Rw5G048670

PRLI-interacting factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007381
Physical Location & Seq
Forward (+)
84575555 .. 84578802
3248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048670.1

Sequence Viewer

Length: 1773 bp
ATGAACGATAAGTCACAGTTGATGAATCAACCCCCACCGCCGCCGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCACAGCCGCCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTGCTGCTGCTGCTCAGCAGCAACAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGCTGCAGCAGCAGCAGCAGCCGCAACAGTTCGTCGCCGCCCAGAAGCCGCCGCAGTCGAATCTGGGAAGGAACAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGAAAAGAACGTTCCCAATTTACCCCTCAGTGGTGGCCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGCGGAGGAGGGTATATACCTCCGACGCTTAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCTTCGCTGGTTTCGCCTTGCCCGGTGACCCCTGCCGTGCTCCCCACGCCCATTTTCTCGCCGTCGAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCTCCCGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGATTGGACCATGATCTGAGCCGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACCCACATTGCTCAGCTGGAGGAAGAGAATTTGACTTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCAGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAATGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATAGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGTTTGGGGATGTTTCGATGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTAATGAAGAGATTGAACGTAAGAACGAGGGAATAAGGAATGACCTTGTAGGTGATGGGGTCGTTTCAGAGAAGGTTGAGGAAGTGAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGAGAAAGAATGAGAATGAGTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAAGTTATGAGAAATGAAGTTGAGACCAAGCTTGAAAATGAGTTGATGCGCGGTCAGATGAATGCACAGAAGGATGAAGAAATGGGAACTTCATGCACAGAGAATAATAAGACCGAGGGTCAGGTGAAGAATGAAGTTGAGACGAAGAATGAGAGTGAGTTGATGCAGGGTCAGATGAATGCACAGAGGGATGAAGAAATGGGAATTGGCAGCACAGAGAAGAGCATTGGCGTCGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

590

Amino Acids

65.66

Weight (kDa)

4.83

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1388
AatII GACGTC 1 cut(s) 587
AccII CGCG 1 cut(s) 1581
AclI AACGTT 1 cut(s) 360
AcoI YGGCCR 3 cut(s) 236, 385, 439
AcsI RAATTY 3 cut(s) 524, 976, 1240
AcuI CTGAAG 1 cut(s) 1512
AcyI GRCGYC 2 cut(s) 584, 1761
AfiI CCNNNNNNNGG 3 cut(s) 380, 434, 1139
AgsI TTSAA 3 cut(s) 988, 1304, 1565
AhdI GACNNNNNGTC 1 cut(s) 1647
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 1719, 1751
AloI GAACNNNNNNTCC 2 cut(s) 983, 1015
AluBI AGCT 7 cut(s) 65, 225, 518, 602, 964, 1420, 1561
AluI AGCT 7 cut(s) 65, 225, 518, 602, 964, 1420, 1561
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 3 cut(s) 774, 1547, 1664
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 3 cut(s) 236, 385, 439
ApoI RAATTY 3 cut(s) 524, 976, 1240
AspLEI GCGC 2 cut(s) 562, 1581
AspS9I GGNCC 1 cut(s) 856
AsuC2I CCSGG 3 cut(s) 644, 774, 775
AsuHPI GGTGA 6 cut(s) 658, 1244, 1352, 1435, 1486, 1666
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 1 cut(s) 856
BaeGI GKGCMC 1 cut(s) 1134
BalI TGGCCA 2 cut(s) 387, 441
BbsI GAAGAC 2 cut(s) 126, 1500
Bbv12I GWGCWC 1 cut(s) 663
BccI CCATC 8 cut(s) 88, 118, 725, 1000, 1057, 1109, 1207, 1337
BceAI ACGGC 4 cut(s) 190, 641, 667, 723
BcgI CGANNNNNNTGC 1 cut(s) 1744
BciVI GTATCC 1 cut(s) 940
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 3 cut(s) 644, 774, 775
BcoDI GTCTC 3 cut(s) 774, 1547, 1664
BfmI CTRYAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 940
BlpI GCTNAGC 2 cut(s) 168, 960
Bme1390I CCNGG 3 cut(s) 644, 774, 775
Bme18I GGWCC 1 cut(s) 856
BmeRI GACNNNNNGTC 1 cut(s) 1647
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 1 cut(s) 856
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 3 cut(s) 644, 774, 775
BmsI GCATC 2 cut(s) 1566, 1683
BpiI GAAGAC 2 cut(s) 126, 1500
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 2 cut(s) 944, 986
Bpu1102I GCTNAGC 2 cut(s) 168, 960
BpuEI CTTGAG 4 cut(s) 51, 123, 1048, 1070
BpuMI CCSGG 3 cut(s) 644, 774, 775
BsaHI GRCGYC 2 cut(s) 584, 1761
BsaI GGTCTC 2 cut(s) 774, 1547
BsaJI CCNNGG 4 cut(s) 144, 572, 773, 1644
BsaWI WCCGGW 2 cut(s) 219, 611
BsaXI ACNNNNNCTCC 6 cut(s) 983, 1001, 1013, 1031, 1082, 1112
Bsc4I CCNNNNNNNGG 3 cut(s) 380, 434, 1139
Bse118I RCCGGY 1 cut(s) 870
Bse3DI GCAATG 2 cut(s) 954, 1519
BseDI CCNNGG 4 cut(s) 144, 572, 773, 1644
BseGI GGATG 7 cut(s) 736, 943, 1044, 1132, 1210, 1609, 1726
BseLI CCNNNNNNNGG 3 cut(s) 380, 434, 1139
BseMI GCAATG 2 cut(s) 954, 1519
BseMII CTCAG 8 cut(s) 47, 182, 215, 391, 422, 857, 974, 1407
BseSI GKGCMC 1 cut(s) 1134
Bsh1236I CGCG 1 cut(s) 1581
BshFI GGCC 3 cut(s) 238, 387, 441
BsiHKAI GWGCWC 1 cut(s) 663
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 5 cut(s) 220, 612, 644, 774, 871
BslFI GGGAC 2 cut(s) 716, 1037
BslI CCNNNNNNNGG 3 cut(s) 380, 434, 1139
BsmAI GTCTC 3 cut(s) 774, 1547, 1664
BsmBI CGTCTC 1 cut(s) 1664
BsmFI GGGAC 2 cut(s) 716, 1037
BsmI GAATGC 2 cut(s) 1597, 1714
BsnI GGCC 3 cut(s) 238, 387, 441
Bso31I GGTCTC 2 cut(s) 774, 1547
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 2 cut(s) 663, 1134
Bsp143I GATC 2 cut(s) 862, 940
Bsp1720I GCTNAGC 2 cut(s) 168, 960
Bsp19I CCATGG 1 cut(s) 144
BspANI GGCC 3 cut(s) 238, 387, 441
BspCNI CTCAG 8 cut(s) 48, 181, 214, 390, 423, 858, 973, 1408
BspFNI CGCG 1 cut(s) 1581
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 246
BspQI GCTCTTC 1 cut(s) 1745
BspTNI GGTCTC 2 cut(s) 774, 1547
BsrDI GCAATG 2 cut(s) 954, 1519
BsrFI RCCGGY 1 cut(s) 870
BssAI RCCGGY 1 cut(s) 870
BssECI CCNNGG 4 cut(s) 144, 572, 773, 1644
BssMI GATC 2 cut(s) 862, 940
BssNI GRCGYC 2 cut(s) 584, 1761
BssT1I CCWWGG 2 cut(s) 144, 572
Bst4CI ACNGT 6 cut(s) 18, 194, 267, 498, 899, 1193
Bst6I CTCTTC 3 cut(s) 966, 1290, 1745
BstACI GRCGYC 2 cut(s) 584, 1761
BstC8I GCNNGC 2 cut(s) 80, 1510
BstDEI CTNAG 9 cut(s) 56, 168, 201, 377, 431, 603, 866, 960, 1416
BstDSI CCRYGG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 646
BstF5I GGATG 7 cut(s) 736, 943, 1044, 1132, 1210, 1609, 1726
BstFNI CGCG 1 cut(s) 1581
BstHHI GCGC 2 cut(s) 562, 1581
BstKTI GATC 2 cut(s) 865, 943
BstMAI GTCTC 3 cut(s) 774, 1547, 1664
BstMBI GATC 2 cut(s) 862, 940
BstNSI RCATGY 1 cut(s) 836
BstPI GGTNACC 1 cut(s) 646
BstSCI CCNGG 3 cut(s) 642, 772, 773
BstSFI CTRYAG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 1134
BstUI CGCG 1 cut(s) 1581
BstV2I GAAGAC 2 cut(s) 126, 1500
BsuI GTATCC 1 cut(s) 940
BsuRI GGCC 3 cut(s) 238, 387, 441
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 7 cut(s) 736, 943, 1044, 1132, 1210, 1609, 1726
BtsIMutI CAGTG 2 cut(s) 385, 904
Cac8I GCNNGC 2 cut(s) 80, 1510
CfoI GCGC 2 cut(s) 562, 1581
Cfr10I RCCGGY 1 cut(s) 870
Cfr13I GGNCC 1 cut(s) 856
Cfr9I CCCGGG 1 cut(s) 773
CseI GACGC 2 cut(s) 490, 1750
CviAII CATG 7 cut(s) 73, 145, 833, 860, 1229, 1498, 1623
DdeI CTNAG 9 cut(s) 56, 168, 201, 377, 431, 603, 866, 960, 1416
DpnI GATC 2 cut(s) 864, 942
DpnII GATC 2 cut(s) 862, 940
DraI TTTAAA 1 cut(s) 1245
DriI GACNNNNNGTC 1 cut(s) 1647
EaeI YGGCCR 3 cut(s) 236, 385, 439
Eam1104I CTCTTC 3 cut(s) 966, 1290, 1745
Eam1105I GACNNNNNGTC 1 cut(s) 1647
EarI CTCTTC 3 cut(s) 966, 1290, 1745
EciI GGCGGA 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 144, 572
Eco31I GGTCTC 2 cut(s) 774, 1547
Eco47I GGWCC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 1512
Eco88I CYCGRG 1 cut(s) 773
Eco91I GGTNACC 1 cut(s) 646
EcoO65I GGTNACC 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 144, 572
ErhI CCWWGG 2 cut(s) 144, 572
Esp3I CGTCTC 1 cut(s) 1664
FaeI CATG 7 cut(s) 76, 148, 836, 863, 1232, 1501, 1626
FaqI GGGAC 2 cut(s) 716, 1037
FatI CATG 7 cut(s) 72, 144, 832, 859, 1228, 1497, 1622
FauNDI CATATG 1 cut(s) 1137
FbaI TGATCA 1 cut(s) 940
FokI GGATG 7 cut(s) 743, 950, 1051, 1139, 1217, 1616, 1733
GlaI GCGC 2 cut(s) 561, 1580
GsuI CTGGAG 2 cut(s) 944, 986
HaeIII GGCC 3 cut(s) 238, 387, 441
HapII CCGG 5 cut(s) 220, 612, 644, 774, 871
HgaI GACGC 2 cut(s) 490, 1750
HhaI GCGC 2 cut(s) 562, 1581
Hin1I GRCGYC 2 cut(s) 584, 1761
Hin1II CATG 7 cut(s) 76, 148, 836, 863, 1232, 1501, 1626
Hin6I GCGC 2 cut(s) 560, 1579
HinP1I GCGC 2 cut(s) 560, 1579
HindIII AAGCTT 1 cut(s) 1559
HinfI GANTC 5 cut(s) 25, 52, 298, 505, 757
HpaII CCGG 5 cut(s) 220, 612, 644, 774, 871
HphI GGTGA 6 cut(s) 658, 1244, 1352, 1435, 1486, 1666
Hpy166II GTNNAC 1 cut(s) 1477
Hpy188I TCNGA 9 cut(s) 57, 480, 522, 867, 1102, 1126, 1357, 1587, 1704
Hpy188III TCNNGA 5 cut(s) 877, 944, 1003, 1049, 1185
Hpy8I GTNNAC 1 cut(s) 1477
Hpy99I CGWCG 6 cut(s) 275, 484, 586, 589, 688, 1766
HpyAV CCTTC 8 cut(s) 300, 313, 322, 706, 982, 1354, 1480, 1594
HpyCH4III ACNGT 6 cut(s) 18, 194, 267, 498, 899, 1193
HpyCH4IV ACGT 3 cut(s) 360, 584, 1306
HpyCH4V TGCA 9 cut(s) 244, 1228, 1406, 1465, 1512, 1595, 1626, 1696, 1712
HpyF3I CTNAG 9 cut(s) 56, 168, 201, 377, 431, 603, 866, 960, 1416
HpySE526I ACGT 3 cut(s) 360, 584, 1306
Hsp92I GRCGYC 2 cut(s) 584, 1761
Hsp92II CATG 7 cut(s) 76, 148, 836, 863, 1232, 1501, 1626
HspAI GCGC 2 cut(s) 560, 1579
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 2 cut(s) 862, 940
LguI GCTCTTC 1 cut(s) 1745
LmnI GCTCC 4 cut(s) 133, 222, 666, 829
LweI GCATC 2 cut(s) 1566, 1683
MaeII ACGT 3 cut(s) 360, 584, 1306
MaeIII GTNAC 5 cut(s) 12, 492, 498, 646, 1766
MalI GATC 2 cut(s) 864, 942
MboI GATC 2 cut(s) 862, 940
MfeI CAATTG 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 663, 1134
MlsI TGGCCA 2 cut(s) 387, 441
MluNI TGGCCA 2 cut(s) 387, 441
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 3 cut(s) 503, 1080, 1104
Mox20I TGGCCA 2 cut(s) 387, 441
MscI TGGCCA 2 cut(s) 387, 441
MseI TTAA 4 cut(s) 486, 546, 1074, 1244
MslI CAYNNNNRTG 1 cut(s) 1166
Msp20I TGGCCA 2 cut(s) 387, 441
MspA1I CMGCKG 3 cut(s) 241, 450, 964
MspI CCGG 5 cut(s) 220, 612, 644, 774, 871
MspR9I CCNGG 3 cut(s) 644, 774, 775
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 2 cut(s) 1597, 1714
MvnI CGCG 1 cut(s) 1581
NciI CCSGG 3 cut(s) 644, 774, 775
NcoI CCATGG 1 cut(s) 144
NdeI CATATG 1 cut(s) 1137
NdeII GATC 2 cut(s) 862, 940
NlaIII CATG 7 cut(s) 76, 148, 836, 863, 1232, 1501, 1626
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 4 cut(s) 12, 498, 646, 1766
NspI RCATGY 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 1745
PctI GAATGC 2 cut(s) 1597, 1714
PfeI GAWTC 4 cut(s) 25, 298, 505, 757
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PsiI TTATAA 1 cut(s) 1388
Psp1406I AACGTT 1 cut(s) 360
PspEI GGTNACC 1 cut(s) 646
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 856
PsrI GAACNNNNNNTAC 2 cut(s) 209, 241
PstI CTGCAG 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 964
RseI CAYNNNNRTG 1 cut(s) 1166
SapI GCTCTTC 1 cut(s) 1745
SaqAI TTAA 4 cut(s) 486, 546, 1074, 1244
Sau3AI GATC 2 cut(s) 862, 940
Sau96I GGNCC 1 cut(s) 856
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 3 cut(s) 644, 774, 775
SduI GDGCHC 2 cut(s) 663, 1134
SfaNI GCATC 2 cut(s) 1566, 1683
SfcI CTRYAG 1 cut(s) 242
SinI GGWCC 1 cut(s) 856
SmaI CCCGGG 1 cut(s) 775
SmiMI CAYNNNNRTG 1 cut(s) 1166
SmlI CTYRAG 4 cut(s) 66, 138, 1027, 1049
SmoI CTYRAG 4 cut(s) 66, 138, 1027, 1049
StyD4I CCNGG 3 cut(s) 642, 772, 773
StyI CCWWGG 2 cut(s) 144, 572
TaaI ACNGT 6 cut(s) 18, 194, 267, 498, 899, 1193
TaiI ACGT 3 cut(s) 363, 587, 1309
TaqI TCGA 7 cut(s) 296, 508, 686, 743, 809, 876, 1211
TaqII GACCGA 2 cut(s) 756, 1658
TfiI GAWTC 4 cut(s) 25, 298, 505, 757
Tru1I TTAA 4 cut(s) 486, 546, 1074, 1244
Tru9I TTAA 4 cut(s) 486, 546, 1074, 1244
TscAI CASTG 2 cut(s) 385, 904
TseFI GTSAC 4 cut(s) 12, 498, 646, 1766
Tsp45I GTSAC 4 cut(s) 12, 498, 646, 1766
TspGWI ACGGA 1 cut(s) 120
TspMI CCCGGG 1 cut(s) 773
TspRI CASTG 2 cut(s) 385, 904
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 3 cut(s) 524, 976, 1240
XceI RCATGY 1 cut(s) 836
XmaI CCCGGG 1 cut(s) 773
ZraI GACGTC 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.