RchiOBHm_Chr5g0080701

PRLI-interacting factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0007381
Physical Location & Seq
Forward (+)
86695080 .. 86698968
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35499

Sequence Viewer

Length: 1764 bp
ATGAACGATAAGTCACAGTTGATGAATCAACCCCCACCGCCGCCGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCTCAGCCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTGCTCAGCAGCAACAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGCCGCAGCAGCAGCAGCAGCAACAGTTCGTCGCCGCCCCGAAGCCGGCGCAGTCGAATCTGGGAAGGAACAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGACAAGAACGTTCCCAATTTACCCCTCAGTGGTGGCCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGCGGAGGAGGGTATATACCTCCGACGCTTAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCTTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCCGTGCTCCCCACGCCCATTTTCTCGCCCTCGAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCTCCAGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATCTGAGCCGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACACACATTGCTCAGTTGGAGGAAGAGAATTTGACTTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCACCATGTGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAATGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATAGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGTTTAGGGATGTTTCGATGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACGTAAGAACGAGGGAAGAAGGAATGACCCTGTAGGTGATGGGGTCGTTTCAGAGAAGGTTGAGGAAGTGAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGACAAAGAATGAGAATGAGTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAAGTTATGAGAAATGAAGTTGAGACCAAGCTTGAAAATGAGTTGATGCGCGGTCAGATGAATGCACAGAAGGATGAAGAAATGGGAACTTCATGCACAGAGAATAATAAGACCGAGGGTCAGGTGAAGAATGAAGTTGAGACGAAGAATGAGAGTGAGTTGATGCAGGGTCAGATGAATGCACAGAGGGATGAAGAAATGGGAATTGGCAGCACAGAGAGGAGCATTGGCGTCGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

587

Amino Acids

65.51

Weight (kDa)

4.9

Isoelectric Point (pI)

63.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1379
AatII GACGTC 1 cut(s) 572
AbsI CCTCGAGG 1 cut(s) 670
AccB1I GGYRCC 1 cut(s) 1044
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccII CGCG 1 cut(s) 1572
AclI AACGTT 1 cut(s) 345
AcoI YGGCCR 3 cut(s) 224, 370, 424
AcsI RAATTY 3 cut(s) 509, 961, 1231
AcuI CTGAAG 1 cut(s) 1503
AcyI GRCGYC 2 cut(s) 569, 1752
AdeI CACNNNGTG 1 cut(s) 1051
AfiI CCNNNNNNNGG 5 cut(s) 271, 365, 419, 1054, 1130
AgsI TTSAA 3 cut(s) 973, 1295, 1556
AhdI GACNNNNNGTC 1 cut(s) 1638
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 4 cut(s) 283, 315, 1710, 1742
AloI GAACNNNNNNTCC 2 cut(s) 968, 1000
AluBI AGCT 6 cut(s) 65, 213, 503, 587, 1411, 1552
AluI AGCT 6 cut(s) 65, 213, 503, 587, 1411, 1552
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 4 cut(s) 759, 1424, 1538, 1655
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 3 cut(s) 224, 370, 424
ApoI RAATTY 3 cut(s) 509, 961, 1231
AspLEI GCGC 3 cut(s) 277, 547, 1572
AspS9I GGNCC 1 cut(s) 841
AsuHPI GGTGA 6 cut(s) 643, 1235, 1343, 1426, 1477, 1657
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 1 cut(s) 841
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 2 cut(s) 372, 426
BanI GGYRCC 1 cut(s) 1044
BbsI GAAGAC 2 cut(s) 123, 1491
Bbv12I GWGCWC 1 cut(s) 648
BccI CCATC 8 cut(s) 88, 115, 710, 985, 1048, 1100, 1198, 1328
BceAI ACGGC 3 cut(s) 178, 626, 708
BcgI CGANNNNNNTGC 1 cut(s) 1735
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 1 cut(s) 925
BcoDI GTCTC 4 cut(s) 759, 1424, 1538, 1655
BfmI CTRYAG 1 cut(s) 1326
BfuI GTATCC 1 cut(s) 925
BlpI GCTNAGC 2 cut(s) 99, 156
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 1 cut(s) 841
BmeRI GACNNNNNGTC 1 cut(s) 1638
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 841
BmiI GGNNCC 2 cut(s) 126, 1046
BmrFI CCNGG 1 cut(s) 759
BmsI GCATC 2 cut(s) 1557, 1674
BpiI GAAGAC 2 cut(s) 123, 1491
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 2 cut(s) 741, 929
Bpu1102I GCTNAGC 2 cut(s) 99, 156
BpuEI CTTGAG 4 cut(s) 51, 120, 1033, 1055
BsaHI GRCGYC 2 cut(s) 569, 1752
BsaI GGTCTC 2 cut(s) 759, 1538
BsaJI CCNNGG 4 cut(s) 141, 557, 758, 1635
BsaWI WCCGGW 3 cut(s) 207, 596, 628
BsaXI ACNNNNNCTCC 8 cut(s) 821, 851, 968, 986, 998, 1016, 1073, 1103
Bsc4I CCNNNNNNNGG 5 cut(s) 271, 365, 419, 1054, 1130
Bse118I RCCGGY 2 cut(s) 271, 855
Bse3DI GCAATG 2 cut(s) 939, 1510
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 4 cut(s) 141, 557, 758, 1635
BseGI GGATG 7 cut(s) 721, 928, 1029, 1123, 1201, 1600, 1717
BseLI CCNNNNNNNGG 5 cut(s) 271, 365, 419, 1054, 1130
BseMI GCAATG 2 cut(s) 939, 1510
BseMII CTCAG 9 cut(s) 47, 113, 170, 203, 376, 407, 842, 959, 1398
BseSI GKGCMC 1 cut(s) 1125
Bsh1236I CGCG 1 cut(s) 1572
BshFI GGCC 3 cut(s) 226, 372, 426
BshNI GGYRCC 1 cut(s) 1044
BsiHKAI GWGCWC 1 cut(s) 648
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 5 cut(s) 208, 272, 597, 629, 856
BslFI GGGAC 2 cut(s) 701, 1022
BslI CCNNNNNNNGG 5 cut(s) 271, 365, 419, 1054, 1130
BsmAI GTCTC 4 cut(s) 759, 1424, 1538, 1655
BsmBI CGTCTC 1 cut(s) 1655
BsmFI GGGAC 2 cut(s) 701, 1022
BsmI GAATGC 2 cut(s) 1588, 1705
BsnI GGCC 3 cut(s) 226, 372, 426
Bso31I GGTCTC 2 cut(s) 759, 1538
BsoBI CYCGRG 1 cut(s) 670
Bsp1286I GDGCHC 2 cut(s) 648, 1125
Bsp143I GATC 2 cut(s) 847, 925
Bsp1720I GCTNAGC 2 cut(s) 99, 156
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 3 cut(s) 226, 372, 426
BspCNI CTCAG 9 cut(s) 48, 112, 169, 202, 375, 408, 843, 958, 1399
BspFNI CGCG 1 cut(s) 1572
BspLI GGNNCC 2 cut(s) 126, 1046
BspT107I GGYRCC 1 cut(s) 1044
BspTNI GGTCTC 2 cut(s) 759, 1538
BsrDI GCAATG 2 cut(s) 939, 1510
BsrFI RCCGGY 2 cut(s) 271, 855
BssAI RCCGGY 2 cut(s) 271, 855
BssECI CCNNGG 4 cut(s) 141, 557, 758, 1635
BssMI GATC 2 cut(s) 847, 925
BssNI GRCGYC 2 cut(s) 569, 1752
BssT1I CCWWGG 2 cut(s) 141, 557
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 6 cut(s) 18, 182, 252, 483, 884, 1184
Bst6I CTCTTC 2 cut(s) 951, 1281
BstACI GRCGYC 2 cut(s) 569, 1752
BstC8I GCNNGC 3 cut(s) 80, 273, 1501
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 631
BstF5I GGATG 7 cut(s) 721, 928, 1029, 1123, 1201, 1600, 1717
BstFNI CGCG 1 cut(s) 1572
BstHHI GCGC 3 cut(s) 277, 547, 1572
BstKTI GATC 2 cut(s) 850, 928
BstMAI GTCTC 4 cut(s) 759, 1424, 1538, 1655
BstMBI GATC 2 cut(s) 847, 925
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 821
BstPI GGTNACC 1 cut(s) 631
BstSCI CCNGG 1 cut(s) 757
BstSFI CTRYAG 1 cut(s) 1326
BstSLI GKGCMC 1 cut(s) 1125
BstUI CGCG 1 cut(s) 1572
BstV2I GAAGAC 2 cut(s) 123, 1491
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 3 cut(s) 226, 372, 426
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 7 cut(s) 721, 928, 1029, 1123, 1201, 1600, 1717
BtsIMutI CAGTG 2 cut(s) 370, 889
Cac8I GCNNGC 3 cut(s) 80, 273, 1501
CfoI GCGC 3 cut(s) 277, 547, 1572
Cfr10I RCCGGY 2 cut(s) 271, 855
Cfr13I GGNCC 1 cut(s) 841
CseI GACGC 2 cut(s) 475, 1741
CviAII CATG 8 cut(s) 73, 142, 818, 845, 1049, 1220, 1489, 1614
DpnI GATC 2 cut(s) 849, 927
DpnII GATC 2 cut(s) 847, 925
DraI TTTAAA 1 cut(s) 1236
DraIII CACNNNGTG 1 cut(s) 1051
DriI GACNNNNNGTC 1 cut(s) 1638
EaeI YGGCCR 3 cut(s) 224, 370, 424
Eam1104I CTCTTC 2 cut(s) 951, 1281
Eam1105I GACNNNNNGTC 1 cut(s) 1638
EarI CTCTTC 2 cut(s) 951, 1281
EciI GGCGGA 1 cut(s) 459
Eco130I CCWWGG 2 cut(s) 141, 557
Eco31I GGTCTC 2 cut(s) 759, 1538
Eco47I GGWCC 1 cut(s) 841
Eco57I CTGAAG 1 cut(s) 1503
Eco88I CYCGRG 1 cut(s) 670
Eco91I GGTNACC 1 cut(s) 631
EcoO65I GGTNACC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 141, 557
ErhI CCWWGG 2 cut(s) 141, 557
Esp3I CGTCTC 1 cut(s) 1655
FaeI CATG 8 cut(s) 76, 145, 821, 848, 1052, 1223, 1492, 1617
FaqI GGGAC 2 cut(s) 701, 1022
FatI CATG 8 cut(s) 72, 141, 817, 844, 1048, 1219, 1488, 1613
FauNDI CATATG 1 cut(s) 1128
FbaI TGATCA 1 cut(s) 925
FokI GGATG 7 cut(s) 728, 935, 1036, 1130, 1208, 1607, 1724
GlaI GCGC 3 cut(s) 276, 546, 1571
GsuI CTGGAG 2 cut(s) 741, 929
HaeIII GGCC 3 cut(s) 226, 372, 426
HapII CCGG 5 cut(s) 208, 272, 597, 629, 856
HgaI GACGC 2 cut(s) 475, 1741
HhaI GCGC 3 cut(s) 277, 547, 1572
Hin1I GRCGYC 2 cut(s) 569, 1752
Hin1II CATG 8 cut(s) 76, 145, 821, 848, 1052, 1223, 1492, 1617
Hin6I GCGC 3 cut(s) 275, 545, 1570
HinP1I GCGC 3 cut(s) 275, 545, 1570
HindIII AAGCTT 1 cut(s) 1550
HinfI GANTC 5 cut(s) 25, 52, 283, 490, 742
HpaII CCGG 5 cut(s) 208, 272, 597, 629, 856
HphI GGTGA 6 cut(s) 643, 1235, 1343, 1426, 1477, 1657
Hpy166II GTNNAC 1 cut(s) 1468
Hpy188I TCNGA 9 cut(s) 57, 465, 507, 852, 1093, 1117, 1348, 1578, 1695
Hpy188III TCNNGA 5 cut(s) 862, 929, 988, 1034, 1176
Hpy8I GTNNAC 1 cut(s) 1468
Hpy99I CGWCG 5 cut(s) 260, 469, 571, 574, 1757
HpyAV CCTTC 9 cut(s) 285, 298, 307, 691, 967, 1308, 1345, 1471, 1585
HpyCH4III ACNGT 6 cut(s) 18, 182, 252, 483, 884, 1184
HpyCH4IV ACGT 3 cut(s) 345, 569, 1297
HpyCH4V TGCA 8 cut(s) 1219, 1397, 1456, 1503, 1586, 1617, 1687, 1703
HpySE526I ACGT 3 cut(s) 345, 569, 1297
Hsp92I GRCGYC 2 cut(s) 569, 1752
Hsp92II CATG 8 cut(s) 76, 145, 821, 848, 1052, 1223, 1492, 1617
HspAI GCGC 3 cut(s) 275, 545, 1570
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 925
Kzo9I GATC 2 cut(s) 847, 925
LmnI GCTCC 5 cut(s) 130, 210, 651, 814, 1743
LweI GCATC 2 cut(s) 1557, 1674
MaeII ACGT 3 cut(s) 345, 569, 1297
MaeIII GTNAC 5 cut(s) 12, 477, 483, 631, 1757
MalI GATC 2 cut(s) 849, 927
MboI GATC 2 cut(s) 847, 925
MfeI CAATTG 1 cut(s) 298
MhlI GDGCHC 2 cut(s) 648, 1125
MlsI TGGCCA 2 cut(s) 372, 426
MluNI TGGCCA 2 cut(s) 372, 426
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 5 cut(s) 488, 819, 930, 1071, 1095
Mox20I TGGCCA 2 cut(s) 372, 426
MroNI GCCGGC 1 cut(s) 271
MscI TGGCCA 2 cut(s) 372, 426
MseI TTAA 4 cut(s) 471, 531, 1065, 1235
MslI CAYNNNNRTG 1 cut(s) 1157
Msp20I TGGCCA 2 cut(s) 372, 426
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 5 cut(s) 208, 272, 597, 629, 856
MspR9I CCNGG 1 cut(s) 759
MunI CAATTG 1 cut(s) 298
Mva1269I GAATGC 2 cut(s) 1588, 1705
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 1572
NaeI GCCGGC 1 cut(s) 273
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 1128
NdeII GATC 2 cut(s) 847, 925
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 8 cut(s) 76, 145, 821, 848, 1052, 1223, 1492, 1617
NlaIV GGNNCC 2 cut(s) 126, 1046
NmuCI GTSAC 4 cut(s) 12, 483, 631, 1757
NspI RCATGY 1 cut(s) 821
PaeR7I CTCGAG 1 cut(s) 670
PctI GAATGC 2 cut(s) 1588, 1705
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 25, 283, 490, 742
PflMI CCANNNNNTGG 1 cut(s) 1054
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PsiI TTATAA 1 cut(s) 1379
Psp1406I AACGTT 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 631
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 2 cut(s) 126, 1046
PspPI GGNCC 1 cut(s) 841
PspXI VCTCGAGB 1 cut(s) 670
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
RseI CAYNNNNRTG 1 cut(s) 1157
SaqAI TTAA 4 cut(s) 471, 531, 1065, 1235
Sau3AI GATC 2 cut(s) 847, 925
Sau96I GGNCC 1 cut(s) 841
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 2 cut(s) 648, 1125
SfaNI GCATC 2 cut(s) 1557, 1674
SfcI CTRYAG 1 cut(s) 1326
Sfr274I CTCGAG 1 cut(s) 670
SinI GGWCC 1 cut(s) 841
SlaI CTCGAG 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 1157
SmlI CTYRAG 5 cut(s) 66, 135, 670, 1012, 1034
SmoI CTYRAG 5 cut(s) 66, 135, 670, 1012, 1034
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 2 cut(s) 141, 557
TaaI ACNGT 6 cut(s) 18, 182, 252, 483, 884, 1184
TaiI ACGT 3 cut(s) 348, 572, 1300
TaqI TCGA 7 cut(s) 281, 493, 671, 728, 794, 861, 1202
TaqII GACCGA 2 cut(s) 741, 1649
TfiI GAWTC 4 cut(s) 25, 283, 490, 742
Tru1I TTAA 4 cut(s) 471, 531, 1065, 1235
Tru9I TTAA 4 cut(s) 471, 531, 1065, 1235
TscAI CASTG 2 cut(s) 370, 889
TseFI GTSAC 4 cut(s) 12, 483, 631, 1757
Tsp45I GTSAC 4 cut(s) 12, 483, 631, 1757
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 2 cut(s) 370, 889
Van91I CCANNNNNTGG 1 cut(s) 1054
VpaK11BI GGWCC 1 cut(s) 841
XapI RAATTY 3 cut(s) 509, 961, 1231
XceI RCATGY 1 cut(s) 821
XhoI CTCGAG 1 cut(s) 670
ZraI GACGTC 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.