Rw5G049240

PRLI-interacting factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0007381
Physical Location & Seq
Forward (+)
85317570 .. 85319475
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G049240.1

Sequence Viewer

Length: 1734 bp
ATGAACGATAAGTCACAGTTGATGAATCAACCCCCACCGCCGCCGATGATGAGTCTGAGCCAAGCTCAAGCCATGAGCCAGCCGCCGCCGATGATGGCTCAACCGCCGCCGCCGCAGATGATGGCTCCGTCTTCTCAAGCCATGGCTGCTGCTGCTGCTGCTGCTGCTCAGCAGCAAGTACAGATGATGATGAACAGTCAATCTCAGCCGTTGATGATGAACCGGAGCTACAAGGCTTGGCCGCCGCAGCAGCAGCAGCAGCAACAGTTCGTCGCCGCCCAGAAGCCGCCGCAGTCGAATCTGGGAAGGAACAATTGGAAGGGTAAGAAGGGAAATGACAAGCGGAGAATGGAAAAGAACGTTCCCAATTTACCCCTGAGTGGTGGCCAGAGCAGTAGCGGAGGAGGGTATAATGTTCCCAATTTGCCCCTGAGTGGTGGCCAGAGCAGCGGAGGAGGCGGAGGAGGAGGAGGGTATATACCTCCGACGCTTAACGAGTTACAGTCACAGAATCGAATGAAAGCTCGGAAATTTTACCCCAAAAAGAAGTTTAACAATAGGTTTGCGCCTTACGCCCCAAGGAACACGACGTCGTTTATCATTAGAGCTAAGAAGTCCGGTGGGATTGCTTCGCTGGTTTCGCCTTGTCCGGTGACCCCTGCCGTGCTCCCCACGCCCATTTTCTCGCCGTCGAGGGAGGTTTTGGGGGACACGGCGAAGGAGGAGTGGGGTGTGGATGGGTATGGGTCGATGAAAGGGTTGATTCGGCTTCGGTCTCCCGGGAATGATGATGATGAGGAGGGAGGGGGTGGGTCGAGTGAGAGTGATGTGGAGGAGCATGTGGAGGTGGAGAGGAGGTTGGACCATGATCTGAGCCGGTTCGAGATGATATACCCGAATTACAGTGGGGTTGAGTATAATAATGTGCTGGAGAATAGAGTGGATGATCAGGATACACACATTGCTCAGTTGGAGGAAGAGAATTTGACTTTGAAGGAGAGGCTGTTCTTGATGGAGAGGGAGTTGGGGGACTTGAGGAGGAGGATGTTGTTTCTTGAGAGGAGGCACCATGTGATGGAGGAGGTTAATGAGGAGGTTGTGGAGAATGGGTCGGAGAACGATAGTGATGGAGGGTCGGATGTGCCCCATATGGGCATAGGGGGAGAGAGCAACATTGAGGTGGTAGATTATGTGTCCAGAAACGGTGGGTTTGGGGATGTTTCGATGGAAGAATATGTGCATGGTGAAATGAATTTAAAGGAAAATGAGGTCAAAGATGAAGTGAGAAATGAGGTTGTAGGTGATGGGGTCGTTTCAGAGAAGGTTGAGGAAGTGAGGAATGAGTTTATAATGAACAAAGTAATTGCAAATAAAACTGAGCTGGTGAGTAGTGAAGTTGAGACAAAGAATGAGAATGACTTTATGCAGGGTCAGGTGAACATAGAGAAGGCTGAAGACATGGTAATTGCCTGCAATGAGAAGAATGAAACTAAAGTTATGAGAAATGAAGTTGAGACCAAGCTTGAAAATGAGTTGATGCGCGGTCAGATGAATGCACAGAAGGATGAAGAAATGGGAACTTCATGCACAGAGAATAATAAGACTGAGGGTCAGGTGAAGAATGAAGTTGAGAGGAAGAATGAGAGTGAGTTGATGCAGGGTCAGATGAATGCACAGAGGGATGAAGAAATGGGAATTGGCAGCACAGAGAAGAGCATTGGCGTCGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

577

Amino Acids

64.0

Weight (kDa)

4.89

Isoelectric Point (pI)

61.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1349
AatII GACGTC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 1065
AccB7I CCANNNNNTGG 1 cut(s) 1075
AccII CGCG 1 cut(s) 1542
AclI AACGTT 1 cut(s) 360
AcoI YGGCCR 3 cut(s) 239, 385, 439
AcsI RAATTY 3 cut(s) 530, 982, 1252
AcuI CTGAAG 1 cut(s) 1473
AcyI GRCGYC 2 cut(s) 590, 1722
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 4 cut(s) 380, 434, 1075, 1151
AgsI TTSAA 2 cut(s) 994, 1526
AhdI GACNNNNNGTC 1 cut(s) 1608
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 1680, 1712
AloI GAACNNNNNNTCC 2 cut(s) 989, 1021
AluBI AGCT 6 cut(s) 65, 228, 524, 608, 1381, 1522
AluI AGCT 6 cut(s) 65, 228, 524, 608, 1381, 1522
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 3 cut(s) 780, 1394, 1508
Ama87I CYCGRG 1 cut(s) 779
AoxI GGCC 3 cut(s) 239, 385, 439
ApoI RAATTY 3 cut(s) 530, 982, 1252
AspLEI GCGC 2 cut(s) 568, 1542
AspS9I GGNCC 1 cut(s) 862
AsuC2I CCSGG 2 cut(s) 780, 781
AsuHPI GGTGA 6 cut(s) 664, 1256, 1313, 1396, 1447, 1627
AvaI CYCGRG 1 cut(s) 779
AvaII GGWCC 1 cut(s) 862
BaeGI GKGCMC 1 cut(s) 1146
BalI TGGCCA 2 cut(s) 387, 441
BanI GGYRCC 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 123, 1461
Bbv12I GWGCWC 1 cut(s) 669
BccI CCATC 8 cut(s) 88, 115, 731, 1006, 1069, 1121, 1219, 1298
BceAI ACGGC 4 cut(s) 193, 647, 673, 729
BcgI CGANNNNNNTGC 1 cut(s) 1705
BciVI GTATCC 1 cut(s) 946
BclI TGATCA 1 cut(s) 946
BcnI CCSGG 2 cut(s) 780, 781
BcoDI GTCTC 3 cut(s) 780, 1394, 1508
BfuI GTATCC 1 cut(s) 946
BlpI GCTNAGC 1 cut(s) 168
Bme1390I CCNGG 2 cut(s) 780, 781
Bme18I GGWCC 1 cut(s) 862
BmeRI GACNNNNNGTC 1 cut(s) 1608
BmeT110I CYCGRG 1 cut(s) 779
BmgT120I GGNCC 1 cut(s) 862
BmiI GGNNCC 2 cut(s) 126, 1067
BmrFI CCNGG 2 cut(s) 780, 781
BmsI GCATC 2 cut(s) 1527, 1644
BpiI GAAGAC 2 cut(s) 123, 1461
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 1 cut(s) 950
Bpu1102I GCTNAGC 1 cut(s) 168
BpuEI CTTGAG 4 cut(s) 51, 120, 1054, 1076
BpuMI CCSGG 2 cut(s) 780, 781
BsaHI GRCGYC 2 cut(s) 590, 1722
BsaI GGTCTC 2 cut(s) 780, 1508
BsaJI CCNNGG 3 cut(s) 141, 578, 779
BsaWI WCCGGW 3 cut(s) 222, 617, 649
BsaXI ACNNNNNCTCC 8 cut(s) 842, 872, 989, 1007, 1019, 1037, 1094, 1124
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 434, 1075, 1151
Bse118I RCCGGY 1 cut(s) 876
Bse3DI GCAATG 2 cut(s) 960, 1480
BseDI CCNNGG 3 cut(s) 141, 578, 779
BseGI GGATG 7 cut(s) 742, 949, 1050, 1144, 1222, 1570, 1687
BseLI CCNNNNNNNGG 4 cut(s) 380, 434, 1075, 1151
BseMI GCAATG 2 cut(s) 960, 1480
BseMII CTCAG 9 cut(s) 47, 182, 218, 368, 422, 863, 980, 1368, 1596
BseSI GKGCMC 1 cut(s) 1146
Bsh1236I CGCG 1 cut(s) 1542
BshFI GGCC 3 cut(s) 241, 387, 441
BshNI GGYRCC 1 cut(s) 1065
BsiHKAI GWGCWC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 779
BsiSI CCGG 5 cut(s) 223, 618, 650, 780, 877
BslFI GGGAC 2 cut(s) 722, 1043
BslI CCNNNNNNNGG 4 cut(s) 380, 434, 1075, 1151
BsmAI GTCTC 3 cut(s) 780, 1394, 1508
BsmFI GGGAC 2 cut(s) 722, 1043
BsmI GAATGC 2 cut(s) 1558, 1675
BsnI GGCC 3 cut(s) 241, 387, 441
Bso31I GGTCTC 2 cut(s) 780, 1508
BsoBI CYCGRG 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 669, 1146
Bsp143I GATC 2 cut(s) 868, 946
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 3 cut(s) 241, 387, 441
BspCNI CTCAG 9 cut(s) 48, 181, 217, 369, 423, 864, 979, 1369, 1597
BspFNI CGCG 1 cut(s) 1542
BspLI GGNNCC 2 cut(s) 126, 1067
BspQI GCTCTTC 1 cut(s) 1706
BspT107I GGYRCC 1 cut(s) 1065
BspTNI GGTCTC 2 cut(s) 780, 1508
BsrDI GCAATG 2 cut(s) 960, 1480
BsrFI RCCGGY 1 cut(s) 876
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 3 cut(s) 141, 578, 779
BssMI GATC 2 cut(s) 868, 946
BssNI GRCGYC 2 cut(s) 590, 1722
BssT1I CCWWGG 2 cut(s) 141, 578
Bst4CI ACNGT 6 cut(s) 18, 197, 267, 504, 905, 1205
Bst6I CTCTTC 2 cut(s) 972, 1706
BstACI GRCGYC 2 cut(s) 590, 1722
BstC8I GCNNGC 2 cut(s) 80, 1471
BstDSI CCRYGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 652
BstF5I GGATG 7 cut(s) 742, 949, 1050, 1144, 1222, 1570, 1687
BstFNI CGCG 1 cut(s) 1542
BstHHI GCGC 2 cut(s) 568, 1542
BstKTI GATC 2 cut(s) 871, 949
BstMAI GTCTC 3 cut(s) 780, 1394, 1508
BstMBI GATC 2 cut(s) 868, 946
BstNSI RCATGY 1 cut(s) 842
BstPI GGTNACC 1 cut(s) 652
BstSCI CCNGG 2 cut(s) 778, 779
BstSLI GKGCMC 1 cut(s) 1146
BstUI CGCG 1 cut(s) 1542
BstV2I GAAGAC 2 cut(s) 123, 1461
BsuI GTATCC 1 cut(s) 946
BsuRI GGCC 3 cut(s) 241, 387, 441
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 7 cut(s) 742, 949, 1050, 1144, 1222, 1570, 1687
BtsIMutI CAGTG 1 cut(s) 910
Cac8I GCNNGC 2 cut(s) 80, 1471
CfoI GCGC 2 cut(s) 568, 1542
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 1 cut(s) 862
Cfr9I CCCGGG 1 cut(s) 779
CseI GACGC 2 cut(s) 496, 1711
Csp6I GTAC 1 cut(s) 179
CviAII CATG 8 cut(s) 73, 142, 839, 866, 1070, 1241, 1459, 1584
CviQI GTAC 1 cut(s) 179
DpnI GATC 2 cut(s) 870, 948
DpnII GATC 2 cut(s) 868, 946
DraI TTTAAA 1 cut(s) 1257
DraIII CACNNNGTG 1 cut(s) 1072
DriI GACNNNNNGTC 1 cut(s) 1608
EaeI YGGCCR 3 cut(s) 239, 385, 439
Eam1104I CTCTTC 2 cut(s) 972, 1706
Eam1105I GACNNNNNGTC 1 cut(s) 1608
EarI CTCTTC 2 cut(s) 972, 1706
EciI GGCGGA 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 141, 578
Eco31I GGTCTC 2 cut(s) 780, 1508
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 1 cut(s) 1473
Eco88I CYCGRG 1 cut(s) 779
Eco91I GGTNACC 1 cut(s) 652
EcoO65I GGTNACC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 141, 578
ErhI CCWWGG 2 cut(s) 141, 578
FaeI CATG 8 cut(s) 76, 145, 842, 869, 1073, 1244, 1462, 1587
FaqI GGGAC 2 cut(s) 722, 1043
FatI CATG 8 cut(s) 72, 141, 838, 865, 1069, 1240, 1458, 1583
FauNDI CATATG 1 cut(s) 1149
FbaI TGATCA 1 cut(s) 946
FokI GGATG 7 cut(s) 749, 956, 1057, 1151, 1229, 1577, 1694
GlaI GCGC 2 cut(s) 567, 1541
GsuI CTGGAG 1 cut(s) 950
HaeIII GGCC 3 cut(s) 241, 387, 441
HapII CCGG 5 cut(s) 223, 618, 650, 780, 877
HgaI GACGC 2 cut(s) 496, 1711
HhaI GCGC 2 cut(s) 568, 1542
Hin1I GRCGYC 2 cut(s) 590, 1722
Hin1II CATG 8 cut(s) 76, 145, 842, 869, 1073, 1244, 1462, 1587
Hin6I GCGC 2 cut(s) 566, 1540
HinP1I GCGC 2 cut(s) 566, 1540
HindIII AAGCTT 1 cut(s) 1520
HinfI GANTC 5 cut(s) 25, 52, 298, 511, 763
HpaII CCGG 5 cut(s) 223, 618, 650, 780, 877
HphI GGTGA 6 cut(s) 664, 1256, 1313, 1396, 1447, 1627
Hpy166II GTNNAC 1 cut(s) 1438
Hpy188I TCNGA 9 cut(s) 57, 486, 528, 873, 1114, 1138, 1318, 1548, 1665
Hpy188III TCNNGA 5 cut(s) 883, 950, 1009, 1055, 1197
Hpy8I GTNNAC 1 cut(s) 1438
Hpy99I CGWCG 6 cut(s) 275, 490, 592, 595, 694, 1727
HpyAV CCTTC 8 cut(s) 300, 313, 322, 712, 988, 1315, 1441, 1555
HpyCH4III ACNGT 6 cut(s) 18, 197, 267, 504, 905, 1205
HpyCH4IV ACGT 2 cut(s) 360, 590
HpyCH4V TGCA 8 cut(s) 1240, 1367, 1426, 1473, 1556, 1587, 1657, 1673
HpySE526I ACGT 2 cut(s) 360, 590
Hsp92I GRCGYC 2 cut(s) 590, 1722
Hsp92II CATG 8 cut(s) 76, 145, 842, 869, 1073, 1244, 1462, 1587
HspAI GCGC 2 cut(s) 566, 1540
Ksp22I TGATCA 1 cut(s) 946
Kzo9I GATC 2 cut(s) 868, 946
LguI GCTCTTC 1 cut(s) 1706
LmnI GCTCC 4 cut(s) 130, 225, 672, 835
LweI GCATC 2 cut(s) 1527, 1644
MaeII ACGT 2 cut(s) 360, 590
MaeIII GTNAC 5 cut(s) 12, 498, 504, 652, 1727
MalI GATC 2 cut(s) 870, 948
MboI GATC 2 cut(s) 868, 946
MfeI CAATTG 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 669, 1146
MlsI TGGCCA 2 cut(s) 387, 441
MluNI TGGCCA 2 cut(s) 387, 441
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 5 cut(s) 509, 840, 951, 1092, 1116
Mox20I TGGCCA 2 cut(s) 387, 441
MscI TGGCCA 2 cut(s) 387, 441
MseI TTAA 4 cut(s) 492, 552, 1086, 1256
MslI CAYNNNNRTG 1 cut(s) 1178
Msp20I TGGCCA 2 cut(s) 387, 441
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 5 cut(s) 223, 618, 650, 780, 877
MspR9I CCNGG 2 cut(s) 780, 781
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 2 cut(s) 1558, 1675
MvnI CGCG 1 cut(s) 1542
NciI CCSGG 2 cut(s) 780, 781
NcoI CCATGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 1149
NdeII GATC 2 cut(s) 868, 946
NlaIII CATG 8 cut(s) 76, 145, 842, 869, 1073, 1244, 1462, 1587
NlaIV GGNNCC 2 cut(s) 126, 1067
NmuCI GTSAC 4 cut(s) 12, 504, 652, 1727
NspI RCATGY 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 1706
PctI GAATGC 2 cut(s) 1558, 1675
PfeI GAWTC 4 cut(s) 25, 298, 511, 763
PflMI CCANNNNNTGG 1 cut(s) 1075
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
PsiI TTATAA 1 cut(s) 1349
Psp1406I AACGTT 1 cut(s) 360
PspEI GGTNACC 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 126, 1067
PspPI GGNCC 1 cut(s) 862
PsrI GAACNNNNNNTAC 2 cut(s) 212, 244
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 1178
SapI GCTCTTC 1 cut(s) 1706
SaqAI TTAA 4 cut(s) 492, 552, 1086, 1256
Sau3AI GATC 2 cut(s) 868, 946
Sau96I GGNCC 1 cut(s) 862
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 780, 781
SduI GDGCHC 2 cut(s) 669, 1146
SfaNI GCATC 2 cut(s) 1527, 1644
SinI GGWCC 1 cut(s) 862
SmaI CCCGGG 1 cut(s) 781
SmiMI CAYNNNNRTG 1 cut(s) 1178
SmlI CTYRAG 4 cut(s) 66, 135, 1033, 1055
SmoI CTYRAG 4 cut(s) 66, 135, 1033, 1055
StyD4I CCNGG 2 cut(s) 778, 779
StyI CCWWGG 2 cut(s) 141, 578
TaaI ACNGT 6 cut(s) 18, 197, 267, 504, 905, 1205
TaiI ACGT 2 cut(s) 363, 593
TaqI TCGA 7 cut(s) 296, 514, 692, 749, 815, 882, 1223
TaqII GACCGA 1 cut(s) 762
TatI WGTACW 1 cut(s) 178
TfiI GAWTC 4 cut(s) 25, 298, 511, 763
Tru1I TTAA 4 cut(s) 492, 552, 1086, 1256
Tru9I TTAA 4 cut(s) 492, 552, 1086, 1256
TscAI CASTG 1 cut(s) 910
TseFI GTSAC 4 cut(s) 12, 504, 652, 1727
Tsp45I GTSAC 4 cut(s) 12, 504, 652, 1727
TspGWI ACGGA 1 cut(s) 117
TspMI CCCGGG 1 cut(s) 779
TspRI CASTG 1 cut(s) 910
Van91I CCANNNNNTGG 1 cut(s) 1075
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 3 cut(s) 530, 982, 1252
XceI RCATGY 1 cut(s) 842
XmaI CCCGGG 1 cut(s) 779
ZraI GACGTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.