Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Reverse (-)

22105377 .. 22110143

Gene Structure 4767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1180700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGACGGAACTGAACTCGAAACACCAGACTGTCATTCAAGCTCTGCTTTCACGCGGCCCACTCAAGGAGGACCACTTCCACTCCCTCTTCACCGCTCTCACCGGCAAAACCCCAGGTAGTGATCGGCAGAAGTTTGATGATTTTCTTCTCAAGATAAACAAGGCACTTTCTTATGTTCAGTTTGAGTTGAGGGGATGCAGAAACCAATATGACGGTCAAGTTTATTATGGAGTTGTCAATAATGTTTCCGACGAAGAATCCAAGCTTGGAACAAAATATTCAGTCGCTCAGATTGCTTTCTATAAGGCCATTATAGAAGCAATAGTGCAGGATGCTGCAGCTCAAGGAACCATATCTAACATTGATGCTCTTAATCTAAGATTAGAGAATCAGGTTCTCATGGGTTCAATGTCGCAATCAGAAGGAGGTCTACCTCATGTGCCTCCTGCACTAAAGAATTTCTCAATATCTCAGAAGGAGAAAACTCTTGATGAACTTGTACGGGACCAATGGCTTAGCTTAACCCCAGATAATTATATTGGACTTGGTATCAGATCCTTCCTTGACCTGCGAAGTTGGTTTCGTAATAATGAAGTTCCGCCATGTGAAGTGTGCAATGAAGCCGGGGTGAAGGCAGTGTTGTGCGAAAAAGACGGATGTAGCGTTCGAATTCATCAGTATTGTGCGAAGAAAATGTCTTTGCAAAAGAAGGGCGGAAGAGTTTGTCCAAGTTGTGGTACTCAATGGCAATATACAGTAACCAAAGCAGAAGCTGTAGAAGAAGAGCCAGATAACCCTACCGAGAGCCAGCCACCCGTTGGACCCAAGAAAAAGAGGCTGCGAAGAAATGAAATTGGCGATGGAGATGTAGCTGAATGCGGCTCCTCTCAAGCATCCTTACCTGGTGGTCCTACTCCGAGAAGATCCAGTCGAAACTCAATCCGCCTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

318

Amino Acids

35.17

Weight (kDa)

8.48

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_Nse1	PF07574	8 - 190	1.4e-44	Nse1 non-SMC component of SMC5-6 complex
zf-RING-like	PF08746	202 - 245	4.4e-09	RING-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	576
AccB7I	CCANNNNNTGG	2 cut(s)	734, 818
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	430
AccII	CGCG	1 cut(s)	54
AciI	CCGC	6 cut(s)	54, 93, 599, 714, 879, 943
AclWI	GGATC	2 cut(s)	549, 918
AcsI	RAATTY	2 cut(s)	457, 669
AfaI	GTAC	2 cut(s)	501, 739
AfiI	CCNNNNNNNGG	3 cut(s)	64, 734, 818
AflII	CTTAAG	1 cut(s)	947
AgsI	TTSAA	2 cut(s)	38, 408
AjnI	CCWGG	2 cut(s)	112, 901
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AloI	GAACNNNNNNTCC	2 cut(s)	648, 680
AluBI	AGCT	6 cut(s)	41, 265, 341, 519, 773, 872
AluI	AGCT	6 cut(s)	41, 265, 341, 519, 773, 872
AlwI	GGATC	2 cut(s)	549, 918
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	55, 306
ApeKI	GCWGC	3 cut(s)	335, 338, 838
ApoI	RAATTY	2 cut(s)	457, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AspS9I	GGNCC	5 cut(s)	56, 70, 505, 821, 908
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	3 cut(s)	82, 91, 640
AsuII	TTCGAA	1 cut(s)	667
AvaII	GGWCC	4 cut(s)	70, 505, 821, 908
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BbvI	GCAGC	3 cut(s)	322, 350, 825
BccI	CCATC	1 cut(s)	854
BciT130I	CCWGG	2 cut(s)	114, 903
BcnI	CCSGG	1 cut(s)	625
BfmI	CTRYAG	2 cut(s)	336, 774
BfrI	CTTAAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	576
BisI	GCNGC	5 cut(s)	55, 336, 339, 839, 880
BlpI	GCTNAGC	1 cut(s)	515
BlsI	GCNGC	5 cut(s)	56, 337, 340, 840, 881
Bme1390I	CCNGG	3 cut(s)	114, 625, 903
Bme18I	GGWCC	4 cut(s)	70, 505, 821, 908
BmgT120I	GGNCC	5 cut(s)	56, 70, 505, 821, 908
BmiI	GGNNCC	4 cut(s)	349, 506, 823, 883
BmrFI	CCNGG	3 cut(s)	114, 625, 903
BmsI	GCATC	4 cut(s)	185, 322, 355, 902
Bpu1102I	GCTNAGC	1 cut(s)	515
Bpu14I	TTCGAA	1 cut(s)	667
BpuEI	CTTGAG	4 cut(s)	47, 134, 327, 873
BpuMI	CCSGG	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	112, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 734, 818
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	927
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	2 cut(s)	114, 903
BseDI	CCNNGG	2 cut(s)	112, 624
BseGI	GGATG	4 cut(s)	200, 337, 662, 893
BseLI	CCNNNNNNNGG	3 cut(s)	64, 734, 818
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	2 cut(s)	302, 485
BseNI	ACTGG	1 cut(s)	927
BseRI	GAGGAG	1 cut(s)	874
BseXI	GCAGC	3 cut(s)	322, 350, 825
BsgI	GTGCAG	2 cut(s)	347, 432
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	57, 308
BsiSI	CCGG	2 cut(s)	102, 624
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	64, 734, 818
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	881
BsnI	GGCC	2 cut(s)	57, 308
Bsp119I	TTCGAA	1 cut(s)	667
Bsp143I	GATC	3 cut(s)	121, 554, 923
Bsp1720I	GCTNAGC	1 cut(s)	515
BspACI	CCGC	6 cut(s)	54, 93, 599, 714, 879, 943
BspANI	GGCC	2 cut(s)	57, 308
BspCNI	CTCAG	2 cut(s)	301, 484
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	349, 506, 823, 883
BspMAI	CTGCAG	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	549, 918
BspQI	GCTCTTC	1 cut(s)	777
BspT104I	TTCGAA	1 cut(s)	667
BspTI	CTTAAG	1 cut(s)	947
BsrBI	CCGCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	927
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	112, 624
BssMI	GATC	3 cut(s)	121, 554, 923
Bst2UI	CCWGG	2 cut(s)	114, 903
Bst4CI	ACNGT	3 cut(s)	31, 215, 757
Bst6I	CTCTTC	3 cut(s)	92, 712, 777
BstAFI	CTTAAG	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	809
BstDEI	CTNAG	4 cut(s)	288, 377, 471, 515
BstF5I	GGATG	4 cut(s)	200, 337, 662, 893
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	124, 557, 926
BstMBI	GATC	3 cut(s)	121, 554, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	114, 903
BstSCI	CCNGG	3 cut(s)	112, 623, 901
BstSFI	CTRYAG	2 cut(s)	336, 774
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	322, 350, 825
BstX2I	RGATCY	2 cut(s)	554, 923
BstYI	RGATCY	2 cut(s)	554, 923
BsuRI	GGCC	2 cut(s)	57, 308
BtgZI	GCGATG	1 cut(s)	873
BtsCI	GGATG	4 cut(s)	200, 337, 662, 893
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	1 cut(s)	809
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	5 cut(s)	56, 70, 505, 821, 908
CsiI	ACCWGGT	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	500, 738
CviAII	CATG	3 cut(s)	400, 437, 603
CviQI	GTAC	2 cut(s)	500, 738
DdeI	CTNAG	4 cut(s)	288, 377, 471, 515
DpnI	GATC	3 cut(s)	123, 556, 925
DpnII	GATC	3 cut(s)	121, 554, 923
Eam1104I	CTCTTC	3 cut(s)	92, 712, 777
EarI	CTCTTC	3 cut(s)	92, 712, 777
EciI	GGCGGA	3 cut(s)	588, 729, 932
Eco47I	GGWCC	4 cut(s)	70, 505, 821, 908
EcoRI	GAATTC	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	112, 901
FaeI	CATG	3 cut(s)	403, 440, 606
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	3 cut(s)	399, 436, 602
FblI	GTMKAC	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	55, 336, 339, 839, 880
FokI	GGATG	4 cut(s)	207, 344, 669, 880
Fsp4HI	GCNGC	5 cut(s)	55, 336, 339, 839, 880
GluI	GCNGC	5 cut(s)	55, 336, 339, 839, 880
HaeIII	GGCC	2 cut(s)	57, 308
HapII	CCGG	2 cut(s)	102, 624
Hin1II	CATG	3 cut(s)	403, 440, 606
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	257, 388
HpaII	CCGG	2 cut(s)	102, 624
HphI	GGTGA	3 cut(s)	82, 91, 640
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	6 cut(s)	250, 291, 421, 474, 554, 918
Hpy188III	TCNNGA	2 cut(s)	151, 488
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	5 cut(s)	416, 469, 568, 625, 703
HpyCH4III	ACNGT	3 cut(s)	31, 215, 757
HpyCH4V	TGCA	6 cut(s)	198, 328, 338, 449, 615, 703
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	288, 377, 471, 515
Hsp92II	CATG	3 cut(s)	403, 440, 606
Kzo9I	GATC	3 cut(s)	121, 554, 923
LguI	GCTCTTC	1 cut(s)	777
LmnI	GCTCC	1 cut(s)	887
Lsp1109I	GCAGC	3 cut(s)	322, 350, 825
LweI	GCATC	4 cut(s)	185, 322, 355, 902
MabI	ACCWGGT	1 cut(s)	901
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	3 cut(s)	123, 556, 925
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	3 cut(s)	121, 554, 923
MboII	GAAGA	9 cut(s)	79, 137, 266, 700, 729, 791, 794, 855, 933
MflI	RGATCY	2 cut(s)	554, 923
MluCI	AATT	4 cut(s)	457, 532, 669, 852
MmeI	TCCRAC	2 cut(s)	273, 799
MnlI	CCTC	8 cut(s)	61, 95, 183, 419, 444, 453, 828, 895
MseI	TTAA	3 cut(s)	372, 521, 948
MspCI	CTTAAG	1 cut(s)	947
MspI	CCGG	2 cut(s)	102, 624
MspR9I	CCNGG	3 cut(s)	114, 625, 903
Mva1269I	GAATGC	1 cut(s)	881
MvaI	CCWGG	2 cut(s)	114, 903
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	3 cut(s)	121, 554, 923
NlaIII	CATG	3 cut(s)	403, 440, 606
NlaIV	GGNNCC	4 cut(s)	349, 506, 823, 883
NspV	TTCGAA	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	1 cut(s)	881
PfeI	GAWTC	2 cut(s)	257, 388
PflMI	CCANNNNNTGG	2 cut(s)	734, 818
PkrI	GCNGC	5 cut(s)	56, 337, 340, 840, 881
Psp6I	CCWGG	2 cut(s)	112, 901
PspGI	CCWGG	2 cut(s)	112, 901
PspN4I	GGNNCC	4 cut(s)	349, 506, 823, 883
PspPI	GGNCC	5 cut(s)	56, 70, 505, 821, 908
PstI	CTGCAG	1 cut(s)	340
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	554, 923
RsaI	GTAC	2 cut(s)	501, 739
RsaNI	GTAC	2 cut(s)	500, 738
SapI	GCTCTTC	1 cut(s)	777
SaqAI	TTAA	3 cut(s)	372, 521, 948
SatI	GCNGC	5 cut(s)	55, 336, 339, 839, 880
Sau3AI	GATC	3 cut(s)	121, 554, 923
Sau96I	GGNCC	5 cut(s)	56, 70, 505, 821, 908
ScrFI	CCNGG	3 cut(s)	114, 625, 903
SexAI	ACCWGGT	1 cut(s)	901
SfaNI	GCATC	4 cut(s)	185, 322, 355, 902
SfcI	CTRYAG	2 cut(s)	336, 774
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	4 cut(s)	70, 505, 821, 908
SmlI	CTYRAG	5 cut(s)	62, 149, 342, 888, 947
SmoI	CTYRAG	5 cut(s)	62, 149, 342, 888, 947
Sse9I	AATT	4 cut(s)	457, 532, 669, 852
SsiI	CCGC	6 cut(s)	54, 93, 599, 714, 879, 943
SspI	AATATT	1 cut(s)	278
StyD4I	CCNGG	3 cut(s)	112, 623, 901
TaaI	ACNGT	3 cut(s)	31, 215, 757
TaqI	TCGA	3 cut(s)	17, 667, 931
TasI	AATT	4 cut(s)	457, 532, 669, 852
TauI	GCSGC	2 cut(s)	57, 882
TfiI	GAWTC	2 cut(s)	257, 388
Tru1I	TTAA	3 cut(s)	372, 521, 948
Tru9I	TTAA	3 cut(s)	372, 521, 948
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	3 cut(s)	335, 338, 838
TspDTI	ATGAA	5 cut(s)	507, 606, 633, 662, 864
TspGWI	ACGGA	2 cut(s)	20, 669
TspRI	CASTG	1 cut(s)	642
Van91I	CCANNNNNTGG	2 cut(s)	734, 818
Vha464I	CTTAAG	1 cut(s)	947
VpaK11BI	GGWCC	4 cut(s)	70, 505, 821, 908
XapI	RAATTY	2 cut(s)	457, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XmiI	GTMKAC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.