Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Forward (+)

37089918 .. 37093585

Gene Structure 3668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGAATACCCAATTTCTTCTTTCGGTTCTTGGGAAATTGATTGCTTTGGTTACAAGTGGATGCAGTGAGAAGGAGTCTGTCAGCTTTTGGAAGTCTATTTCTTATGAATTCTTTGTTGCTCTTCCTTATGTTTCTTACAGCCTTCTAATCTGTGGCACCTGGTTCTCTATAGAAGCAATAGTGCAAGAAGCTGCTCAAGGAACCATATGTAGCAGAGATTCACTTCCTATCCCTACTGCATTGAAGAACTTTTCAATGTCCCAAAAGGAAAAAACTCTTGATGAATTTGTACGGGATAAATGGCTTTCCTTCACTGCTGAGGGTCATGTTGGACTTGGTGTCAGATCCTTCCTTGATCTGCGAAGTTGGTTTCGCAATAATCATCTTCCTTCATGCGAAGTGTGCAACGAAACTGGCGTGAAGGCAGTGTTATGCCAGAAAGAGGGTTGTTCGGTTCGAATTCATCAGTACTGCCTAGGAAAACTGGTGAGAGTTTGTCCAAGTTGTGGTACTCAATGGCAATATACAGGACCAAAAGCAGAACCTGTAGAAGATGATGAGCCAGATTGCACTACTCAGAGCCAACCACCTGTGGAACCCAAGAGAAAGAAGTTGAGAACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

6.81

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_Nse1	PF07574	79 - 121	2.6e-09	Nse1 non-SMC component of SMC5-6 complex
zf-RING-like	PF08746	133 - 170	3.4e-07	RING-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	509
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	3 cut(s)	110, 287, 462
AfaI	GTAC	3 cut(s)	294, 473, 514
AfiI	CCNNNNNNNGG	2 cut(s)	445, 509
AgsI	TTSAA	2 cut(s)	247, 258
AhdI	GACNNNNNGTC	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	3 cut(s)	87, 194, 627
AluI	AGCT	3 cut(s)	87, 194, 627
AlwI	GGATC	1 cut(s)	342
AlwNI	CAGNNNCTG	1 cut(s)	548
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	3 cut(s)	110, 287, 462
AspA2I	CCTAGG	1 cut(s)	478
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	502
AsuII	TTCGAA	1 cut(s)	460
AvaII	GGWCC	1 cut(s)	533
AvrII	CCTAGG	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	171, 549
BisI	GCNGC	1 cut(s)	195
BlnI	CCTAGG	1 cut(s)	478
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	533
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	3 cut(s)	160, 205, 600
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 509
Bse1I	ACTGG	2 cut(s)	421, 492
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	68
BseLI	CCNNNNNNNGG	2 cut(s)	445, 509
BseMII	CTCAG	2 cut(s)	312, 593
BseNI	ACTGG	2 cut(s)	421, 492
BseXI	GCAGC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	445, 509
BsmFI	GGGAC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	347, 358
BspCNI	CTCAG	2 cut(s)	313, 592
BspLI	GGNNCC	3 cut(s)	160, 205, 600
BspPI	GGATC	1 cut(s)	342
BspQI	GCTCTTC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	460
BspT107I	GGYRCC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	421, 492
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	347, 358
BssT1I	CCWWGG	1 cut(s)	478
Bst2UI	CCWGG	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	460
BstDEI	CTNAG	2 cut(s)	321, 579
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	350, 361
BstMBI	GATC	2 cut(s)	347, 358
BstMWI	GCNNNNNNNGC	1 cut(s)	405
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	161
BstSFI	CTRYAG	2 cut(s)	171, 549
BstV1I	GCAGC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	68
BtsI	GCAGTG	3 cut(s)	73, 315, 435
BtsIMutI	CAGTG	3 cut(s)	73, 315, 435
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	533
CsiI	ACCWGGT	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	293, 472, 513
CviAII	CATG	2 cut(s)	329, 396
CviJI	RGCY	7 cut(s)	87, 144, 194, 307, 565, 585, 627
CviKI_1	RGCY	7 cut(s)	87, 144, 194, 307, 565, 585, 627
CviQI	GTAC	3 cut(s)	293, 472, 513
DdeI	CTNAG	2 cut(s)	321, 579
DpnI	GATC	2 cut(s)	349, 360
DpnII	GATC	2 cut(s)	347, 358
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	533
EcoRI	GAATTC	2 cut(s)	110, 462
EcoRII	CCWGG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	332, 399
FaiI	YATR	9 cut(s)	108, 132, 173, 209, 211, 330, 397, 436, 528
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	328, 395
FauNDI	CATATG	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	332, 399
HinfI	GANTC	2 cut(s)	77, 221
HphI	GGTGA	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	347, 582
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	6 cut(s)	67, 155, 322, 361, 402, 418
HpyCH4V	TGCA	5 cut(s)	66, 187, 242, 408, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	405
HpyF3I	CTNAG	2 cut(s)	321, 579
Hsp92II	CATG	2 cut(s)	332, 399
Kzo9I	GATC	2 cut(s)	347, 358
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	148, 175, 402, 452, 473, 516, 561, 579, 606
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	53
MabI	ACCWGGT	1 cut(s)	161
MaeI	CTAG	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	349, 360
MboI	GATC	2 cut(s)	347, 358
MboII	GAAGA	5 cut(s)	11, 116, 259, 380, 566
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	5 cut(s)	14, 38, 110, 287, 462
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	316, 439
MspR9I	CCNGG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	405
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	2 cut(s)	347, 358
NlaIII	CATG	2 cut(s)	332, 399
NlaIV	GGNNCC	3 cut(s)	160, 205, 600
NspV	TTCGAA	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	3 cut(s)	160, 205, 600
PspPI	GGNCC	1 cut(s)	533
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	3 cut(s)	294, 473, 514
RsaNI	GTAC	3 cut(s)	293, 472, 513
SapI	GCTCTTC	1 cut(s)	129
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	347, 358
Sau96I	GGNCC	1 cut(s)	533
ScaI	AGTACT	1 cut(s)	473
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	163
SetI	ASST	6 cut(s)	89, 164, 196, 550, 595, 629
SexAI	ACCWGGT	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	2 cut(s)	171, 549
SfuI	TTCGAA	1 cut(s)	460
SinI	GGWCC	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	14, 38, 110, 287, 462
SspMI	CTAG	1 cut(s)	479
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	478
TaqI	TCGA	1 cut(s)	460
TasI	AATT	5 cut(s)	14, 38, 110, 287, 462
TatI	WGTACW	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	221
TscAI	CASTG	3 cut(s)	73, 322, 435
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	123, 300, 384, 455
TspRI	CASTG	3 cut(s)	73, 322, 435
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	533
XapI	RAATTY	3 cut(s)	110, 287, 462
XmaJI	CCTAGG	1 cut(s)	478
XspI	CTAG	1 cut(s)	479
ZrmI	AGTACT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.