Rh5DG557100

PRLI-interacting factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007381
Physical Location & Seq
Forward (+)
85902974 .. 85904734
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG557100.1

Sequence Viewer

Length: 1761 bp
ATGAACGATAAGTCACAGTTGATGAATCAACCCCCGCCGCCGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCTCAGCCGCCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTCAACAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGCCGCAGCAGCAGCAGCAGCAACAGTTCGTCGCCGCCCAGAAGCCGCCGCAGTCGTATCTGGGAAGGAATAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGAGAAAAACGTTCCCAATTTGCCCCTGAGCGGTGGCCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGAGGAGGAGGAGGGTATATACCTCCGACGCTAAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCTTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCCGTGCTCCCCACGCCCATTTTCTCGCCGTCGAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGATCGATGAAAGGGTTGATTCGGCTTCGGTCTCCCGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATTTGAGCCGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACACACATTGCTCAGTTGGAGGAAGAGAATTTGACTTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCACCATGTGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAACGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATAGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGGTTAGGGATGTTTCGCTGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACGTAAGAACGAGGGAAGAAGGAATGACCTTGTAGGTGATGGGGTCGTTTCAGAGAAGGTTGAGGAAGTGAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGACAAAGAATGAGAATGAGTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGATGAAGACATGATAATTGCCTGCAATGAGAAGAACGAAACTAAGGTTATGAGGAATGAAGTTGAGACTAAGATTGAAAATGAGTTGATGCGCGGTCAGATGAATGCAGAGAAGGATGAAGAAATGGGAACTTCATGTACAGAGAATAATAAGACCGAGGGTCAGGTGAAGAATGAAGTTGAGACGAAGAATGAGAGTGAGTTGATGCAGTGTCAGACGAATGCACAGAGGGATGAAGAAATGGGAATTGCCAGCACAGAGAAGAGCATTGGCGTCGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

586

Amino Acids

65.44

Weight (kDa)

4.86

Isoelectric Point (pI)

62.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1373
AatII GACGTC 1 cut(s) 566
AccB1I GGYRCC 1 cut(s) 1038
AccB7I CCANNNNNTGG 1 cut(s) 1048
AccBSI CCGCTC 1 cut(s) 357
AccII CGCG 1 cut(s) 1569
AclI AACGTT 1 cut(s) 336
AclWI GGATC 1 cut(s) 727
AcoI YGGCCR 3 cut(s) 215, 361, 415
AcsI RAATTY 3 cut(s) 503, 955, 1225
AcyI GRCGYC 2 cut(s) 563, 1749
AdeI CACNNNGTG 1 cut(s) 1045
AfaI GTAC 1 cut(s) 1615
AfiI CCNNNNNNNGG 4 cut(s) 356, 410, 1048, 1124
AgsI TTSAA 3 cut(s) 967, 1289, 1553
AhdI GACNNNNNGTC 1 cut(s) 1635
AjuI GAANNNNNNNTTGG 2 cut(s) 274, 306
AloI GAACNNNNNNTCC 2 cut(s) 962, 994
AluBI AGCT 5 cut(s) 62, 204, 497, 581, 1405
AluI AGCT 5 cut(s) 62, 204, 497, 581, 1405
Alw21I GWGCWC 1 cut(s) 642
Alw26I GTCTC 4 cut(s) 753, 1418, 1535, 1652
AlwI GGATC 1 cut(s) 727
Ama87I CYCGRG 1 cut(s) 752
AoxI GGCC 3 cut(s) 215, 361, 415
ApeKI GCWGC 8 cut(s) 146, 149, 223, 226, 229, 232, 235, 423
ApoI RAATTY 3 cut(s) 503, 955, 1225
AspLEI GCGC 2 cut(s) 541, 1569
AspS9I GGNCC 1 cut(s) 835
AsuC2I CCSGG 2 cut(s) 753, 754
AsuHPI GGTGA 6 cut(s) 637, 1229, 1337, 1420, 1471, 1654
AvaI CYCGRG 1 cut(s) 752
AvaII GGWCC 1 cut(s) 835
BaeGI GKGCMC 1 cut(s) 1119
BalI TGGCCA 2 cut(s) 363, 417
BanI GGYRCC 1 cut(s) 1038
BbsI GAAGAC 2 cut(s) 123, 1488
Bbv12I GWGCWC 1 cut(s) 642
BbvI GCAGC 8 cut(s) 133, 136, 235, 238, 241, 244, 247, 435
BccI CCATC 7 cut(s) 85, 115, 704, 979, 1042, 1094, 1322
BceAI ACGGC 4 cut(s) 169, 620, 646, 702
BcgI CGANNNNNNTGC 1 cut(s) 1732
BciVI GTATCC 1 cut(s) 919
BclI TGATCA 1 cut(s) 919
BcnI CCSGG 2 cut(s) 753, 754
BcoDI GTCTC 4 cut(s) 753, 1418, 1535, 1652
BfuI GTATCC 1 cut(s) 919
BlpI GCTNAGC 1 cut(s) 96
Bme1390I CCNGG 2 cut(s) 753, 754
Bme18I GGWCC 1 cut(s) 835
BmeRI GACNNNNNGTC 1 cut(s) 1635
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 1 cut(s) 835
BmiI GGNNCC 2 cut(s) 126, 1040
BmrFI CCNGG 2 cut(s) 753, 754
BmsI GCATC 2 cut(s) 1554, 1671
BpiI GAAGAC 2 cut(s) 123, 1488
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 923
Bpu10I CCTNAGC 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 4 cut(s) 48, 120, 1027, 1049
BpuMI CCSGG 2 cut(s) 753, 754
Bsa29I ATCGAT 1 cut(s) 722
BsaHI GRCGYC 2 cut(s) 563, 1749
BsaI GGTCTC 1 cut(s) 753
BsaJI CCNNGG 4 cut(s) 141, 551, 752, 1632
BsaWI WCCGGW 3 cut(s) 198, 590, 622
BsaXI ACNNNNNCTCC 8 cut(s) 815, 845, 962, 980, 992, 1010, 1067, 1097
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 410, 1048, 1124
Bse118I RCCGGY 1 cut(s) 849
Bse3DI GCAATG 2 cut(s) 933, 1507
BseCI ATCGAT 1 cut(s) 722
BseDI CCNNGG 4 cut(s) 141, 551, 752, 1632
BseGI GGATG 7 cut(s) 715, 922, 1023, 1117, 1195, 1597, 1714
BseLI CCNNNNNNNGG 4 cut(s) 356, 410, 1048, 1124
BseMI GCAATG 2 cut(s) 933, 1507
BseMII CTCAG 7 cut(s) 44, 110, 194, 344, 398, 953, 1392
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 8 cut(s) 133, 136, 235, 238, 241, 244, 247, 435
Bsh1236I CGCG 1 cut(s) 1569
BshFI GGCC 3 cut(s) 217, 363, 417
BshNI GGYRCC 1 cut(s) 1038
BshVI ATCGAT 1 cut(s) 722
BsiHKAI GWGCWC 1 cut(s) 642
BsiHKCI CYCGRG 1 cut(s) 752
BsiSI CCGG 5 cut(s) 199, 591, 623, 753, 850
BslFI GGGAC 2 cut(s) 695, 1016
BslI CCNNNNNNNGG 4 cut(s) 356, 410, 1048, 1124
BsmAI GTCTC 4 cut(s) 753, 1418, 1535, 1652
BsmBI CGTCTC 1 cut(s) 1652
BsmFI GGGAC 2 cut(s) 695, 1016
BsmI GAATGC 2 cut(s) 1585, 1702
BsnI GGCC 3 cut(s) 217, 363, 417
Bso31I GGTCTC 1 cut(s) 753
BsoBI CYCGRG 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 642, 1119
Bsp1407I TGTACA 1 cut(s) 1613
Bsp143I GATC 2 cut(s) 719, 919
Bsp1720I GCTNAGC 1 cut(s) 96
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 3 cut(s) 217, 363, 417
BspCNI CTCAG 7 cut(s) 45, 109, 193, 345, 399, 952, 1393
BspDI ATCGAT 1 cut(s) 722
BspFNI CGCG 1 cut(s) 1569
BspLI GGNNCC 2 cut(s) 126, 1040
BspPI GGATC 1 cut(s) 727
BspQI GCTCTTC 1 cut(s) 1733
BspT107I GGYRCC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 753
BsrBI CCGCTC 1 cut(s) 357
BsrDI GCAATG 2 cut(s) 933, 1507
BsrFI RCCGGY 1 cut(s) 849
BsrGI TGTACA 1 cut(s) 1613
BssAI RCCGGY 1 cut(s) 849
BssECI CCNNGG 4 cut(s) 141, 551, 752, 1632
BssMI GATC 2 cut(s) 719, 919
BssNI GRCGYC 2 cut(s) 563, 1749
BssT1I CCWWGG 2 cut(s) 141, 551
Bst4CI ACNGT 6 cut(s) 18, 173, 243, 477, 878, 1178
Bst6I CTCTTC 3 cut(s) 945, 1275, 1733
BstACI GRCGYC 2 cut(s) 563, 1749
BstAUI TGTACA 1 cut(s) 1613
BstC8I GCNNGC 3 cut(s) 77, 1498, 1729
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 625
BstF5I GGATG 7 cut(s) 715, 922, 1023, 1117, 1195, 1597, 1714
BstFNI CGCG 1 cut(s) 1569
BstHHI GCGC 2 cut(s) 541, 1569
BstKTI GATC 2 cut(s) 722, 922
BstMAI GTCTC 4 cut(s) 753, 1418, 1535, 1652
BstMBI GATC 2 cut(s) 719, 919
BstNSI RCATGY 1 cut(s) 815
BstPI GGTNACC 1 cut(s) 625
BstSCI CCNGG 2 cut(s) 751, 752
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 1 cut(s) 1569
BstV1I GCAGC 8 cut(s) 133, 136, 235, 238, 241, 244, 247, 435
BstV2I GAAGAC 2 cut(s) 123, 1488
Bsu15I ATCGAT 1 cut(s) 722
BsuI GTATCC 1 cut(s) 919
BsuRI GGCC 3 cut(s) 217, 363, 417
BsuTUI ATCGAT 1 cut(s) 722
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 7 cut(s) 715, 922, 1023, 1117, 1195, 1597, 1714
BtsI GCAGTG 1 cut(s) 1691
BtsIMutI CAGTG 2 cut(s) 883, 1691
Cac8I GCNNGC 3 cut(s) 77, 1498, 1729
CfoI GCGC 2 cut(s) 541, 1569
Cfr10I RCCGGY 1 cut(s) 849
Cfr13I GGNCC 1 cut(s) 835
Cfr9I CCCGGG 1 cut(s) 752
ClaI ATCGAT 1 cut(s) 722
CseI GACGC 2 cut(s) 469, 1738
Csp6I GTAC 1 cut(s) 1614
CviAII CATG 8 cut(s) 70, 142, 812, 839, 1043, 1214, 1486, 1611
CviQI GTAC 1 cut(s) 1614
DpnI GATC 2 cut(s) 721, 921
DpnII GATC 2 cut(s) 719, 919
DraI TTTAAA 1 cut(s) 1230
DraIII CACNNNGTG 1 cut(s) 1045
DriI GACNNNNNGTC 1 cut(s) 1635
EaeI YGGCCR 3 cut(s) 215, 361, 415
Eam1104I CTCTTC 3 cut(s) 945, 1275, 1733
Eam1105I GACNNNNNGTC 1 cut(s) 1635
EarI CTCTTC 3 cut(s) 945, 1275, 1733
Eco130I CCWWGG 2 cut(s) 141, 551
Eco31I GGTCTC 1 cut(s) 753
Eco47I GGWCC 1 cut(s) 835
Eco88I CYCGRG 1 cut(s) 752
Eco91I GGTNACC 1 cut(s) 625
EcoO65I GGTNACC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 141, 551
ErhI CCWWGG 2 cut(s) 141, 551
Esp3I CGTCTC 1 cut(s) 1652
FaeI CATG 8 cut(s) 73, 145, 815, 842, 1046, 1217, 1489, 1614
FaqI GGGAC 2 cut(s) 695, 1016
FatI CATG 8 cut(s) 69, 141, 811, 838, 1042, 1213, 1485, 1610
FauI CCCGC 1 cut(s) 42
FauNDI CATATG 1 cut(s) 1122
FbaI TGATCA 1 cut(s) 919
FokI GGATG 7 cut(s) 722, 929, 1030, 1124, 1202, 1604, 1721
GlaI GCGC 2 cut(s) 540, 1568
GsuI CTGGAG 1 cut(s) 923
HaeIII GGCC 3 cut(s) 217, 363, 417
HapII CCGG 5 cut(s) 199, 591, 623, 753, 850
HgaI GACGC 2 cut(s) 469, 1738
HhaI GCGC 2 cut(s) 541, 1569
Hin1I GRCGYC 2 cut(s) 563, 1749
Hin1II CATG 8 cut(s) 73, 145, 815, 842, 1046, 1217, 1489, 1614
Hin6I GCGC 2 cut(s) 539, 1567
HinP1I GCGC 2 cut(s) 539, 1567
HinfI GANTC 4 cut(s) 25, 49, 484, 736
HpaII CCGG 5 cut(s) 199, 591, 623, 753, 850
HphI GGTGA 6 cut(s) 637, 1229, 1337, 1420, 1471, 1654
Hpy166II GTNNAC 1 cut(s) 1462
Hpy188I TCNGA 8 cut(s) 54, 459, 501, 1087, 1111, 1342, 1575, 1692
Hpy188III TCNNGA 5 cut(s) 856, 923, 982, 1028, 1170
Hpy8I GTNNAC 1 cut(s) 1462
Hpy99I CGWCG 6 cut(s) 251, 463, 565, 568, 667, 1754
HpyAV CCTTC 9 cut(s) 276, 289, 298, 685, 961, 1302, 1339, 1465, 1582
HpyCH4III ACNGT 6 cut(s) 18, 173, 243, 477, 878, 1178
HpyCH4IV ACGT 3 cut(s) 336, 563, 1291
HpyCH4V TGCA 7 cut(s) 1213, 1391, 1450, 1500, 1583, 1684, 1700
HpySE526I ACGT 3 cut(s) 336, 563, 1291
Hsp92I GRCGYC 2 cut(s) 563, 1749
Hsp92II CATG 8 cut(s) 73, 145, 815, 842, 1046, 1217, 1489, 1614
HspAI GCGC 2 cut(s) 539, 1567
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 2 cut(s) 719, 919
LguI GCTCTTC 1 cut(s) 1733
LmnI GCTCC 4 cut(s) 130, 201, 645, 808
Lsp1109I GCAGC 8 cut(s) 133, 136, 235, 238, 241, 244, 247, 435
LweI GCATC 2 cut(s) 1554, 1671
MaeII ACGT 3 cut(s) 336, 563, 1291
MaeIII GTNAC 5 cut(s) 12, 471, 477, 625, 1754
MalI GATC 2 cut(s) 721, 921
MbiI CCGCTC 1 cut(s) 357
MboI GATC 2 cut(s) 719, 919
MhlI GDGCHC 2 cut(s) 642, 1119
MlsI TGGCCA 2 cut(s) 363, 417
MluNI TGGCCA 2 cut(s) 363, 417
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 5 cut(s) 482, 813, 924, 1065, 1089
Mox20I TGGCCA 2 cut(s) 363, 417
MscI TGGCCA 2 cut(s) 363, 417
MseI TTAA 3 cut(s) 525, 1059, 1229
MslI CAYNNNNRTG 1 cut(s) 1151
Msp20I TGGCCA 2 cut(s) 363, 417
MspA1I CMGCKG 1 cut(s) 426
MspI CCGG 5 cut(s) 199, 591, 623, 753, 850
MspR9I CCNGG 2 cut(s) 753, 754
Mva1269I GAATGC 2 cut(s) 1585, 1702
MvnI CGCG 1 cut(s) 1569
NciI CCSGG 2 cut(s) 753, 754
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 1122
NdeII GATC 2 cut(s) 719, 919
NlaIII CATG 8 cut(s) 73, 145, 815, 842, 1046, 1217, 1489, 1614
NlaIV GGNNCC 2 cut(s) 126, 1040
NmuCI GTSAC 4 cut(s) 12, 477, 625, 1754
NspI RCATGY 1 cut(s) 815
PciSI GCTCTTC 1 cut(s) 1733
PctI GAATGC 2 cut(s) 1585, 1702
PfeI GAWTC 3 cut(s) 25, 484, 736
PflMI CCANNNNNTGG 1 cut(s) 1048
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PsiI TTATAA 1 cut(s) 1373
Psp1406I AACGTT 1 cut(s) 336
PspEI GGTNACC 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 126, 1040
PspPI GGNCC 1 cut(s) 835
PsrI GAACNNNNNNTAC 4 cut(s) 188, 220, 1597, 1629
RsaI GTAC 1 cut(s) 1615
RsaNI GTAC 1 cut(s) 1614
RseI CAYNNNNRTG 1 cut(s) 1151
SapI GCTCTTC 1 cut(s) 1733
SaqAI TTAA 3 cut(s) 525, 1059, 1229
Sau3AI GATC 2 cut(s) 719, 919
Sau96I GGNCC 1 cut(s) 835
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 753, 754
SduI GDGCHC 2 cut(s) 642, 1119
SfaNI GCATC 2 cut(s) 1554, 1671
SinI GGWCC 1 cut(s) 835
SmaI CCCGGG 1 cut(s) 754
SmiMI CAYNNNNRTG 1 cut(s) 1151
SmlI CTYRAG 4 cut(s) 63, 135, 1006, 1028
SmoI CTYRAG 4 cut(s) 63, 135, 1006, 1028
StyD4I CCNGG 2 cut(s) 751, 752
StyI CCWWGG 2 cut(s) 141, 551
TaaI ACNGT 6 cut(s) 18, 173, 243, 477, 878, 1178
TaiI ACGT 3 cut(s) 339, 566, 1294
TaqI TCGA 5 cut(s) 487, 665, 722, 788, 855
TaqII GACCGA 2 cut(s) 735, 1646
TatI WGTACW 1 cut(s) 1613
TfiI GAWTC 3 cut(s) 25, 484, 736
Tru1I TTAA 3 cut(s) 525, 1059, 1229
Tru9I TTAA 3 cut(s) 525, 1059, 1229
TscAI CASTG 2 cut(s) 883, 1691
TseFI GTSAC 4 cut(s) 12, 477, 625, 1754
TseI GCWGC 8 cut(s) 146, 149, 223, 226, 229, 232, 235, 423
Tsp45I GTSAC 4 cut(s) 12, 477, 625, 1754
TspGWI ACGGA 1 cut(s) 117
TspMI CCCGGG 1 cut(s) 752
TspRI CASTG 2 cut(s) 883, 1691
Van91I CCANNNNNTGG 1 cut(s) 1048
VpaK11BI GGWCC 1 cut(s) 835
XapI RAATTY 3 cut(s) 503, 955, 1225
XceI RCATGY 1 cut(s) 815
XmaI CCCGGG 1 cut(s) 752
ZraI GACGTC 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.