Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001787.1

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2564

Gene Structure 2564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001787.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atagaagctatagtgcaagaagctgctcaaggaaccatatctagcagtgatgctcttgatctacgattagagaatcaggtttgcattggtacatcatcacaatcacatggaggtccagttcctacccctactgcattgaagaacttttcaatgtcccagaaggaaaaaactcttgacgaatgtgtacgggataaatggctttccttcactgctgtggatcatgttggacttggtgtcagatctttccttgatctgctaatttggttctgcaataatgatgttccttcatgcgaagtgtgtaacgaagctggagtgaagggtgaaagagtttgtccaagttgtggtactcaatggcaatatacaggaccaaaagcagaagtagtagaagatgatgagccaaattgcgccactcagagccaaccacctgtggaatccaagagaaagaagctgagaacaagccgaataattgaatctagttcctctcaggcttccttacctggtcgtaatctgagaagatccactcgaaattccacccgcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

180

Amino Acids

19.7

Weight (kDa)

6.19

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	341
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	2 cut(s)	225, 510
AcsI	RAATTY	1 cut(s)	526
AfaI	GTAC	3 cut(s)	91, 186, 346
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	139, 150, 470
AhdI	GACNNNNNGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	496
AleI	CACNNNNGTG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
AluBI	AGCT	4 cut(s)	8, 23, 308, 448
AluI	AGCT	4 cut(s)	8, 23, 308, 448
AlwI	GGATC	2 cut(s)	225, 510
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	407
AspS9I	GGNCC	2 cut(s)	113, 365
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	2 cut(s)	113, 365
BbvI	GCAGC	1 cut(s)	10
BciT130I	CCWGG	1 cut(s)	498
BfaI	CTAG	2 cut(s)	42, 474
BfmI	CTRYAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	239
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	2 cut(s)	113, 365
BmeRI	GACNNNNNGTC	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	113, 365
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	4 cut(s)	425, 440, 497, 500
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	139
Bsp143I	GATC	5 cut(s)	58, 217, 239, 250, 515
BspACI	CCGC	1 cut(s)	535
BspCNI	CTCAG	4 cut(s)	424, 441, 496, 501
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	225, 510
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	5 cut(s)	58, 217, 239, 250, 515
Bst2UI	CCWGG	1 cut(s)	498
BstDEI	CTNAG	4 cut(s)	411, 449, 483, 509
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	5 cut(s)	61, 220, 242, 253, 518
BstMBI	GATC	5 cut(s)	58, 217, 239, 250, 515
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	10
BstX2I	RGATCY	2 cut(s)	239, 515
BstYI	RGATCY	2 cut(s)	239, 515
BtsI	GCAGTG	2 cut(s)	52, 207
BtsIMutI	CAGTG	2 cut(s)	52, 207
CfoI	GCGC	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	113, 365
CsiI	ACCWGGT	1 cut(s)	496
Csp6I	GTAC	3 cut(s)	90, 185, 345
CviAII	CATG	3 cut(s)	107, 221, 288
CviJI	RGCY	9 cut(s)	8, 23, 199, 308, 397, 417, 448, 459, 488
CviKI_1	RGCY	9 cut(s)	8, 23, 199, 308, 397, 417, 448, 459, 488
CviQI	GTAC	3 cut(s)	90, 185, 345
DdeI	CTNAG	4 cut(s)	411, 449, 483, 509
DpnI	GATC	5 cut(s)	60, 219, 241, 252, 517
DpnII	GATC	5 cut(s)	58, 217, 239, 250, 515
DriI	GACNNNNNGTC	1 cut(s)	233
Eam1105I	GACNNNNNGTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	113, 365
EcoRII	CCWGG	1 cut(s)	496
FaeI	CATG	3 cut(s)	110, 224, 291
FaiI	YATR	6 cut(s)	11, 38, 108, 222, 289, 360
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	3 cut(s)	106, 220, 287
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	42, 474
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	330
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	3 cut(s)	110, 224, 291
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	73, 431, 470
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	239, 414, 510
Hpy188III	TCNNGA	2 cut(s)	56, 173
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	4 cut(s)	154, 214, 294, 310
HpyCH4V	TGCA	4 cut(s)	16, 84, 134, 270
HpyF3I	CTNAG	4 cut(s)	411, 449, 483, 509
Hsp92II	CATG	3 cut(s)	110, 224, 291
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	5 cut(s)	58, 217, 239, 250, 515
LpnPI	CCDG	9 cut(s)	62, 129, 170, 294, 348, 438, 470, 483, 510
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	40
MabI	ACCWGGT	1 cut(s)	496
MaeI	CTAG	2 cut(s)	42, 474
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	60, 219, 241, 252, 517
MboI	GATC	5 cut(s)	58, 217, 239, 250, 515
MboII	GAAGA	3 cut(s)	151, 398, 525
MflI	RGATCY	2 cut(s)	239, 515
MluCI	AATT	4 cut(s)	258, 400, 465, 526
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	2 cut(s)	104, 490
MslI	CAYNNNNRTG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	498
MvaI	CCWGG	1 cut(s)	498
NdeII	GATC	5 cut(s)	58, 217, 239, 250, 515
NlaIII	CATG	3 cut(s)	110, 224, 291
NlaIV	GGNNCC	1 cut(s)	34
OliI	CACNNNNGTG	1 cut(s)	212
PfeI	GAWTC	3 cut(s)	73, 431, 470
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	113, 365
PsuI	RGATCY	2 cut(s)	239, 515
RsaI	GTAC	3 cut(s)	91, 186, 346
RsaNI	GTAC	3 cut(s)	90, 185, 345
RseI	CAYNNNNRTG	1 cut(s)	212
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	58, 217, 239, 250, 515
Sau96I	GGNCC	2 cut(s)	113, 365
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	8 cut(s)	10, 25, 81, 115, 310, 427, 450, 499
SexAI	ACCWGGT	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	2 cut(s)	113, 365
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	258, 400, 465, 526
SsiI	CCGC	1 cut(s)	535
SspMI	CTAG	2 cut(s)	42, 474
StyD4I	CCNGG	1 cut(s)	496
TaqI	TCGA	1 cut(s)	523
TasI	AATT	4 cut(s)	258, 400, 465, 526
TfiI	GAWTC	3 cut(s)	73, 431, 470
TscAI	CASTG	2 cut(s)	52, 214
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	276
TspRI	CASTG	2 cut(s)	52, 214
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	113, 365
XapI	RAATTY	1 cut(s)	526
XspI	CTAG	2 cut(s)	42, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.