Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007381

Physical Location & Seq

Genomic Coordinates Reverse (-)

968296 .. 969657

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAACGATCAGTCAAAGCTGATGAATCAAGCGCCACCGATGATGAGTTTGACCCAAGCTCAACAGCAACAGCAGCAGCAATCTCAGTTGATGATGATGAAGAGTCAGTCTCAGCCGATGATGATGAATCGGAACTACAAGGCTTGGCCACAGCCGCAGCCTCAATTCGCTGCCCAAAAGCCACCGCCGTCTAATCTTGGGCGTAACAATTGGAAGGGCAAGAAGGGTGGAGATAAGAGGAGGATGGACAAGAGTGTCCCCAATTTGTCGCTGAGTGGTCAGACCAGCGGAGGAGGAGGTTACATACCGCCGACGCTTCACGAGTTACAGTCTCAGAATAGAATGAAAGCCCGGAAATTTTACCCGAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATTATTAGAGCGAAGAAGGCCGGCGGCATAGCCTCGCTGGTTTCACCTTGTGCCGTAACTCCGGCTGTTCTGCCCACGCCAATGTTCTCGCCCTCGAGGGAGGTCTTGGGAGATATGGCGAAAGAGGAGTGGGGTATTGATGGGTATGGGTCAATGAAAGGGTTGATTAGGCTTCGGTCACCTGGAAATGATGACGAGGAGGGTGGTGGCGGATCGAGTGAGAGCGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGACTTGAGTCGATTCGAGATGGTGTACCCGAACTACAGCGGGGTTGAGTATAACAATGCTTTGGAGAATAGGGTGGATGATCAGGATACTCATATTGCTCAATTAGAGGAAGAGAATCTGACCTTGAAGGAGAGGCTTTTCTTGATGGAGAGGGAGTTGGCGGATTTGAGAAGGAGGATGCAGTTCATTGAGAGGAGGTACCATGTGATGGGGGAGGTCAATGAAGAGGTGGTGGAAAATGGATCTGAAAATGATAGTGATGGAGGGTCGGATGCCCCTCATATGGGTACCGACGGTGAGAGCAATCCTGAGATGGTAGAGTATGTGTCGAGAGATGGAGGAAGCAGAAGTGTTGGCCCATTGGTCGAGGATGAAATTGTTAGGGATGTTGATGTAGGGATGGAAGAATATGTGCCCGATGAAATGATTTTGAAGGTAAATGAAGCGAATGATGAAACACGAAATGAGTTTGTAGGTAACAAAGAGGTTGAGGAATTTAAGAGTGAGCTTACCCCAGAAGAACTAATTGGAAATAAAAATGAGGTTGAAGATAAGAAAGTGAAGGATGAAGTCGAGTCAAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

48.06

Weight (kDa)

4.98

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19900 AT5G19900 AT5G19900 AT5G19900 AT5G19900
fragaria_vesca	FvH4_3g44330 FvH4_3g44330
malus_domestica	MD03G1014800.v1.1 MD11G1016000.v1.1
prunus_persica	Prupe.6G014100_v2.0.a1
pyrus_communis	pycom03g01240 pycom11g01120
rosa_chinensis	RchiOBHm_Chr5g0080701
rosa_laevigata	RLG00000036887
rosa_multiflora	Rmu_sc0002380.1_g000013 Rmu_sc0027070.1_g000002
rosa_roxburghii	Rroxscaffold_1G00002720
rosa_rugosa	Rorug05G0471700 Rorug05G0471700
rosa_samantha	Rh5AG524800 Rh5BG546900 Rh5CG570300 Rh5DG557100
rosa_wichuraiana	Rw5G048670 Rw5G049240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AatII	GACGTC	1 cut(s)	419
AbsI	CCTCGAGG	1 cut(s)	517
Acc65I	GGTACC	2 cut(s)	888, 977
AccB1I	GGYRCC	2 cut(s)	888, 977
AccB7I	CCANNNNNTGG	1 cut(s)	898
AciI	CCGC	8 cut(s)	155, 185, 288, 308, 447, 633, 729, 851
AclWI	GGATC	2 cut(s)	643, 940
AcoI	YGGCCR	1 cut(s)	146
AcsI	RAATTY	2 cut(s)	356, 1184
AcyI	GRCGYC	1 cut(s)	416
AdeI	CACNNNGTG	1 cut(s)	473
AfaI	GTAC	3 cut(s)	716, 890, 979
AfiI	CCNNNNNNNGG	3 cut(s)	898, 973, 974
AgsI	TTSAA	3 cut(s)	817, 1123, 1238
AjnI	CCWGG	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	1200, 1232
AluBI	AGCT	3 cut(s)	19, 59, 1198
AluI	AGCT	3 cut(s)	19, 59, 1198
Alw26I	GTCTC	2 cut(s)	114, 336
AlwI	GGATC	2 cut(s)	643, 940
Ama87I	CYCGRG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	146, 441, 1045
ApeKI	GCWGC	4 cut(s)	73, 76, 157, 170
ApoI	RAATTY	2 cut(s)	356, 1184
Asp718I	GGTACC	2 cut(s)	888, 977
AspLEI	GCGC	2 cut(s)	34, 394
AspS9I	GGNCC	2 cut(s)	685, 1046
AsuC2I	CCSGG	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	459, 594, 998
AvaI	CYCGRG	1 cut(s)	517
AvaII	GGWCC	1 cut(s)	685
BaeGI	GKGCMC	1 cut(s)	1107
BalI	TGGCCA	1 cut(s)	148
BanI	GGYRCC	2 cut(s)	888, 977
BauI	CACGAG	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	85, 88, 157, 169
BccI	CCATC	9 cut(s)	238, 557, 703, 829, 892, 944, 997, 1019, 1084
BceAI	ACGGC	2 cut(s)	172, 461
BciT130I	CCWGG	1 cut(s)	606
BciVI	GTATCC	1 cut(s)	769
BclI	TGATCA	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	114, 336
BfmI	CTRYAG	1 cut(s)	724
BfoI	RGCGCY	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	6 cut(s)	74, 77, 155, 158, 171, 448
BlsI	GCNGC	6 cut(s)	75, 78, 156, 159, 172, 449
Bme1390I	CCNGG	2 cut(s)	352, 606
Bme18I	GGWCC	1 cut(s)	685
BmeT110I	CYCGRG	1 cut(s)	517
BmgT120I	GGNCC	2 cut(s)	685, 1046
BmiI	GGNNCC	2 cut(s)	890, 979
BmrFI	CCNGG	2 cut(s)	352, 606
BmsI	GCATC	2 cut(s)	858, 952
BoxI	GACNNNNGTC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	94, 126
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	404
BsaXI	ACNNNNNCTCC	4 cut(s)	665, 695, 830, 860
Bsc4I	CCNNNNNNNGG	3 cut(s)	898, 973, 974
Bse118I	RCCGGY	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	8 cut(s)	249, 772, 873, 967, 1066, 1081, 1095, 1261
BseLI	CCNNNNNNNGG	3 cut(s)	898, 973, 974
BseMII	CTCAG	5 cut(s)	98, 125, 263, 347, 990
BseRI	GAGGAG	8 cut(s)	253, 306, 309, 563, 635, 671, 691, 898
BseSI	GKGCMC	1 cut(s)	1107
BseXI	GCAGC	4 cut(s)	85, 88, 157, 169
BshFI	GGCC	3 cut(s)	148, 443, 1047
BshNI	GGYRCC	2 cut(s)	888, 977
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	3 cut(s)	352, 444, 485
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	898, 973, 974
BsmAI	GTCTC	2 cut(s)	114, 336
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	148, 443, 1047
BsoBI	CYCGRG	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	1107
Bsp143I	GATC	4 cut(s)	7, 635, 769, 932
BspACI	CCGC	8 cut(s)	155, 185, 288, 308, 447, 633, 729, 851
BspANI	GGCC	3 cut(s)	148, 443, 1047
BspCNI	CTCAG	5 cut(s)	97, 124, 264, 346, 991
BspLI	GGNNCC	2 cut(s)	890, 979
BspPI	GGATC	2 cut(s)	643, 940
BspT107I	GGYRCC	2 cut(s)	888, 977
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	4 cut(s)	7, 635, 769, 932
BssNI	GRCGYC	1 cut(s)	416
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	330, 986
Bst6I	CTCTTC	3 cut(s)	95, 795, 909
BstACI	GRCGYC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	5 cut(s)	84, 111, 272, 333, 999
BstEII	GGTNACC	1 cut(s)	600
BstF5I	GGATG	8 cut(s)	249, 772, 873, 967, 1066, 1081, 1095, 1261
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 394
BstKTI	GATC	4 cut(s)	10, 638, 772, 935
BstMAI	GTCTC	2 cut(s)	114, 336
BstMBI	GATC	4 cut(s)	7, 635, 769, 932
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 154, 398, 440
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	665
BstPAI	GACNNNNGTC	1 cut(s)	696
BstPI	GGTNACC	1 cut(s)	600
BstSCI	CCNGG	2 cut(s)	350, 604
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	1107
BstV1I	GCAGC	4 cut(s)	85, 88, 157, 169
BstX2I	RGATCY	1 cut(s)	932
BstYI	RGATCY	1 cut(s)	932
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	148, 443, 1047
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	8 cut(s)	249, 772, 873, 967, 1066, 1081, 1095, 1261
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	34, 394
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	685, 1046
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	3 cut(s)	715, 889, 978
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	3 cut(s)	662, 689, 893
CviQI	GTAC	3 cut(s)	715, 889, 978
DdeI	CTNAG	5 cut(s)	84, 111, 272, 333, 999
DpnI	GATC	4 cut(s)	9, 637, 771, 934
DpnII	GATC	4 cut(s)	7, 635, 769, 932
DraIII	CACNNNGTG	1 cut(s)	473
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
EaeI	YGGCCR	1 cut(s)	146
Eam1104I	CTCTTC	3 cut(s)	95, 795, 909
EarI	CTCTTC	3 cut(s)	95, 795, 909
EciI	GGCGGA	2 cut(s)	648, 866
Eco130I	CCWWGG	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	685
Eco88I	CYCGRG	1 cut(s)	517
Eco91I	GGTNACC	1 cut(s)	600
EcoO65I	GGTNACC	1 cut(s)	600
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	665, 692, 896
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	3 cut(s)	661, 688, 892
FauI	CCCGC	1 cut(s)	722
FauNDI	CATATG	1 cut(s)	972
FbaI	TGATCA	1 cut(s)	769
Fnu4HI	GCNGC	6 cut(s)	74, 77, 155, 158, 171, 448
FokI	GGATG	8 cut(s)	256, 779, 880, 974, 1073, 1088, 1102, 1268
Fsp4HI	GCNGC	6 cut(s)	74, 77, 155, 158, 171, 448
GlaI	GCGC	2 cut(s)	33, 393
GluI	GCNGC	6 cut(s)	74, 77, 155, 158, 171, 448
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	148, 443, 1047
HapII	CCGG	3 cut(s)	352, 444, 485
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	2 cut(s)	34, 394
Hin1I	GRCGYC	1 cut(s)	416
Hin1II	CATG	3 cut(s)	665, 692, 896
Hin6I	GCGC	2 cut(s)	32, 392
HinP1I	GCGC	2 cut(s)	32, 392
HinfI	GANTC	7 cut(s)	25, 103, 127, 697, 702, 805, 1265
HpaII	CCGG	3 cut(s)	352, 444, 485
HphI	GGTGA	3 cut(s)	459, 594, 998
Hpy166II	GTNNAC	1 cut(s)	715
Hpy188I	TCNGA	6 cut(s)	132, 282, 336, 810, 937, 961
Hpy188III	TCNNGA	7 cut(s)	320, 706, 773, 832, 998, 1020, 1269
Hpy8I	GTNNAC	1 cut(s)	715
Hpy99I	CGWCG	4 cut(s)	316, 418, 421, 986
HpyAV	CCTTC	7 cut(s)	208, 217, 433, 811, 855, 1117, 1246
HpyCH4III	ACNGT	2 cut(s)	330, 986
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	1 cut(s)	871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 154, 398, 440
HpyF3I	CTNAG	5 cut(s)	84, 111, 272, 333, 999
HpySE526I	ACGT	1 cut(s)	416
Hsp92I	GRCGYC	1 cut(s)	416
Hsp92II	CATG	3 cut(s)	665, 692, 896
HspAI	GCGC	2 cut(s)	32, 392
KpnI	GGTACC	2 cut(s)	892, 981
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	4 cut(s)	7, 635, 769, 932
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	4 cut(s)	85, 88, 157, 169
LweI	GCATC	2 cut(s)	858, 952
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	6 cut(s)	203, 299, 324, 478, 600, 1166
MalI	GATC	4 cut(s)	9, 637, 771, 934
MboI	GATC	4 cut(s)	7, 635, 769, 932
MboII	GAAGA	7 cut(s)	112, 448, 812, 926, 1106, 1220, 1250
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	1 cut(s)	932
MhlI	GDGCHC	1 cut(s)	1107
MlsI	TGGCCA	1 cut(s)	148
MluCI	AATT	8 cut(s)	164, 208, 262, 356, 791, 1065, 1184, 1215
MluNI	TGGCCA	1 cut(s)	148
MlyI	GAGTC	3 cut(s)	112, 706, 1274
MmeI	TCCRAC	2 cut(s)	663, 939
Mox20I	TGGCCA	1 cut(s)	148
MroNI	GCCGGC	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	148
MseI	TTAA	2 cut(s)	378, 1188
MslI	CAYNNNNRTG	1 cut(s)	503
Msp20I	TGGCCA	1 cut(s)	148
MspA1I	CMGCKG	2 cut(s)	288, 729
MspI	CCGG	3 cut(s)	352, 444, 485
MspR9I	CCNGG	2 cut(s)	352, 606
MunI	CAATTG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	4 cut(s)	73, 154, 398, 440
NaeI	GCCGGC	1 cut(s)	445
NciI	CCSGG	1 cut(s)	352
NdeI	CATATG	1 cut(s)	972
NdeII	GATC	4 cut(s)	7, 635, 769, 932
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	3 cut(s)	665, 692, 896
NlaIV	GGNNCC	2 cut(s)	890, 979
NmuCI	GTSAC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	445
PfeI	GAWTC	4 cut(s)	25, 127, 702, 805
PflMI	CCANNNNNTGG	1 cut(s)	898
PkrI	GCNGC	6 cut(s)	75, 78, 156, 159, 172, 449
PleI	GAGTC	3 cut(s)	111, 705, 1273
PpsI	GAGTC	3 cut(s)	111, 705, 1273
PshAI	GACNNNNGTC	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	604
PspEI	GGTNACC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	890, 979
PspPI	GGNCC	2 cut(s)	685, 1046
PspXI	VCTCGAGB	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	932
RsaI	GTAC	3 cut(s)	716, 890, 979
RsaNI	GTAC	3 cut(s)	715, 889, 978
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	2 cut(s)	378, 1188
SatI	GCNGC	6 cut(s)	74, 77, 155, 158, 171, 448
Sau3AI	GATC	4 cut(s)	7, 635, 769, 932
Sau96I	GGNCC	2 cut(s)	685, 1046
SchI	GAGTC	3 cut(s)	112, 706, 1274
ScrFI	CCNGG	2 cut(s)	352, 606
SduI	GDGCHC	1 cut(s)	1107
SfaNI	GCATC	2 cut(s)	858, 952
SfcI	CTRYAG	1 cut(s)	724
Sfr274I	CTCGAG	1 cut(s)	517
SinI	GGWCC	1 cut(s)	685
SlaI	CTCGAG	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	503
SmlI	CTYRAG	2 cut(s)	517, 694
SmoI	CTYRAG	2 cut(s)	517, 694
Sse9I	AATT	8 cut(s)	164, 208, 262, 356, 791, 1065, 1184, 1215
SsiI	CCGC	8 cut(s)	155, 185, 288, 308, 447, 633, 729, 851
StyD4I	CCNGG	2 cut(s)	350, 604
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	330, 986
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	7 cut(s)	518, 638, 700, 705, 1019, 1056, 1263
TaqII	GACCGA	1 cut(s)	588
TasI	AATT	8 cut(s)	164, 208, 262, 356, 791, 1065, 1184, 1215
TauI	GCSGC	2 cut(s)	157, 450
TfiI	GAWTC	4 cut(s)	25, 127, 702, 805
Tru1I	TTAA	2 cut(s)	378, 1188
Tru9I	TTAA	2 cut(s)	378, 1188
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	4 cut(s)	73, 76, 157, 170
Tsp45I	GTSAC	1 cut(s)	600
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	685
XapI	RAATTY	2 cut(s)	356, 1184
XceI	RCATGY	1 cut(s)	665
XhoI	CTCGAG	1 cut(s)	517
ZraI	GACGTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.