Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004174.1

Orthogroup ID

OG0003611

Physical Location & Seq

Genomic Coordinates Reverse (-)

24984 .. 31383

Gene Structure 6400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004174.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atggatccgatttatagggctgctgcctccttaaggcgtgatgtggctggcagaaagttgatggtagcggtccggtcgaagtggtgcggtggttgcgggtttcaaagtatgacggaactgaacgcgaagcaccacccgactctgactcaagctctgctctctcgcggcccacttaaaagaggaccagttccaccgcacgttctcggaactcaccggagaaaactcaggtctccgtgttcgaaggatgattatcttctgaggataaacaagggtgggttcacttcgagttgcggggatgcaggaatcaatatgaagttttatctttgtacgtgtggggtgtgttatcatatgcaattgtgcattgtgtgcacgctggagcataatcctcgattcctcgtctacagatgtatagaagctatagtgcaagaagctgctcaaggaaccatatctagcactgatgctcttaatctacgattagagaatcaggtttgcattggtacatcatcacaatcacatggaggtccagttcctatccctactgcattgaagaacttttcaatgtcccagaaggaaaaaactcttgacgaatgtgtacgggataaatggctttccttcactgctgtggatcatgttggacttggtgtcagatctttccttgatctgctaatttggttctgcaataatgatgttccttcatgcgaagtgtgtaacgaagctggagtgaaggttgtctcttcctttggtgaaagagtttgtccaagttgtggtactcaatggcaatatacaggaccaaaagcagaagcagtagaagatgatgagccaaattgcgccactcagagccaaccacctgtggaatccaagagaaagaagctgagaacaagccgaattggtgatggatatataattgaatctagttcctctcaggcttccttacctggtcgtaatctgagaagatccactcgaaattccacccgcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMC_Nse1 zf-RING-like

Protein Analysis

326

Amino Acids

35.93

Weight (kDa)

9.05

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21140
fragaria_vesca	FvH4_3g30540 FvH4_3g30540 FvH4_3g30540 FvH4_3g30540
malus_domestica	MD11G1180700.v1.1
prunus_persica	Prupe.6G153500_v2.0.a1
pyrus_communis	pycom11g15590
rosa_chinensis	RchiOBHm_Chr5g0056151 RchiOBHm_Chr5g0056531 RchiOBHm_Chr6g0256561
rosa_laevigata	RLG00000035103
rosa_multiflora	Rmu_sc0000366.1_g000003 Rmu_sc0000366.1_g000039 Rmu_sc0001787.1_g000001 Rmu_sc0002204.1_g000004 Rmu_sc0004101.1_g000056 Rmu_sc0004174.1_g000007 Rmu_sc0004368.1_g000013 Rmu_sc0027729.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023800
rosa_rugosa	Rorug05G0300600
rosa_samantha	Rh1BG210900 Rh1DG237500 Rh5AG370900 Rh5AG477300 Rh5BG382100 Rh5BG497800 Rh5CG324300 Rh5CG405300 Rh5DG395000
rosa_wichuraiana	Rw0G022130 Rw1G009200 Rw2G024960 Rw5G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	2 cut(s)	125, 165
AciI	CCGC	7 cut(s)	68, 87, 96, 165, 194, 291, 973
AclWI	GGATC	3 cut(s)	12, 633, 948
AcsI	RAATTY	1 cut(s)	964
AfaI	GTAC	4 cut(s)	328, 499, 594, 769
AfiI	CCNNNNNNNGG	2 cut(s)	33, 764
AflII	CTTAAG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	4 cut(s)	104, 547, 558, 908
AhdI	GACNNNNNGTC	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	934
AleI	CACNNNNGTG	1 cut(s)	620
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	5 cut(s)	152, 416, 431, 716, 871
AluI	AGCT	5 cut(s)	152, 416, 431, 716, 871
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	2 cut(s)	234, 736
Alw44I	GTGCAC	1 cut(s)	367
AlwI	GGATC	3 cut(s)	12, 633, 948
AoxI	GGCC	1 cut(s)	166
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	3 cut(s)	20, 23, 431
ApoI	RAATTY	1 cut(s)	964
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	5 cut(s)	70, 167, 182, 521, 788
AsuHPI	GGTGA	3 cut(s)	203, 755, 902
AsuII	TTCGAA	1 cut(s)	239
AvaII	GGWCC	4 cut(s)	70, 182, 521, 788
BaeGI	GKGCMC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	7, 10, 418
BccI	CCATC	2 cut(s)	55, 887
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	1 cut(s)	936
BcoDI	GTCTC	2 cut(s)	234, 736
BfaI	CTAG	2 cut(s)	450, 912
BfmI	CTRYAG	2 cut(s)	400, 417
BfrI	CTTAAG	1 cut(s)	31
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	4 cut(s)	21, 24, 166, 432
BlsI	GCNGC	4 cut(s)	22, 25, 167, 433
Bme1390I	CCNGG	1 cut(s)	936
Bme18I	GGWCC	4 cut(s)	70, 182, 521, 788
BmeRI	GACNNNNNGTC	1 cut(s)	641
BmgT120I	GGNCC	5 cut(s)	70, 167, 182, 521, 788
BmiI	GGNNCC	2 cut(s)	6, 442
BmrFI	CCNGG	1 cut(s)	936
BmsI	GCATC	2 cut(s)	286, 448
BpmI	CTGGAG	2 cut(s)	395, 738
Bpu14I	TTCGAA	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	132, 420
BsaAI	YACGTR	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	234
BsaWI	WCCGGW	2 cut(s)	72, 213
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 764
Bse1I	ACTGG	2 cut(s)	185, 524
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	936
BseGI	GGATG	2 cut(s)	250, 301
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	33, 764
BseMII	CTCAG	6 cut(s)	238, 248, 848, 863, 935, 938
BseNI	ACTGG	2 cut(s)	185, 524
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	3 cut(s)	7, 10, 418
Bsh1236I	CGCG	2 cut(s)	125, 165
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	73, 214
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	33, 764
BsmAI	GTCTC	2 cut(s)	234, 736
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	5 cut(s)	4, 625, 647, 658, 953
BspACI	CCGC	7 cut(s)	68, 87, 96, 165, 194, 291, 973
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	6 cut(s)	237, 249, 847, 864, 934, 939
BspFNI	CGCG	2 cut(s)	125, 165
BspLI	GGNNCC	2 cut(s)	6, 442
BspPI	GGATC	3 cut(s)	12, 633, 948
BspT104I	TTCGAA	1 cut(s)	239
BspTI	CTTAAG	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	185, 524
BssMI	GATC	5 cut(s)	4, 625, 647, 658, 953
Bst2UI	CCWGG	1 cut(s)	936
Bst6I	CTCTTC	1 cut(s)	739
BstAFI	CTTAAG	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	49, 371
BstDEI	CTNAG	6 cut(s)	224, 257, 834, 872, 921, 947
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	2 cut(s)	250, 301
BstFNI	CGCG	2 cut(s)	125, 165
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	5 cut(s)	7, 628, 650, 661, 956
BstMAI	GTCTC	2 cut(s)	234, 736
BstMBI	GATC	5 cut(s)	4, 625, 647, 658, 953
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 366
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	1 cut(s)	934
BstSFI	CTRYAG	2 cut(s)	400, 417
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	2 cut(s)	125, 165
BstV1I	GCAGC	3 cut(s)	7, 10, 418
BstX2I	RGATCY	3 cut(s)	4, 647, 953
BstYI	RGATCY	3 cut(s)	4, 647, 953
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	250, 301
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	2 cut(s)	453, 615
Cac8I	GCNNGC	2 cut(s)	49, 371
CfoI	GCGC	1 cut(s)	830
Cfr13I	GGNCC	5 cut(s)	70, 167, 182, 521, 788
CpoI	CGGWCCG	1 cut(s)	70
CsiI	ACCWGGT	1 cut(s)	934
Csp6I	GTAC	4 cut(s)	327, 498, 593, 768
CspI	CGGWCCG	1 cut(s)	70
CviAII	CATG	3 cut(s)	515, 629, 696
CviQI	GTAC	4 cut(s)	327, 498, 593, 768
DdeI	CTNAG	6 cut(s)	224, 257, 834, 872, 921, 947
DpnI	GATC	5 cut(s)	6, 627, 649, 660, 955
DpnII	GATC	5 cut(s)	4, 625, 647, 658, 953
DriI	GACNNNNNGTC	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	739
Eam1105I	GACNNNNNGTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	4 cut(s)	70, 182, 521, 788
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	934
FaeI	CATG	3 cut(s)	518, 632, 699
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	3 cut(s)	514, 628, 695
FauI	CCCGC	2 cut(s)	89, 284
FauNDI	CATATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	21, 24, 166, 432
FokI	GGATG	2 cut(s)	257, 308
Fsp4HI	GCNGC	4 cut(s)	21, 24, 166, 432
FspBI	CTAG	2 cut(s)	450, 912
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	4 cut(s)	21, 24, 166, 432
GsuI	CTGGAG	2 cut(s)	395, 738
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	73, 214
HhaI	GCGC	1 cut(s)	830
Hin1II	CATG	3 cut(s)	518, 632, 699
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HinfI	GANTC	7 cut(s)	139, 145, 303, 390, 481, 854, 908
HpaII	CCGG	2 cut(s)	73, 214
HphI	GGTGA	3 cut(s)	203, 755, 902
Hpy166II	GTNNAC	4 cut(s)	279, 369, 400, 593
Hpy188I	TCNGA	7 cut(s)	9, 144, 206, 258, 647, 837, 948
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	4 cut(s)	279, 369, 400, 593
HpyAV	CCTTC	5 cut(s)	235, 562, 622, 702, 718
HpyCH4IV	ACGT	2 cut(s)	198, 329
HpyCH4V	TGCA	8 cut(s)	299, 352, 360, 369, 424, 492, 542, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 366
HpyF3I	CTNAG	6 cut(s)	224, 257, 834, 872, 921, 947
HpySE526I	ACGT	2 cut(s)	198, 329
Hsp92II	CATG	3 cut(s)	518, 632, 699
HspAI	GCGC	1 cut(s)	828
Kzo9I	GATC	5 cut(s)	4, 625, 647, 658, 953
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	3 cut(s)	7, 10, 418
LweI	GCATC	2 cut(s)	286, 448
MabI	ACCWGGT	1 cut(s)	934
MaeI	CTAG	2 cut(s)	450, 912
MaeII	ACGT	2 cut(s)	198, 329
MaeIII	GTNAC	1 cut(s)	707
MalI	GATC	5 cut(s)	6, 627, 649, 660, 955
MboI	GATC	5 cut(s)	4, 625, 647, 658, 953
MboII	GAAGA	5 cut(s)	245, 559, 726, 821, 963
MfeI	CAATTG	1 cut(s)	353
MflI	RGATCY	3 cut(s)	4, 647, 953
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	6 cut(s)	353, 666, 823, 885, 903, 964
MlyI	GAGTC	2 cut(s)	133, 139
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	7 cut(s)	37, 173, 252, 396, 404, 512, 928
MseI	TTAA	3 cut(s)	32, 174, 465
MslI	CAYNNNNRTG	1 cut(s)	620
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	2 cut(s)	73, 214
MspR9I	CCNGG	1 cut(s)	936
MunI	CAATTG	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	2 cut(s)	125, 165
MwoI	GCNNNNNNNGC	2 cut(s)	93, 366
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	5 cut(s)	4, 625, 647, 658, 953
NlaIII	CATG	3 cut(s)	518, 632, 699
NlaIV	GGNNCC	2 cut(s)	6, 442
NspV	TTCGAA	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	620
PfeI	GAWTC	5 cut(s)	303, 390, 481, 854, 908
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	4 cut(s)	22, 25, 167, 433
PleI	GAGTC	2 cut(s)	133, 139
PpsI	GAGTC	2 cut(s)	133, 139
Ppu21I	YACGTR	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	2 cut(s)	6, 442
PspPI	GGNCC	5 cut(s)	70, 167, 182, 521, 788
PsuI	RGATCY	3 cut(s)	4, 647, 953
RsaI	GTAC	4 cut(s)	328, 499, 594, 769
RsaNI	GTAC	4 cut(s)	327, 498, 593, 768
RseI	CAYNNNNRTG	1 cut(s)	620
Rsr2I	CGGWCCG	1 cut(s)	70
RsrII	CGGWCCG	1 cut(s)	70
SaqAI	TTAA	3 cut(s)	32, 174, 465
SatI	GCNGC	4 cut(s)	21, 24, 166, 432
Sau3AI	GATC	5 cut(s)	4, 625, 647, 658, 953
Sau96I	GGNCC	5 cut(s)	70, 167, 182, 521, 788
SchI	GAGTC	2 cut(s)	133, 139
ScrFI	CCNGG	1 cut(s)	936
SduI	GDGCHC	1 cut(s)	371
SexAI	ACCWGGT	1 cut(s)	934
SfaNI	GCATC	2 cut(s)	286, 448
SfcI	CTRYAG	2 cut(s)	400, 417
SfuI	TTCGAA	1 cut(s)	239
SinI	GGWCC	4 cut(s)	70, 182, 521, 788
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	3 cut(s)	31, 147, 435
SmoI	CTYRAG	3 cut(s)	31, 147, 435
Sse9I	AATT	6 cut(s)	353, 666, 823, 885, 903, 964
SsiI	CCGC	7 cut(s)	68, 87, 96, 165, 194, 291, 973
SspMI	CTAG	2 cut(s)	450, 912
StyD4I	CCNGG	1 cut(s)	934
TaiI	ACGT	2 cut(s)	201, 332
TaqI	TCGA	5 cut(s)	77, 239, 284, 388, 961
TasI	AATT	6 cut(s)	353, 666, 823, 885, 903, 964
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	5 cut(s)	303, 390, 481, 854, 908
Tru1I	TTAA	3 cut(s)	32, 174, 465
Tru9I	TTAA	3 cut(s)	32, 174, 465
TscAI	CASTG	2 cut(s)	460, 622
TseI	GCWGC	3 cut(s)	20, 23, 431
TspDTI	ATGAA	2 cut(s)	326, 684
TspGWI	ACGGA	2 cut(s)	128, 222
TspRI	CASTG	2 cut(s)	460, 622
Van91I	CCANNNNNTGG	1 cut(s)	764
Vha464I	CTTAAG	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	4 cut(s)	70, 182, 521, 788
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	399
XspI	CTAG	2 cut(s)	450, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.