Rw1G009200

Non-structural maintenance of chromosomes element 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0003611
Physical Location & Seq
Reverse (-)
20279154 .. 20282478
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009200.1

Sequence Viewer

Length: 759 bp
ATGAATCTTCAGTTTATATGTGTAAAACTGAGTAGGTTGTCTTCTCAGCCAATCCAAGAGCTATTCGCCTCTTCTGGACAGCTCACACTTCGAATGGTGCTCTTTTGGGTCCTACTTGCTTTTGTGTCCATACACTTGCTGCTTGTTTGTGTTATTATTGAGTCATCCGTTGATGCATTTGATATGACTACCTATAGACTCCCCTTTGATTCTTTCTTCTTGATTTTCTTATACCTTCCATTTTCAATAGTGCAAGAAGATGCTCAAGGAACCATATCTAGCAGTGACGCTCTTAATCTACGATTAGAGAATCAGAACTTTTCAATGTCCCAAAAGGAAAAAACTCTTGATGAATTTGTACGGGATAAATGGCTTTCCTTCACTGCTGAGGGTCATGTTGGACTTGGTGTCATATCCTTTCTTGATCTACGAAGTTGGTTTCACAATAATGATGGTTGTTCGGTTCGAATTCATCAGTACTGCCTAGGAAAACTGTTTGCTAAGAAAAAGGGTGAAAGAGTTTGTCCAAGTTGTGGTACTCAATGGCAATATACAGGACCAAAAGCAGAACCTGTAGAAGATGATGAGCCAGATTGCGCTACTCAGAGCCAACCACCTGTGGAACCCAAGAGAAAGAAGCTGAGAACAAGCCGAATTGGTGATGTCCCAAGTAGATGGGCATGCACTAGAATGCTTTTCTTGTGTAAAATGTTGGTTTCAATGATTGGGAAATGCACCCATTTTGCTTTTGAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMC_Nse1 zf-RING-like

Protein Analysis

252

Amino Acids

28.76

Weight (kDa)

7.52

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMC_Nse1 PF07574 101 - 143 4.6e-07 Nse1 non-SMC component of SMC5-6 complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AcsI RAATTY 2 cut(s) 353, 468
AfaI GTAC 3 cut(s) 360, 479, 538
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 4 cut(s) 246, 324, 720, 752
AhdI GACNNNNNGTC 1 cut(s) 407
AluBI AGCT 3 cut(s) 61, 82, 640
AluI AGCT 3 cut(s) 61, 82, 640
Alw21I GWGCWC 1 cut(s) 102
AlwNI CAGNNNCTG 1 cut(s) 572
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 2 cut(s) 353, 468
AspA2I CCTAGG 1 cut(s) 484
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 109, 557
AsuHPI GGTGA 2 cut(s) 524, 671
AsuII TTCGAA 2 cut(s) 91, 466
AvaII GGWCC 2 cut(s) 109, 557
AvrII CCTAGG 1 cut(s) 484
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 446, 669
BfaI CTAG 3 cut(s) 279, 485, 687
BfmI CTRYAG 2 cut(s) 193, 573
BisI GCNGC 1 cut(s) 140
BlnI CCTAGG 1 cut(s) 484
BlsI GCNGC 1 cut(s) 141
BmcAI AGTACT 1 cut(s) 479
Bme18I GGWCC 2 cut(s) 109, 557
BmeRI GACNNNNNGTC 1 cut(s) 407
BmgT120I GGNCC 2 cut(s) 109, 557
BmiI GGNNCC 3 cut(s) 110, 271, 624
BmsI GCATC 2 cut(s) 163, 250
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 91, 466
BpuEI CTTGAG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 533
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 533
BseMII CTCAG 5 cut(s) 20, 59, 378, 617, 632
BseXI GCAGC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 102
BslFI GGGAC 2 cut(s) 313, 650
BslI CCNNNNNNNGG 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 313, 650
BsmI GAATGC 1 cut(s) 696
Bsp119I TTCGAA 2 cut(s) 91, 466
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 424
BspCNI CTCAG 5 cut(s) 21, 58, 379, 616, 633
BspLI GGNNCC 3 cut(s) 110, 271, 624
BspT104I TTCGAA 2 cut(s) 91, 466
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 484
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 1 cut(s) 76
BstBI TTCGAA 2 cut(s) 91, 466
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 6 cut(s) 29, 45, 387, 501, 603, 641
BstF5I GGATG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 1 cut(s) 427
BstMBI GATC 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 684
BstSFI CTRYAG 2 cut(s) 193, 573
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 675
BtsCI GGATG 1 cut(s) 164
BtsI GCAGTG 2 cut(s) 289, 381
BtsIMutI CAGTG 2 cut(s) 289, 381
Cac8I GCNNGC 1 cut(s) 682
CaiI CAGNNNCTG 1 cut(s) 572
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 109, 557
CseI GACGC 1 cut(s) 296
Csp6I GTAC 3 cut(s) 359, 478, 537
CviAII CATG 2 cut(s) 395, 681
CviJI RGCY 8 cut(s) 49, 61, 82, 373, 589, 609, 640, 651
CviKI_1 RGCY 8 cut(s) 49, 61, 82, 373, 589, 609, 640, 651
CviQI GTAC 3 cut(s) 359, 478, 537
DdeI CTNAG 6 cut(s) 29, 45, 387, 501, 603, 641
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 407
Eam1104I CTCTTC 1 cut(s) 76
Eam1105I GACNNNNNGTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 109, 557
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 484
FaeI CATG 2 cut(s) 398, 684
FaqI GGGAC 2 cut(s) 313, 650
FatI CATG 2 cut(s) 394, 680
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 3 cut(s) 279, 485, 687
GlaI GCGC 1 cut(s) 598
GluI GCNGC 1 cut(s) 140
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 599
Hin1II CATG 2 cut(s) 398, 684
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HinfI GANTC 5 cut(s) 4, 161, 198, 209, 310
HphI GGTGA 2 cut(s) 524, 671
Hpy188I TCNGA 2 cut(s) 315, 606
Hpy188III TCNNGA 4 cut(s) 75, 220, 347, 422
HpyAV CCTTC 2 cut(s) 245, 388
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 176, 253, 684, 735
HpyF3I CTNAG 6 cut(s) 29, 45, 387, 501, 603, 641
Hsp92II CATG 2 cut(s) 398, 684
HspAI GCGC 1 cut(s) 597
Kzo9I GATC 1 cut(s) 424
LpnPI CCDG 5 cut(s) 60, 540, 585, 603, 630
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 163, 250
MaeI CTAG 3 cut(s) 279, 485, 687
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MboII GAAGA 5 cut(s) 33, 63, 208, 269, 590
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 353, 468, 654
MlyI GAGTC 2 cut(s) 170, 192
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 2 cut(s) 79, 382
Mph1103I ATGCAT 1 cut(s) 178
MseI TTAA 2 cut(s) 294, 757
MslI CAYNNNNRTG 2 cut(s) 447, 689
Mva1269I GAATGC 1 cut(s) 696
NdeII GATC 1 cut(s) 424
NlaIII CATG 2 cut(s) 398, 684
NlaIV GGNNCC 3 cut(s) 110, 271, 624
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 178
NspI RCATGY 1 cut(s) 684
NspV TTCGAA 2 cut(s) 91, 466
PaeI GCATGC 1 cut(s) 684
PctI GAATGC 1 cut(s) 696
PfeI GAWTC 3 cut(s) 4, 209, 310
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 2 cut(s) 169, 192
PpsI GAGTC 2 cut(s) 169, 192
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 110, 271, 624
PspPI GGNCC 2 cut(s) 109, 557
PspPPI RGGWCCY 1 cut(s) 109
PstNI CAGNNNCTG 1 cut(s) 572
RsaI GTAC 3 cut(s) 360, 479, 538
RsaNI GTAC 3 cut(s) 359, 478, 537
RseI CAYNNNNRTG 2 cut(s) 447, 689
SaqAI TTAA 2 cut(s) 294, 757
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 109, 557
ScaI AGTACT 1 cut(s) 479
SchI GAGTC 2 cut(s) 170, 192
SduI GDGCHC 1 cut(s) 102
SetI ASST 8 cut(s) 38, 63, 84, 194, 237, 574, 619, 642
SfaNI GCATC 2 cut(s) 163, 250
SfcI CTRYAG 2 cut(s) 193, 573
SfuI TTCGAA 2 cut(s) 91, 466
SinI GGWCC 2 cut(s) 109, 557
SmiMI CAYNNNNRTG 2 cut(s) 447, 689
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
SphI GCATGC 1 cut(s) 684
Sse9I AATT 3 cut(s) 353, 468, 654
SspMI CTAG 3 cut(s) 279, 485, 687
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 91, 466
TasI AATT 3 cut(s) 353, 468, 654
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 3 cut(s) 4, 209, 310
Tru1I TTAA 2 cut(s) 294, 757
Tru9I TTAA 2 cut(s) 294, 757
TscAI CASTG 2 cut(s) 289, 388
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 17, 366, 461
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 2 cut(s) 289, 388
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 109, 557
XapI RAATTY 2 cut(s) 353, 468
XceI RCATGY 1 cut(s) 684
XmaJI CCTAGG 1 cut(s) 484
XspI CTAG 3 cut(s) 279, 485, 687
ZrmI AGTACT 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.