Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002204.1

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Forward (+)

16170 .. 18539

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002204.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgtcccagaaggaaaaaaatcttgatgaatttgtacgggataaatggctttccttcactgctgagggttatgttggacttggtgtcagatccttccttgatctgcgaagttggtttcgcaataatgatgttccttcatgcgaagtgtgcaacgaaactggcgtgaaggcacaaagcccgactaaccctacaagataccgaaaagggcccaaacctaaggcccaatccaagaagcaggagataccccagacgccagtcaagccaggcccgaccccaccaccggcagatcctccaccgccccgctccaccaccatcgtcggacatcctccgatatcaatctaccatccccgtcacaccatggagatgcgacatcccagatatcccagatcgtgtcccatcgaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

9.67

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	303
AciI	CCGC	2 cut(s)	296, 301
AclWI	GGATC	2 cut(s)	84, 281
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	251
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	280
AhdI	GACNNNNNGTC	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	262
AlwI	GGATC	2 cut(s)	84, 281
AoxI	GGCC	3 cut(s)	206, 219, 265
ApaI	GGGCCC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	4 cut(s)	206, 207, 220, 266
AxyI	CCTNAGG	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	63
BccI	CCATC	3 cut(s)	320, 351, 404
BciT130I	CCWGG	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	264
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgT120I	GGNCC	4 cut(s)	206, 207, 220, 266
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	254
Bpu10I	CCTNAGC	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	163, 254
Bse21I	CCTNAGG	1 cut(s)	216
Bse8I	GATNNNNATC	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	322, 343, 370
BseJI	GATNNNNATC	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	163, 254
BseSI	GKGCMC	1 cut(s)	210
BshFI	GGCC	3 cut(s)	208, 221, 267
BsiSI	CCGG	1 cut(s)	281
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	208, 221, 267
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	4 cut(s)	89, 100, 286, 386
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	296, 301
BspANI	GGCC	3 cut(s)	208, 221, 267
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	84, 281
BsrBI	CCGCTC	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	280
BsrI	ACTGG	2 cut(s)	163, 254
BssAI	RCCGGY	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	4 cut(s)	89, 100, 286, 386
BssNI	GRCGYC	1 cut(s)	251
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	251
BstDEI	CTNAG	2 cut(s)	63, 216
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	3 cut(s)	322, 343, 370
BstKTI	GATC	4 cut(s)	92, 103, 289, 389
BstMBI	GATC	4 cut(s)	89, 100, 286, 386
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 259
BstNI	CCWGG	1 cut(s)	264
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	89, 286
BstYI	RGATCY	2 cut(s)	89, 286
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	208, 221, 267
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	322, 343, 370
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	4 cut(s)	206, 207, 220, 266
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	2 cut(s)	138, 358
CviJI	RGCY	6 cut(s)	49, 177, 208, 221, 262, 267
CviKI_1	RGCY	6 cut(s)	49, 177, 208, 221, 262, 267
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	2 cut(s)	63, 216
DpnI	GATC	4 cut(s)	91, 102, 288, 388
DpnII	GATC	4 cut(s)	89, 100, 286, 386
DriI	GACNNNNNGTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	2 cut(s)	333, 380
Eco81I	CCTNAGG	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	262
EcoRV	GATATC	2 cut(s)	333, 380
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	141, 361
FaiI	YATR	4 cut(s)	72, 139, 359, 406
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	137, 357
FauI	CCCGC	1 cut(s)	308
FokI	GGATG	3 cut(s)	309, 330, 357
FriOI	GRGCYC	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	208, 221, 267
HapII	CCGG	1 cut(s)	281
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	251
Hin1II	CATG	2 cut(s)	141, 361
HpaII	CCGG	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	89, 320, 330
Hpy188III	TCNNGA	1 cut(s)	23
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	5 cut(s)	4, 64, 103, 144, 160
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 259
HpyF3I	CTNAG	2 cut(s)	63, 216
Hsp92I	GRCGYC	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	141, 361
Kzo9I	GATC	4 cut(s)	89, 100, 286, 386
LmnI	GCTCC	1 cut(s)	308
LweI	GCATC	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	91, 102, 288, 388
MbiI	CCGCTC	1 cut(s)	303
MboI	GATC	4 cut(s)	89, 100, 286, 386
MflI	RGATCY	2 cut(s)	89, 286
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	55, 298
MnlI	CCTC	3 cut(s)	58, 300, 336
MslI	CAYNNNNRTG	1 cut(s)	362
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	147, 259
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	89, 100, 286, 386
NlaIII	CATG	2 cut(s)	141, 361
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PshAI	GACNNNNGTC	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	208
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	4 cut(s)	206, 207, 220, 266
PsuI	RGATCY	2 cut(s)	89, 286
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	362
Sau3AI	GATC	4 cut(s)	89, 100, 286, 386
Sau96I	GGNCC	4 cut(s)	206, 207, 220, 266
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	2 cut(s)	296, 301
StyD4I	CCNGG	1 cut(s)	262
StyI	CCWWGG	1 cut(s)	357
TaqI	TCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	29
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	350
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	42, 126
TspRI	CASTG	1 cut(s)	64
XapI	RAATTY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.