811
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	60, 781
SmoI	CTYRAG	2 cut(s)	60, 781
Sse9I	AATT	8 cut(s)	236, 280, 334, 443, 878, 1152, 1271, 1302
StyD4I	CCNGG	2 cut(s)	437, 691
StyI	CCWWGG	2 cut(s)	135, 491
TaaI	ACNGT	2 cut(s)	123, 417
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	8 cut(s)	28, 263, 427, 605, 725, 792, 1106, 1350
TaqII	GACCGA	1 cut(s)	675
TasI	AATT	8 cut(s)	236, 280, 334, 443, 878, 1152, 1271, 1302
TauI	GCSGC	9 cut(s)	37, 79, 103, 109, 229, 256, 259, 343, 537
TfiI	GAWTC	6 cut(s)	25, 199, 265, 424, 676, 892
Tru1I	TTAA	2 cut(s)	465, 1275
Tru9I	TTAA	2 cut(s)	465, 1275
TseFI	GTSAC	1 cut(s)	687
TseI	GCWGC	5 cut(s)	79, 103, 148, 229, 242
Tsp45I	GTSAC	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	985
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	443, 1271
XceI	RCATGY	1 cut(s)	752
ZraI	GACGTC	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.