Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027729.1

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 837

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027729.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

atgtcccagaaggaaaaaactcttgatgaatttgtacgggataaatggctgtccttcactgctgagggtcatgttaaacttggtgtcagatccttccttgatctgcgaagttggtttcgcaataatgatgttccttcatgcgaagtgtgcaacgaaactggcgtgaaggcagtgttatgccagaaagagggttgttcggttcgaattcatcagtactgcctaggaaaactgtttgctaagaaaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

82

Amino Acids

9.47

Weight (kDa)

9.1

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	84
AcsI	RAATTY	2 cut(s)	29, 204
AfaI	GTAC	2 cut(s)	36, 215
AfiI	CCNNNNNNNGG	1 cut(s)	187
AlwI	GGATC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	29, 204
AspA2I	CCTAGG	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	202
AvrII	CCTAGG	1 cut(s)	220
BbvCI	CCTCAGC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	221
BlnI	CCTAGG	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	202
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	187
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	89, 100
BspCNI	CTCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	89, 100
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	63, 237
BstKTI	GATC	2 cut(s)	92, 103
BstMBI	GATC	2 cut(s)	89, 100
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsI	GCAGTG	2 cut(s)	57, 177
BtsIMutI	CAGTG	2 cut(s)	57, 177
Csp6I	GTAC	2 cut(s)	35, 214
CviAII	CATG	2 cut(s)	71, 138
CviJI	RGCY	1 cut(s)	49
CviKI_1	RGCY	1 cut(s)	49
CviQI	GTAC	2 cut(s)	35, 214
DdeI	CTNAG	2 cut(s)	63, 237
DpnI	GATC	2 cut(s)	91, 102
DpnII	GATC	2 cut(s)	89, 100
Eco130I	CCWWGG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	74, 141
FaiI	YATR	3 cut(s)	72, 139, 178
FatI	CATG	2 cut(s)	70, 137
FspBI	CTAG	1 cut(s)	221
Hin1II	CATG	2 cut(s)	74, 141
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	4, 64, 103, 144, 160
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	2 cut(s)	63, 237
Hsp92II	CATG	2 cut(s)	74, 141
Kzo9I	GATC	2 cut(s)	89, 100
LpnPI	CCDG	3 cut(s)	20, 144, 194
MaeI	CTAG	1 cut(s)	221
MalI	GATC	2 cut(s)	91, 102
MboI	GATC	2 cut(s)	89, 100
MflI	RGATCY	1 cut(s)	89
MluCI	AATT	2 cut(s)	29, 204
MnlI	CCTC	2 cut(s)	58, 181
MseI	TTAA	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	2 cut(s)	89, 100
NlaIII	CATG	2 cut(s)	74, 141
NspV	TTCGAA	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	2 cut(s)	36, 215
RsaNI	GTAC	2 cut(s)	35, 214
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	89, 100
ScaI	AGTACT	1 cut(s)	215
SfuI	TTCGAA	1 cut(s)	202
Sse9I	AATT	2 cut(s)	29, 204
SspMI	CTAG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	29, 204
TatI	WGTACW	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	2 cut(s)	64, 177
TspDTI	ATGAA	3 cut(s)	42, 126, 197
TspRI	CASTG	2 cut(s)	64, 177
XapI	RAATTY	2 cut(s)	29, 204
XmaJI	CCTAGG	1 cut(s)	220
XspI	CTAG	1 cut(s)	221
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.