Rh1BG210900

Non-structural maintenance of chromosomes element 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003611
Physical Location & Seq
Reverse (-)
32962012 .. 32977474
15463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG210900.1

Sequence Viewer

Length: 393 bp
ATGTTTATAAGGACTATAGAAGCAATAGTGCAAGAAGCTGCTCAAGGAACCATATCTAGCAGAGGTTCACTTCCTATCCCTACTGCATTGAAGAACTTTTCAATGTCCCAGAAGGAAAAAACTCTTGATGAATTTGTACGGGATAAATGGCTTTCCTTCACTGCTGAGGGTCATGTTGGACTTGGTGTCAGATCCTTCCTTGATCTGCGAAGTTGGTTTCGCAATAATGATGTTCCTTCATGCGAAGTGTGCAACGAAGCTGGCGTGAAGGCAGTGTTATGCCAGAAAGAGGGTTGTTTGGTTCGAATTCATCAGTACTGCCTAGGAAAACTGTTTGCTAAGAAAAAGGTATATTATATTGATAGGGCTGTAGATTTTGCACTCCACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMC_Nse1 zf-RING-like

Protein Analysis

130

Amino Acids

14.7

Weight (kDa)

8.87

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMC_Nse1 PF07574 23 - 69 7.2e-10 Nse1 non-SMC component of SMC5-6 complex
zf-RING-like PF08746 81 - 115 1.2e-08 RING-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 8
AclWI GGATC 1 cut(s) 186
AcsI RAATTY 2 cut(s) 131, 306
AfaI GTAC 2 cut(s) 138, 317
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 2 cut(s) 91, 102
AhdI GACNNNNNGTC 1 cut(s) 185
AluBI AGCT 2 cut(s) 38, 260
AluI AGCT 2 cut(s) 38, 260
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 2 cut(s) 131, 306
AspA2I CCTAGG 1 cut(s) 322
AsuII TTCGAA 1 cut(s) 304
AvrII CCTAGG 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 25
BfaI CTAG 2 cut(s) 57, 323
BfmI CTRYAG 2 cut(s) 15, 369
BisI GCNGC 1 cut(s) 39
BlnI CCTAGG 1 cut(s) 322
BlsI GCNGC 1 cut(s) 40
BmcAI AGTACT 1 cut(s) 317
BmeRI GACNNNNNGTC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 322
Bsc4I CCNNNNNNNGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 25
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 191, 202
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 2 cut(s) 191, 202
BssT1I CCWWGG 1 cut(s) 322
Bst4CI ACNGT 1 cut(s) 333
BstBI TTCGAA 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 165, 339
BstKTI GATC 2 cut(s) 194, 205
BstMBI GATC 2 cut(s) 191, 202
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstSFI CTRYAG 2 cut(s) 15, 369
BstV1I GCAGC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BtsI GCAGTG 2 cut(s) 159, 279
BtsIMutI CAGTG 2 cut(s) 159, 279
Cac8I GCNNGC 1 cut(s) 262
Csp6I GTAC 2 cut(s) 137, 316
CviAII CATG 2 cut(s) 173, 240
CviJI RGCY 4 cut(s) 38, 151, 260, 368
CviKI_1 RGCY 4 cut(s) 38, 151, 260, 368
CviQI GTAC 2 cut(s) 137, 316
DdeI CTNAG 2 cut(s) 165, 339
DpnI GATC 2 cut(s) 193, 204
DpnII GATC 2 cut(s) 191, 202
DriI GACNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 322
EcoRI GAATTC 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 176, 243
FaiI YATR 8 cut(s) 8, 17, 53, 174, 241, 280, 352, 357
FaqI GGGAC 1 cut(s) 91
FatI CATG 2 cut(s) 172, 239
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 2 cut(s) 57, 323
GluI GCNGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 176, 243
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 5 cut(s) 106, 166, 205, 246, 262
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 31, 86, 252, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 165, 339
Hsp92II CATG 2 cut(s) 176, 243
Kzo9I GATC 2 cut(s) 191, 202
LpnPI CCDG 3 cut(s) 122, 246, 296
Lsp1109I GCAGC 1 cut(s) 25
MaeI CTAG 2 cut(s) 57, 323
MalI GATC 2 cut(s) 193, 204
MboI GATC 2 cut(s) 191, 202
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 191
MluCI AATT 2 cut(s) 131, 306
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 3 cut(s) 56, 160, 283
MseI TTAA 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeII GATC 2 cut(s) 191, 202
NlaIII CATG 2 cut(s) 176, 243
NlaIV GGNNCC 1 cut(s) 49
NspV TTCGAA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PkrI GCNGC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 49
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 2 cut(s) 138, 317
RsaNI GTAC 2 cut(s) 137, 316
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 2 cut(s) 191, 202
ScaI AGTACT 1 cut(s) 317
SetI ASST 4 cut(s) 40, 67, 262, 351
SfcI CTRYAG 2 cut(s) 15, 369
SfuI TTCGAA 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 131, 306
SspMI CTAG 2 cut(s) 57, 323
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 333
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 131, 306
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TscAI CASTG 2 cut(s) 166, 279
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 144, 228, 299
TspRI CASTG 2 cut(s) 166, 279
XapI RAATTY 2 cut(s) 131, 306
XmaJI CCTAGG 1 cut(s) 322
XspI CTAG 2 cut(s) 57, 323
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.