Rorug05G0300600

Non-structural maintenance of chromosomes element 1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003611
Physical Location & Seq
Reverse (-)
34936843 .. 34937654
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0300600.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGTGGTACGCTCAAAGCAAGCGCATAATTTAACCCTGAAAACATCGTTAGTAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SMC_Nse1 zf-RING-like

Protein Analysis

198

Amino Acids

22.0

Weight (kDa)

6.51

Isoelectric Point (pI)

52.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 541
AciI CCGC 1 cut(s) 528
AclWI GGATC 3 cut(s) 141, 327, 340
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 2 cut(s) 91, 546
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 2 cut(s) 449, 541
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 2 cut(s) 53, 199
AluI AGCT 2 cut(s) 53, 199
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 3 cut(s) 141, 327, 340
Ama87I CYCGRG 1 cut(s) 261
Aor51HI AGCGCT 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 50, 293
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 2 cut(s) 500, 562
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 450
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 62, 280
BccI CCATC 1 cut(s) 368
BceAI ACGGC 2 cut(s) 72, 466
BciT130I CCWGG 2 cut(s) 94, 416
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 2 cut(s) 315, 360
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 186
BisI GCNGC 2 cut(s) 51, 294
BlsI GCNGC 2 cut(s) 52, 295
Bme1390I CCNGG 2 cut(s) 94, 416
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 4 cut(s) 6, 245, 334, 355
BmrFI CCNGG 2 cut(s) 94, 416
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 523
BpuEI CTTGAG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 486
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 541
Bse1I ACTGG 2 cut(s) 205, 299
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 449, 541
BseMII CTCAG 1 cut(s) 537
BseNI ACTGG 2 cut(s) 205, 299
BseRI GAGGAG 3 cut(s) 44, 417, 420
BseSI GKGCMC 3 cut(s) 164, 306, 450
BseXI GCAGC 2 cut(s) 62, 280
BsiHKAI GWGCWC 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 449, 541
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 164, 262, 306, 450
Bsp143I GATC 4 cut(s) 133, 186, 332, 409
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 1 cut(s) 536
BspLI GGNNCC 4 cut(s) 6, 245, 334, 355
BspPI GGATC 3 cut(s) 141, 327, 340
BsrI ACTGG 2 cut(s) 205, 299
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 133, 186, 332, 409
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 1 cut(s) 523
BstEII GGTNACC 2 cut(s) 467, 530
BstF5I GGATG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 2 cut(s) 500, 562
BstKTI GATC 4 cut(s) 136, 189, 335, 412
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 133, 186, 332, 409
BstNI CCWGG 2 cut(s) 94, 416
BstPI GGTNACC 2 cut(s) 467, 530
BstSCI CCNGG 2 cut(s) 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 450
BstV1I GCAGC 2 cut(s) 62, 280
BstX2I RGATCY 3 cut(s) 133, 186, 332
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 332
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 2 cut(s) 306, 544
Cac8I GCNNGC 1 cut(s) 558
CfoI GCGC 2 cut(s) 500, 562
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 545
CviAII CATG 2 cut(s) 70, 307
CviJI RGCY 7 cut(s) 53, 87, 199, 260, 293, 479, 522
CviKI_1 RGCY 7 cut(s) 53, 87, 199, 260, 293, 479, 522
CviQI GTAC 2 cut(s) 90, 545
DdeI CTNAG 1 cut(s) 523
DpnI GATC 4 cut(s) 135, 188, 334, 411
DpnII GATC 4 cut(s) 133, 186, 332, 409
DraIII CACNNNGTG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 499
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 467, 530
EcoO65I GGTNACC 2 cut(s) 467, 530
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 1 cut(s) 262
FaeI CATG 2 cut(s) 73, 310
FaiI YATR 7 cut(s) 71, 144, 210, 216, 308, 564, 595
FatI CATG 2 cut(s) 69, 306
Fnu4HI GCNGC 2 cut(s) 51, 294
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 51, 294
FspBI CTAG 2 cut(s) 315, 360
GlaI GCGC 2 cut(s) 499, 561
GluI GCNGC 2 cut(s) 51, 294
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeII RGCGCY 1 cut(s) 501
HhaI GCGC 2 cut(s) 500, 562
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 73, 310
Hin6I GCGC 2 cut(s) 498, 560
HinP1I GCGC 2 cut(s) 498, 560
HinfI GANTC 3 cut(s) 100, 123, 178
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 357, 448
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 4 cut(s) 110, 182, 247, 263
Hpy8I GTNNAC 2 cut(s) 357, 448
HpyAV CCTTC 2 cut(s) 469, 485
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 2 cut(s) 252, 459
HpyCH4V TGCA 2 cut(s) 394, 448
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 2 cut(s) 252, 459
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 73, 310
HspAI GCGC 2 cut(s) 498, 560
Kzo9I GATC 4 cut(s) 133, 186, 332, 409
LmnI GCTCC 1 cut(s) 301
Lsp1109I GCAGC 2 cut(s) 62, 280
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 360
MaeII ACGT 2 cut(s) 252, 459
MaeIII GTNAC 3 cut(s) 467, 506, 530
MalI GATC 4 cut(s) 135, 188, 334, 411
MboI GATC 4 cut(s) 133, 186, 332, 409
MboII GAAGA 1 cut(s) 422
MflI RGATCY 3 cut(s) 133, 186, 332
MhlI GDGCHC 4 cut(s) 164, 262, 306, 450
MluCI AATT 2 cut(s) 346, 565
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 2 cut(s) 156, 569
MspA1I CMGCKG 2 cut(s) 53, 199
MspR9I CCNGG 2 cut(s) 94, 416
MvaI CCWGG 2 cut(s) 94, 416
NdeII GATC 4 cut(s) 133, 186, 332, 409
NlaIII CATG 2 cut(s) 73, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 334, 355
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PflMI CCANNNNNTGG 1 cut(s) 541
PkrI GCNGC 2 cut(s) 52, 295
Psp6I CCWGG 2 cut(s) 92, 414
PspEI GGTNACC 2 cut(s) 467, 530
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 4 cut(s) 6, 245, 334, 355
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 3 cut(s) 133, 186, 332
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 546
RsaNI GTAC 2 cut(s) 90, 545
SaqAI TTAA 2 cut(s) 156, 569
SatI GCNGC 2 cut(s) 51, 294
Sau3AI GATC 4 cut(s) 133, 186, 332, 409
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 416
SduI GDGCHC 4 cut(s) 164, 262, 306, 450
SetI ASST 9 cut(s) 55, 98, 201, 255, 284, 423, 462, 474, 496
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 128, 261
SmoI CTYRAG 2 cut(s) 128, 261
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 2 cut(s) 346, 565
SsiI CCGC 1 cut(s) 528
SspMI CTAG 2 cut(s) 315, 360
StyD4I CCNGG 2 cut(s) 92, 414
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 2 cut(s) 255, 462
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 346, 565
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 2 cut(s) 156, 569
Tru9I TTAA 2 cut(s) 156, 569
TscAI CASTG 2 cut(s) 306, 544
TseI GCWGC 2 cut(s) 50, 293
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 544
Van91I CCANNNNNTGG 1 cut(s) 541
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 315, 360
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.