Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Reverse (-)

7187096 .. 7189696

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCATCGCTAAGCTGGAAGCACCATACCCTAATTCAGGCTTTGATTTCACGAGGTCCTCTCAAGGAGAAAGAATTTCACTCAATCTTCACCGCCGTCACCGGCAGAAACCCAGTAACTGTTAAAAAAATATTTGACAAGTACCTTCTTGAGATAAACAAGGAACTCTCATATGTTCACTTTGAGTTGAAGGCTTGTAGAGATCAGTATGATGGCCAAGTTTGTTATGGAGTCGTTAACAATGTGGCTGATGATCAATCCAAACTCGGGACTAAATATTCTGTTCCCCAGATTGCATTTTTTAAAGGCATTATAGAAGCAATTGCACAGGATGAAGCTGCTCAAGGTTGCATATCGAGCTTTGATGCTCTTAATATTCGATTGGAGAATCAGATATCAAGTGAAGCCAGCAGCAGTCAACAGCAAGTCCCTCCTGCTTTCAAGAACTTTTCAATGACACAAAAGGAAAAAACTCTCGATGAACTTGTAAGGGACAAGTGGCTGTGCCGCACAAGAGAGAGAAACATTGGACTTGGTATAAGATCTCTTCTTGACCTTCGCAGTTGGTTCAGAAACAATGATGTTCCTTCCTGTGAGGTCTGCAATGAAGCTGGAGTAAAGGCAGATTTGTGTCCAACCGAAGGTTGCCCTGTCCGGATACACAAGTACTGCCTCAAAAAATTGTTATCTCAAAGGGATGATAAACGTTGCTCTGGTTGCGGGAAGCCATGGCCCTTGAGTAAAATTACAAAAACAGAAGCTGCTGAAGAAGCAATGAATGATGAAGAGGAAAGCGAGACTCAAGCAACAGCTCCAAAAGCCAAAAGAAGAAGACAACAGCGAGACTCAACTGAAAATGGTTCTTCTCAAGCTTCTTTAGCTTCAACTAGTGGTGCTAATACGAGAAGAGTAACCCGTAGCGTTGGGCACTCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

312

Amino Acids

35.02

Weight (kDa)

8.89

Isoelectric Point (pI)

49.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_Nse1	PF07574	8 - 186	9.4e-45	Nse1 non-SMC component of SMC5-6 complex
zf-RING-like	PF08746	198 - 240	6.2e-11	RING-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	654
AciI	CCGC	3 cut(s)	93, 508, 720
AclI	AACGTT	1 cut(s)	706
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	143, 668
AfiI	CCNNNNNNNGG	3 cut(s)	37, 267, 641
AgsI	TTSAA	4 cut(s)	190, 442, 453, 885
AhlI	ACTAGT	1 cut(s)	887
AluBI	AGCT	8 cut(s)	15, 338, 360, 611, 761, 812, 872, 881
AluI	AGCT	8 cut(s)	15, 338, 360, 611, 761, 812, 872, 881
Alw26I	GTCTC	2 cut(s)	791, 837
AlwNI	CAGNNNCTG	2 cut(s)	119, 761
Ama87I	CYCGRG	2 cut(s)	266, 931
Aor13HI	TCCGGA	1 cut(s)	654
AoxI	GGCC	2 cut(s)	214, 731
ApeKI	GCWGC	3 cut(s)	338, 411, 761
ApoI	RAATTY	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	56, 732
AsuHPI	GGTGA	2 cut(s)	82, 91
AvaI	CYCGRG	2 cut(s)	266, 931
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	930
BaeI	ACNNNNGTAYC	2 cut(s)	650, 683
BalI	TGGCCA	1 cut(s)	216
BauI	CACGAG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	838
BbvI	GCAGC	3 cut(s)	325, 423, 748
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	651
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	791, 837
BcuI	ACTAGT	1 cut(s)	887
BfaI	CTAG	1 cut(s)	888
BfuI	GTATCC	1 cut(s)	651
BglII	AGATCT	1 cut(s)	542
BisI	GCNGC	4 cut(s)	339, 412, 508, 762
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	4 cut(s)	340, 413, 509, 763
BmcAI	AGTACT	1 cut(s)	668
Bme18I	GGWCC	1 cut(s)	56
BmeT110I	CYCGRG	2 cut(s)	266, 931
BmgT120I	GGNCC	2 cut(s)	56, 732
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	2 cut(s)	14, 355
BmuI	ACTGGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	838
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
BpmI	CTGGAG	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	11
BpuEI	CTTGAG	6 cut(s)	47, 170, 327, 757, 786, 852
BsaJI	CCNNGG	1 cut(s)	728
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 267, 641
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	2 cut(s)	610, 780
BseAI	TCCGGA	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	728
BseGI	GGATG	2 cut(s)	337, 703
BseLI	CCNNNNNNNGG	3 cut(s)	37, 267, 641
BseMI	GCAATG	2 cut(s)	610, 780
BseNI	ACTGG	1 cut(s)	113
BseSI	GKGCMC	1 cut(s)	930
BseXI	GCAGC	3 cut(s)	325, 423, 748
BshFI	GGCC	2 cut(s)	216, 733
BsiHKCI	CYCGRG	2 cut(s)	266, 931
BsiSI	CCGG	2 cut(s)	102, 655
BslFI	GGGAC	3 cut(s)	283, 413, 506
BslI	CCNNNNNNNGG	3 cut(s)	37, 267, 641
BsmAI	GTCTC	2 cut(s)	791, 837
BsmFI	GGGAC	3 cut(s)	283, 413, 506
BsnI	GGCC	2 cut(s)	216, 733
BsoBI	CYCGRG	2 cut(s)	266, 931
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp13I	TCCGGA	1 cut(s)	654
Bsp143I	GATC	3 cut(s)	202, 253, 542
Bsp1720I	GCTNAGC	1 cut(s)	11
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	3 cut(s)	93, 508, 720
BspANI	GGCC	2 cut(s)	216, 733
BspEI	TCCGGA	1 cut(s)	654
BsrDI	GCAATG	2 cut(s)	610, 780
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	728
BssMI	GATC	3 cut(s)	202, 253, 542
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	552, 780, 901
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	1 cut(s)	728
BstENI	CCTNNNNNAGG	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	337, 703
BstKTI	GATC	3 cut(s)	205, 256, 545
BstMAI	GTCTC	2 cut(s)	791, 837
BstMBI	GATC	3 cut(s)	202, 253, 542
BstMWI	GCNNNNNNNGC	5 cut(s)	357, 717, 770, 818, 878
BstSLI	GKGCMC	1 cut(s)	930
BstV1I	GCAGC	3 cut(s)	325, 423, 748
BstV2I	GAAGAC	1 cut(s)	838
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuI	GTATCC	1 cut(s)	651
BsuRI	GGCC	2 cut(s)	216, 733
BtgI	CCRYGG	1 cut(s)	728
BtsCI	GGATG	2 cut(s)	337, 703
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	2 cut(s)	119, 761
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	56, 732
Csp6I	GTAC	2 cut(s)	142, 667
CviAII	CATG	1 cut(s)	729
CviQI	GTAC	2 cut(s)	142, 667
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	204, 255, 544
DpnII	GATC	3 cut(s)	202, 253, 542
DraI	TTTAAA	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	552, 780, 901
EarI	CTCTTC	3 cut(s)	552, 780, 901
Eco130I	CCWWGG	1 cut(s)	728
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	2 cut(s)	266, 931
EcoNI	CCTNNNNNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	1 cut(s)	732
FaiI	YATR	9 cut(s)	27, 172, 174, 210, 228, 314, 353, 539, 730
FaqI	GGGAC	3 cut(s)	283, 413, 506
FatI	CATG	1 cut(s)	728
FauI	CCCGC	1 cut(s)	713
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	339, 412, 508, 762
FokI	GGATG	2 cut(s)	344, 710
Fsp4HI	GCNGC	4 cut(s)	339, 412, 508, 762
FspBI	CTAG	1 cut(s)	888
GluI	GCNGC	4 cut(s)	339, 412, 508, 762
GsuI	CTGGAG	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	216, 733
HapII	CCGG	2 cut(s)	102, 655
Hin1II	CATG	1 cut(s)	732
HincII	GTYRAC	2 cut(s)	238, 419
HindII	GTYRAC	2 cut(s)	238, 419
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	4 cut(s)	231, 388, 799, 845
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	102, 655
HphI	GGTGA	2 cut(s)	82, 91
Hpy166II	GTNNAC	3 cut(s)	178, 238, 419
Hpy188I	TCNGA	2 cut(s)	393, 572
Hpy188III	TCNNGA	7 cut(s)	51, 149, 268, 442, 476, 551, 655
Hpy8I	GTNNAC	3 cut(s)	178, 238, 419
HpyAV	CCTTC	5 cut(s)	155, 184, 566, 597, 635
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	4 cut(s)	296, 326, 351, 603
HpyF10VI	GCNNNNNNNGC	5 cut(s)	357, 717, 770, 818, 878
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	1 cut(s)	732
Kpn2I	TCCGGA	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	202, 253, 542
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	325, 423, 748
LweI	GCATC	2 cut(s)	14, 355
MaeI	CTAG	1 cut(s)	888
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	97, 115, 910
MalI	GATC	3 cut(s)	204, 255, 544
MboI	GATC	3 cut(s)	202, 253, 542
MboII	GAAGA	8 cut(s)	79, 539, 779, 797, 840, 843, 855, 918
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	1 cut(s)	930
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	5 cut(s)	33, 74, 321, 680, 744
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	240, 793, 839
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	7 cut(s)	47, 69, 441, 589, 683, 781, 927
Mox20I	TGGCCA	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	4 cut(s)	123, 237, 303, 372
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	2 cut(s)	102, 655
MunI	CAATTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	357, 717, 770, 818, 878
NcoI	CCATGG	1 cut(s)	728
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	3 cut(s)	202, 253, 542
NlaIII	CATG	1 cut(s)	732
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	931
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	4 cut(s)	340, 413, 509, 763
PleI	GAGTC	3 cut(s)	239, 793, 839
PpsI	GAGTC	3 cut(s)	239, 793, 839
PpuMI	RGGWCCY	1 cut(s)	56
Psp1406I	AACGTT	1 cut(s)	706
Psp5II	RGGWCCY	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	56, 732
PspPPI	RGGWCCY	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	931
PstNI	CAGNNNCTG	2 cut(s)	119, 761
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	2 cut(s)	143, 668
RsaNI	GTAC	2 cut(s)	142, 667
SaqAI	TTAA	4 cut(s)	123, 237, 303, 372
SatI	GCNGC	4 cut(s)	339, 412, 508, 762
Sau3AI	GATC	3 cut(s)	202, 253, 542
Sau96I	GGNCC	2 cut(s)	56, 732
ScaI	AGTACT	1 cut(s)	668
SchI	GAGTC	3 cut(s)	240, 793, 839
SduI	GDGCHC	1 cut(s)	930
SfaNI	GCATC	2 cut(s)	14, 355
Sfr274I	CTCGAG	1 cut(s)	931
SinI	GGWCC	1 cut(s)	56
SlaI	CTCGAG	1 cut(s)	931
SmlI	CTYRAG	7 cut(s)	62, 149, 342, 736, 801, 867, 931
SmoI	CTYRAG	7 cut(s)	62, 149, 342, 736, 801, 867, 931
SpeI	ACTAGT	1 cut(s)	887
Sse9I	AATT	5 cut(s)	33, 74, 321, 680, 744
SsiI	CCGC	3 cut(s)	93, 508, 720
SspI	AATATT	3 cut(s)	132, 278, 376
SspMI	CTAG	1 cut(s)	888
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	4 cut(s)	356, 379, 477, 932
TasI	AATT	5 cut(s)	33, 74, 321, 680, 744
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	123, 237, 303, 372
Tru9I	TTAA	4 cut(s)	123, 237, 303, 372
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	338, 411, 761
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	5 cut(s)	348, 495, 621, 791, 798
VpaK11BI	GGWCC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	931
XspI	CTAG	1 cut(s)	888
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.